Wall clock time and date at job start Tue Mar 31 2020 11:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46612 * 2 1 4 4 N 1.46495 * 109.46999 * 240.00167 * 2 1 3 5 5 C 1.34779 * 120.00488 * 85.00015 * 4 2 1 6 6 O 1.21580 * 119.99618 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00350 * 179.72331 * 5 4 2 8 8 C 1.39237 * 120.00246 * 175.98492 * 7 5 4 9 9 C 1.39478 * 119.83722 * 215.01923 * 8 7 5 10 10 C 1.36368 * 120.17254 * 179.75806 * 9 8 7 11 11 C 1.40866 * 119.82674 * 0.51796 * 10 9 8 12 12 C 1.41155 * 120.16637 * 179.71827 * 11 10 9 13 13 H 1.08001 * 119.99955 * 214.80588 * 12 11 10 14 14 C 1.39893 * 120.00153 * 34.80134 * 12 11 10 15 15 N 1.30885 * 119.99988 * 355.55963 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 175.55974 * 14 12 11 17 17 H 1.48499 * 109.47045 * 60.00199 * 16 14 12 18 18 H 1.48507 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47186 * 300.00135 * 16 14 12 20 20 C 1.40875 * 119.67257 * 359.73754 * 11 10 9 21 21 C 1.36374 * 119.82820 * 0.02562 * 20 11 10 22 22 C 1.50693 * 109.47052 * 119.99837 * 2 1 3 23 23 C 1.38426 * 122.54199 * 259.73947 * 22 2 1 24 24 C 1.33388 * 114.92263 * 179.76428 * 23 22 2 25 25 S 1.75889 * 109.59139 * 0.47174 * 24 23 22 26 26 C 1.33386 * 122.53920 * 80.02515 * 22 2 1 27 27 H 1.09003 * 109.46892 * 60.00096 * 1 2 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47085 * 299.99941 * 1 2 3 30 30 H 0.97008 * 119.99695 * 265.00147 * 4 2 1 31 31 H 0.97005 * 119.99878 * 355.98926 * 7 5 4 32 32 H 1.08005 * 119.91137 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.08919 * 180.25744 * 10 9 8 34 34 H 0.96993 * 120.00360 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.08444 * 179.97438 * 20 11 10 36 36 H 1.07992 * 119.91511 * 179.97438 * 21 20 11 37 37 H 1.08005 * 122.53569 * 359.97438 * 23 22 2 38 38 H 1.08003 * 125.20070 * 180.20873 * 24 23 22 39 39 H 1.08000 * 125.20700 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8575 1.1613 -2.4119 7 7 2.6016 -0.6522 -3.4562 8 6 2.6557 0.0191 -4.6749 9 6 2.4010 -0.6716 -5.8596 10 6 2.4473 -0.0198 -7.0565 11 6 2.7640 1.3523 -7.0953 12 6 2.8197 2.0327 -8.3308 13 1 3.5414 2.8222 -8.4804 14 6 1.9403 1.6844 -9.3615 15 7 1.1253 0.6713 -9.2119 16 14 1.9292 2.6652 -10.9512 17 1 3.2702 2.5956 -11.5851 18 1 0.9151 2.0977 -11.8758 19 1 1.5937 4.0815 -10.6567 20 6 3.0253 2.0419 -5.8950 21 6 2.9705 1.3776 -4.7053 22 6 2.0324 -0.7103 1.2304 23 6 2.4765 -0.0323 2.3525 24 6 2.8829 -0.8115 3.3560 25 16 2.7235 -2.5008 2.8927 26 6 2.0879 -2.0401 1.3188 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2490 -1.6318 -1.1526 31 1 2.8910 -1.5763 -3.3983 32 1 2.1623 -1.7245 -5.8285 33 1 2.2458 -0.5550 -7.9726 34 1 0.5152 0.4300 -9.9263 35 1 3.2692 3.0937 -5.9171 36 1 3.1709 1.9048 -3.7843 37 1 2.4897 1.0461 2.4123 38 1 3.2569 -0.4589 4.3059 39 1 1.7879 -2.7287 0.5427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619786737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:30 Heat of formation + Delta-G solvation = 11.150826 kcal Electronic energy + Delta-G solvation = -22592.703377 eV Core-core repulsion = 19205.072537 eV Total energy + Delta-G solvation = -3387.630840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54192 -39.83876 -38.90425 -36.28287 -35.67814 -34.68731 -31.94260 -31.39407 -30.32953 -29.86556 -26.79391 -25.75433 -23.84081 -23.02582 -22.28318 -21.52600 -20.02241 -19.46417 -19.17048 -18.39663 -17.99181 -17.10173 -16.74058 -16.32995 -15.90347 -15.65540 -15.11585 -15.00913 -14.69510 -14.50562 -14.02416 -13.96305 -13.72057 -13.63963 -13.42793 -13.29303 -13.19496 -12.83354 -12.81809 -12.72006 -12.46099 -12.32133 -11.81163 -11.57763 -11.37774 -11.22077 -11.00996 -10.63306 -10.16550 -9.73967 -9.43515 -9.30426 -8.66628 -8.47454 -6.29766 0.06802 0.75570 0.87407 1.05976 1.17282 1.40474 1.48955 1.52425 1.58376 1.91072 2.22866 2.27124 2.84008 3.37874 3.71428 3.74842 4.06570 4.25557 4.33827 4.41978 4.47330 4.56112 4.67659 4.75649 4.87831 4.95651 5.07772 5.16089 5.17441 5.22929 5.33380 5.35497 5.45043 5.47033 5.63271 5.71894 5.84535 6.06126 6.14058 6.27403 6.42870 6.71125 6.99656 7.03990 7.15893 7.67006 8.45135 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.002242 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.068729 B =12485.012529 C =12637.076973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.224 3.776 3 H 0.075 0.925 4 N -0.723 5.723 5 C 0.695 3.305 6 O -0.620 6.620 7 N -0.659 5.659 8 C 0.043 3.957 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.065 3.935 12 C -0.499 4.499 13 H 0.072 0.928 14 C 0.027 3.973 15 N -0.843 5.843 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.266 1.266 20 C -0.220 4.220 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.209 4.209 25 S 0.118 5.882 26 C -0.210 4.210 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.408 0.592 31 H 0.414 0.586 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.284 0.716 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.186 0.814 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -9.465 21.965 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.116 3.884 3 H 0.094 0.906 4 N -0.380 5.380 5 C 0.396 3.604 6 O -0.500 6.500 7 N -0.307 5.307 8 C -0.051 4.051 9 C -0.141 4.141 10 C -0.178 4.178 11 C 0.063 3.937 12 C -0.530 4.530 13 H 0.090 0.910 14 C -0.185 4.185 15 N -0.471 5.471 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.193 1.193 19 H -0.191 1.191 20 C -0.240 4.240 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.172 4.172 24 C -0.345 4.345 25 S 0.382 5.618 26 C -0.346 4.346 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.251 0.749 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.166 0.834 38 H 0.203 0.797 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.962 -9.959 22.589 24.706 hybrid contribution -0.245 1.167 -1.472 1.895 sum 0.717 -8.792 21.117 22.885 Atomic orbital electron populations 1.22120 0.93972 1.02834 1.02077 1.19237 0.93982 0.95390 0.79774 0.90641 1.45055 1.71443 1.13953 1.07598 1.16144 0.78216 0.84946 0.81093 1.90886 1.58325 1.16183 1.84651 1.41885 1.66814 1.16147 1.05869 1.17078 1.11385 0.92538 0.84135 1.20524 1.02551 0.99539 0.91443 1.21160 1.05145 0.94436 0.97076 1.18025 0.90556 0.92282 0.92877 1.19677 1.17774 1.17858 0.97667 0.91010 1.26727 0.93433 0.95537 1.02780 1.69823 1.18229 1.24582 1.34442 0.85165 0.79189 0.78617 0.76137 1.18243 1.19258 1.19074 1.20929 1.11906 0.98521 0.92609 1.20520 1.00153 0.94224 0.96886 1.18890 1.03865 0.93504 0.96435 1.20189 1.02207 1.02096 0.92733 1.25909 1.08311 0.95751 1.04499 1.84270 1.61922 1.06969 1.08627 1.25633 1.08324 0.98471 1.02202 0.94213 0.91174 0.90161 0.75472 0.74948 0.85747 0.86293 0.90541 0.88719 0.87496 0.83443 0.79651 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 71.98 0.68 -2.55 16 2 C 0.22 4.97 2.87 44.25 0.13 5.10 16 3 H 0.08 2.04 7.52 -2.39 -0.02 2.02 16 4 N -0.72 -17.11 5.05 -461.43 -2.33 -19.44 16 5 C 0.70 23.98 8.36 179.05 1.50 25.48 16 6 O -0.62 -27.46 13.42 -3.97 -0.05 -27.51 16 7 N -0.66 -22.28 5.31 -316.79 -1.68 -23.96 16 8 C 0.04 1.90 6.31 38.57 0.24 2.14 16 9 C -0.12 -5.44 9.90 22.13 0.22 -5.22 16 10 C -0.16 -8.37 8.62 22.48 0.19 -8.17 16 11 C 0.06 3.66 5.55 -21.27 -0.12 3.54 16 12 C -0.50 -27.92 9.02 23.39 0.21 -27.71 16 13 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 14 C 0.03 1.40 5.42 85.23 0.46 1.86 16 15 N -0.84 -45.16 10.60 21.82 0.23 -44.93 16 16 Si 0.99 39.82 29.56 68.60 2.03 41.85 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 20 C -0.22 -11.74 9.74 22.48 0.22 -11.52 16 21 C -0.10 -4.84 8.61 22.14 0.19 -4.65 16 22 C -0.11 -1.96 4.86 -20.92 -0.10 -2.06 16 23 C -0.14 -2.24 9.95 21.22 0.21 -2.02 16 24 C -0.21 -2.66 11.23 66.72 0.75 -1.91 16 25 S 0.12 1.45 23.34 -56.49 -1.32 0.13 16 26 C -0.21 -2.95 10.21 66.72 0.68 -2.27 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.41 6.80 7.23 -92.70 -0.67 6.13 16 31 H 0.41 10.23 8.83 -92.70 -0.82 9.42 16 32 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 34 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 35 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 37 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.18 1.82 7.33 -2.91 -0.02 1.80 16 Total: -1.00 -69.54 344.76 1.95 -67.58 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.39 Total: 36.25 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 5.47 Total: -29.97 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -3.78 Total: -88.33 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.13 kcal Total: -69.54 1.95 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619786737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.735 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds