Wall clock time and date at job start Tue Mar 31 2020 12:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47166 * 270.00168 * 3 2 1 5 5 H 1.48500 * 109.47150 * 29.99909 * 3 2 1 6 6 H 1.48493 * 109.47271 * 150.00169 * 3 2 1 7 7 C 1.37872 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50537 * 299.92062 * 9 7 2 11 11 C 1.53121 * 109.50332 * 59.99739 * 9 7 2 12 12 C 1.53122 * 109.16257 * 177.59553 * 11 9 7 13 13 C 1.53045 * 109.27695 * 302.34995 * 12 11 9 14 14 N 1.46842 * 109.52518 * 59.17466 * 13 12 11 15 15 C 1.38644 * 111.00007 * 174.16137 * 14 13 12 16 16 C 1.38638 * 121.05328 * 113.01842 * 15 14 13 17 17 C 1.38769 * 119.69228 * 180.02562 * 16 15 14 18 18 N 1.31295 * 121.86651 * 359.97438 * 17 16 15 19 19 C 1.33794 * 121.67420 * 0.02562 * 18 17 16 20 20 C 1.40522 * 120.98525 * 180.24110 * 19 18 17 21 21 C 1.36254 * 119.75184 * 180.28637 * 20 19 18 22 22 Cl 1.73597 * 119.49689 * 179.73551 * 21 20 19 23 23 C 1.39398 * 121.00159 * 359.46141 * 21 20 19 24 24 C 1.36215 * 120.80617 * 0.27101 * 23 21 20 25 25 C 1.40189 * 119.64494 * 0.02562 * 24 23 21 26 26 C 1.46843 * 111.19912 * 298.25956 * 14 13 12 27 27 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52341 * 57.69669 * 11 9 7 29 29 H 1.08998 * 109.52221 * 297.50294 * 11 9 7 30 30 H 1.08994 * 109.50610 * 182.40451 * 12 11 9 31 31 H 1.09000 * 109.50108 * 62.28462 * 12 11 9 32 32 H 1.09005 * 109.45769 * 299.15900 * 13 12 11 33 33 H 1.09000 * 109.46009 * 179.19718 * 13 12 11 34 34 H 1.07996 * 120.15363 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.06753 * 179.97438 * 17 16 15 36 36 H 1.07999 * 120.12593 * 0.02562 * 20 19 18 37 37 H 1.08006 * 119.59886 * 180.29725 * 23 21 20 38 38 H 1.08006 * 120.17874 * 180.02562 * 24 23 21 39 39 H 1.09004 * 109.46104 * 181.75429 * 26 14 13 40 40 H 1.08998 * 109.46197 * 301.72536 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5582 0.8902 11 6 0.3700 -2.5807 -1.2502 12 6 -0.3457 -3.9341 -1.2730 13 6 0.6945 -5.0563 -1.2417 14 7 1.5112 -4.9347 -0.0275 15 6 2.3772 -6.0100 0.0986 16 6 3.7491 -5.8397 -0.0069 17 6 4.5899 -6.9359 0.1234 18 7 4.1251 -8.1434 0.3465 19 6 2.8133 -8.3814 0.4597 20 6 2.3319 -9.6789 0.7035 21 6 0.9905 -9.8938 0.8084 22 17 0.4027 -11.5004 1.1028 23 6 0.0834 -8.8421 0.6886 24 6 0.5154 -7.5711 0.4576 25 6 1.8888 -7.3165 0.3383 26 6 2.2449 -3.6629 -0.0062 27 1 -0.4850 0.8401 0.0004 28 1 0.9908 -2.4819 -2.1407 29 1 -0.3679 -1.7787 -1.2285 30 1 -0.9415 -4.0155 -2.1820 31 1 -0.9962 -4.0165 -0.4022 32 1 1.3359 -4.9815 -2.1199 33 1 0.1877 -6.0214 -1.2435 34 1 4.1613 -4.8586 -0.1906 35 1 5.6569 -6.7917 0.0390 36 1 3.0223 -10.5034 0.8031 37 1 -0.9749 -9.0374 0.7804 38 1 -0.1964 -6.7638 0.3670 39 1 2.8643 -3.6158 0.8895 40 1 2.8791 -3.5946 -0.8901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596322986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:52 Heat of formation + Delta-G solvation = 47.917128 kcal Electronic energy + Delta-G solvation = -23700.596727 eV Core-core repulsion = 20312.516487 eV Total energy + Delta-G solvation = -3388.080240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14589 -38.74519 -37.43695 -36.19294 -34.62040 -32.57340 -31.29935 -30.72812 -29.84287 -29.14800 -25.26718 -24.77392 -23.74939 -22.94081 -21.61742 -21.19859 -19.08883 -18.12637 -17.32422 -17.23334 -16.19546 -15.41634 -15.00335 -14.75726 -14.59836 -14.39342 -14.30868 -14.01555 -13.69658 -13.17939 -13.07512 -12.77465 -12.70252 -12.55044 -12.05502 -11.95290 -11.57876 -11.22054 -11.14777 -11.04217 -10.92727 -10.80460 -10.39105 -10.32121 -10.03217 -9.68337 -9.52233 -9.32580 -8.97670 -8.79400 -8.64865 -8.42674 -7.70099 -6.10870 -4.17973 0.33505 0.72514 1.90143 1.91715 2.78583 3.23217 3.30914 3.33125 3.82845 4.07331 4.32371 4.35955 4.62989 4.78193 4.85649 4.98421 5.09403 5.18676 5.22900 5.43755 5.51868 5.55421 5.66436 5.76667 5.81241 5.84600 5.99442 6.05553 6.07404 6.21018 6.28916 6.35256 6.40638 6.49938 6.63423 6.72272 6.94675 7.14829 7.24427 7.47747 7.61194 7.86454 7.97257 7.98488 8.28642 8.84990 9.47520 10.95226 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.003171 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.973621 B = 8828.827402 C = 9636.841489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.055 3.945 10 H 0.036 0.964 11 C -0.114 4.114 12 C -0.121 4.121 13 C 0.062 3.938 14 N -0.487 5.487 15 C 0.194 3.806 16 C -0.246 4.246 17 C 0.164 3.836 18 N -0.508 5.508 19 C 0.157 3.843 20 C -0.097 4.097 21 C -0.008 4.008 22 Cl -0.072 7.072 23 C -0.135 4.135 24 C -0.056 4.056 25 C -0.117 4.117 26 C 0.061 3.939 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -16.455 -1.124 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.152 4.152 12 C -0.159 4.159 13 C -0.062 4.062 14 N -0.199 5.199 15 C 0.085 3.915 16 C -0.271 4.271 17 C -0.006 4.006 18 N -0.219 5.219 19 C 0.035 3.965 20 C -0.117 4.117 21 C -0.036 4.036 22 Cl -0.043 7.043 23 C -0.154 4.154 24 C -0.075 4.075 25 C -0.121 4.121 26 C -0.065 4.065 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.089 0.911 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.321 -17.162 -0.624 17.224 hybrid contribution 0.383 1.594 -0.526 1.722 sum 1.704 -15.568 -1.151 15.703 Atomic orbital electron populations 1.69872 1.05881 1.26599 1.50161 1.24921 0.94853 0.99076 0.94837 0.86591 0.79897 0.83391 0.78113 1.20687 1.21174 1.19883 1.21058 0.92874 0.90343 1.51441 0.92633 1.18704 0.92457 0.90093 0.95113 0.94551 1.21720 1.00262 0.94665 0.98562 1.21763 0.96941 0.96116 1.01034 1.22342 0.95519 1.00263 0.88041 1.58604 1.22731 1.02221 1.36380 1.19418 0.91485 0.90188 0.90440 1.22435 0.93700 1.02001 1.08936 1.22695 1.00194 0.87113 0.90566 1.68031 1.13445 1.23715 1.16709 1.18485 0.88993 0.92235 0.96794 1.20519 0.93529 0.96151 1.01467 1.20557 0.93612 0.86314 1.03120 1.98369 1.88785 1.22760 1.94367 1.20714 0.99808 0.91502 1.03356 1.21100 0.94547 0.96647 0.95174 1.18646 0.94896 0.93005 1.05526 1.22643 0.97025 0.86618 1.00185 0.92876 0.94716 0.88579 0.92520 0.91678 0.94027 0.90978 0.83718 0.82506 0.83971 0.84660 0.83540 0.91133 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 11.35 55.43 0.63 -23.35 16 2 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.25 8.56 -34.44 -0.29 -13.55 16 8 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.06 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.44 5.02 -26.61 -0.13 -2.58 16 12 C -0.12 -2.06 6.09 -26.65 -0.16 -2.23 16 13 C 0.06 0.97 4.86 -3.83 -0.02 0.95 16 14 N -0.49 -8.20 4.24 -170.71 -0.72 -8.92 16 15 C 0.19 3.03 5.41 -83.38 -0.45 2.58 16 16 C -0.25 -3.54 8.88 -39.24 -0.35 -3.89 16 17 C 0.16 2.16 11.13 -17.58 -0.20 1.96 16 18 N -0.51 -7.46 10.33 -11.10 -0.11 -7.57 16 19 C 0.16 2.31 6.60 -84.89 -0.56 1.75 16 20 C -0.10 -1.24 9.72 -39.44 -0.38 -1.62 16 21 C -0.01 -0.09 6.27 -39.86 -0.25 -0.34 16 22 Cl -0.07 -0.74 28.91 -51.86 -1.50 -2.24 16 23 C -0.13 -1.56 9.73 -39.88 -0.39 -1.95 16 24 C -0.06 -0.73 8.32 -39.58 -0.33 -1.06 16 25 C -0.12 -1.73 5.63 -106.65 -0.60 -2.33 16 26 C 0.06 1.15 3.39 -3.84 -0.01 1.14 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.34 6.15 -51.93 -0.32 2.02 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.98 5.45 -51.93 -0.28 0.69 16 34 H 0.15 1.99 6.02 -52.49 -0.32 1.67 16 35 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.15 1.87 6.19 -52.48 -0.32 1.54 16 39 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 40 H 0.04 0.74 7.28 -51.93 -0.38 0.36 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -26.96 332.48 -11.09 -38.05 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.94 Total: 2.22 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -4.43 Total: -18.48 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.21 Total: -39.84 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.96 -11.09 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.970 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds