Wall clock time and date at job start Tue Mar 31 2020 11:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46612 * 2 1 4 4 N 1.46495 * 109.46999 * 240.00167 * 2 1 3 5 5 C 1.34779 * 120.00488 * 85.00015 * 4 2 1 6 6 O 1.21580 * 119.99618 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00350 * 179.72331 * 5 4 2 8 8 C 1.39237 * 120.00246 * 175.98492 * 7 5 4 9 9 C 1.39478 * 119.83722 * 215.01923 * 8 7 5 10 10 C 1.36368 * 120.17254 * 179.75806 * 9 8 7 11 11 C 1.40866 * 119.82674 * 0.51796 * 10 9 8 12 12 C 1.41155 * 120.16637 * 179.71827 * 11 10 9 13 13 H 1.08001 * 119.99955 * 214.80588 * 12 11 10 14 14 C 1.39893 * 120.00153 * 34.80134 * 12 11 10 15 15 N 1.30885 * 119.99988 * 355.55963 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 175.55974 * 14 12 11 17 17 H 1.48499 * 109.47045 * 60.00199 * 16 14 12 18 18 H 1.48507 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47186 * 300.00135 * 16 14 12 20 20 C 1.40875 * 119.67257 * 359.73754 * 11 10 9 21 21 C 1.36374 * 119.82820 * 0.02562 * 20 11 10 22 22 C 1.50693 * 109.47052 * 119.99837 * 2 1 3 23 23 C 1.38426 * 122.54199 * 259.73947 * 22 2 1 24 24 C 1.33388 * 114.92263 * 179.76428 * 23 22 2 25 25 S 1.75889 * 109.59139 * 0.47174 * 24 23 22 26 26 C 1.33386 * 122.53920 * 80.02515 * 22 2 1 27 27 H 1.09003 * 109.46892 * 60.00096 * 1 2 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47085 * 299.99941 * 1 2 3 30 30 H 0.97008 * 119.99695 * 265.00147 * 4 2 1 31 31 H 0.97005 * 119.99878 * 355.98926 * 7 5 4 32 32 H 1.08005 * 119.91137 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.08919 * 180.25744 * 10 9 8 34 34 H 0.96993 * 120.00360 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.08444 * 179.97438 * 20 11 10 36 36 H 1.07992 * 119.91511 * 179.97438 * 21 20 11 37 37 H 1.08005 * 122.53569 * 359.97438 * 23 22 2 38 38 H 1.08003 * 125.20070 * 180.20873 * 24 23 22 39 39 H 1.08000 * 125.20700 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8575 1.1613 -2.4119 7 7 2.6016 -0.6522 -3.4562 8 6 2.6557 0.0191 -4.6749 9 6 2.4010 -0.6716 -5.8596 10 6 2.4473 -0.0198 -7.0565 11 6 2.7640 1.3523 -7.0953 12 6 2.8197 2.0327 -8.3308 13 1 3.5414 2.8222 -8.4804 14 6 1.9403 1.6844 -9.3615 15 7 1.1253 0.6713 -9.2119 16 14 1.9292 2.6652 -10.9512 17 1 3.2702 2.5956 -11.5851 18 1 0.9151 2.0977 -11.8758 19 1 1.5937 4.0815 -10.6567 20 6 3.0253 2.0419 -5.8950 21 6 2.9705 1.3776 -4.7053 22 6 2.0324 -0.7103 1.2304 23 6 2.4765 -0.0323 2.3525 24 6 2.8829 -0.8115 3.3560 25 16 2.7235 -2.5008 2.8927 26 6 2.0879 -2.0401 1.3188 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2490 -1.6318 -1.1526 31 1 2.8910 -1.5763 -3.3983 32 1 2.1623 -1.7245 -5.8285 33 1 2.2458 -0.5550 -7.9726 34 1 0.5152 0.4300 -9.9263 35 1 3.2692 3.0937 -5.9171 36 1 3.1709 1.9048 -3.7843 37 1 2.4897 1.0461 2.4123 38 1 3.2569 -0.4589 4.3059 39 1 1.7879 -2.7287 0.5427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619786737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:31 Heat of formation + Delta-G solvation = 29.368152 kcal Electronic energy + Delta-G solvation = -22591.913414 eV Core-core repulsion = 19205.072537 eV Total energy + Delta-G solvation = -3386.840877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16986 -38.74736 -37.29342 -34.88444 -34.21361 -32.89829 -30.71848 -29.50549 -29.18677 -28.52251 -25.19395 -24.73920 -22.54415 -21.35630 -20.68796 -20.09918 -19.05042 -18.45384 -17.37314 -17.15149 -16.79563 -15.65673 -15.14581 -14.90645 -14.67011 -14.12415 -13.98070 -13.76408 -13.29000 -13.13077 -12.91635 -12.68258 -12.63842 -12.52971 -12.07680 -11.90668 -11.65054 -11.52313 -11.30308 -11.09570 -10.98224 -10.85066 -10.68789 -10.06003 -9.50590 -9.42419 -9.23009 -9.10501 -8.95822 -8.83616 -8.66233 -7.48785 -6.78370 -6.56387 -4.28629 0.69583 1.35800 1.67704 2.34228 2.72373 3.07863 3.11705 3.13542 3.15596 3.22107 3.73803 4.02134 4.53189 4.63729 4.68813 4.75931 5.06113 5.10534 5.26288 5.36144 5.63492 5.63845 5.70311 5.85450 6.02708 6.11404 6.23917 6.24024 6.49678 6.64050 6.81761 6.87793 7.09839 7.20425 7.32026 7.45588 7.70488 7.91514 8.02097 8.14640 8.36301 8.50923 8.69070 8.97750 8.98459 9.13884 10.34886 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.002242 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.068729 B =12485.012529 C =12637.076973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.222 3.778 3 H 0.097 0.903 4 N -0.747 5.747 5 C 0.697 3.303 6 O -0.576 6.576 7 N -0.667 5.667 8 C 0.024 3.976 9 C -0.124 4.124 10 C -0.141 4.141 11 C 0.098 3.902 12 C -0.462 4.462 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.814 5.814 16 Si 0.915 3.085 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.204 4.204 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.211 4.211 25 S 0.094 5.906 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.390 0.610 31 H 0.391 0.609 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.277 0.723 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -7.755 20.541 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.114 3.886 3 H 0.115 0.885 4 N -0.404 5.404 5 C 0.397 3.603 6 O -0.453 6.453 7 N -0.313 5.313 8 C -0.068 4.068 9 C -0.144 4.144 10 C -0.161 4.161 11 C 0.095 3.905 12 C -0.493 4.493 13 H 0.093 0.907 14 C -0.145 4.145 15 N -0.442 5.442 16 Si 0.740 3.260 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.224 4.224 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.346 4.346 25 S 0.358 5.642 26 C -0.343 4.343 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.224 0.776 31 H 0.224 0.776 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.183 0.817 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.988 -8.176 21.098 22.648 hybrid contribution -0.270 0.737 -1.278 1.500 sum 0.718 -7.438 19.820 21.182 Atomic orbital electron populations 1.22185 0.94392 1.02195 1.02837 1.19247 0.93685 0.96170 0.79457 0.88463 1.45254 1.72939 1.13256 1.08931 1.15994 0.78632 0.85423 0.80219 1.90905 1.56618 1.13973 1.83827 1.42116 1.66635 1.15276 1.07273 1.17070 1.14210 0.93123 0.82425 1.20288 1.03789 0.97942 0.92396 1.21169 1.03958 0.94660 0.96287 1.17710 0.89196 0.91333 0.92251 1.19441 1.16453 1.16908 0.96510 0.90730 1.25862 0.94384 0.94637 0.99650 1.69758 1.17781 1.23457 1.33181 0.86262 0.78681 0.80479 0.80560 1.19115 1.20502 1.19140 1.20811 1.11196 0.98244 0.92171 1.20422 0.99616 0.93042 0.97566 1.19093 1.02290 0.93058 0.97117 1.20073 1.01325 1.01528 0.92483 1.25602 1.09317 0.95699 1.03979 1.84291 1.62868 1.07354 1.09705 1.25392 1.09049 0.98684 1.01164 0.91149 0.92593 0.91721 0.77617 0.77616 0.89213 0.85067 0.91190 0.88660 0.87336 0.83840 0.81739 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.47 37.16 0.35 -1.40 16 2 C 0.22 2.58 2.87 -69.08 -0.20 2.39 16 3 H 0.10 1.30 7.52 -51.93 -0.39 0.91 16 4 N -0.75 -9.47 5.05 -59.82 -0.30 -9.77 16 5 C 0.70 12.35 8.36 -86.92 -0.73 11.62 16 6 O -0.58 -12.64 13.42 5.29 0.07 -12.57 16 7 N -0.67 -11.85 5.31 -14.10 -0.07 -11.93 16 8 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 9 C -0.12 -2.85 9.90 -39.79 -0.39 -3.24 16 10 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 11 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 12 C -0.46 -12.50 9.02 -37.86 -0.34 -12.84 16 13 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 14 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 15 N -0.81 -21.47 10.60 55.55 0.59 -20.88 16 16 Si 0.92 19.28 29.56 -169.99 -5.03 14.26 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 21 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 22 C -0.10 -0.98 4.86 -106.25 -0.52 -1.50 16 23 C -0.12 -1.08 9.95 -41.21 -0.41 -1.49 16 24 C -0.21 -1.60 11.23 29.04 0.33 -1.28 16 25 S 0.09 0.71 23.34 -107.50 -2.51 -1.80 16 26 C -0.21 -1.74 10.21 29.04 0.30 -1.45 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.39 3.82 7.23 -40.82 -0.30 3.52 16 31 H 0.39 5.41 8.83 -40.82 -0.36 5.05 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.11 2.64 6.22 -52.49 -0.33 2.31 16 37 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.16 1.12 7.33 -52.49 -0.38 0.73 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -31.19 344.76 -10.53 -41.72 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.58 Total: 13.28 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.89 Total: -17.51 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.21 Total: -42.57 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.19 -10.53 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619786737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.084 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds