Wall clock time and date at job start Tue Mar 31 2020 11:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 C 1.50693 * 109.47200 * 239.99956 * 2 1 3 5 5 H 1.08007 * 120.00237 * 274.99083 * 4 2 1 6 6 C 1.37880 * 120.00132 * 94.99866 * 4 2 1 7 7 N 1.31519 * 120.00083 * 184.91818 * 6 4 2 8 8 Si 1.86794 * 120.00022 * 4.91188 * 6 4 2 9 9 H 1.48496 * 109.47152 * 84.83656 * 8 6 4 10 10 H 1.48504 * 109.47230 * 204.83817 * 8 6 4 11 11 H 1.48505 * 109.47045 * 324.83506 * 8 6 4 12 12 O 1.45202 * 109.47432 * 119.99551 * 2 1 3 13 13 C 1.34757 * 117.00267 * 270.00317 * 12 2 1 14 14 O 1.21501 * 119.99746 * 359.97438 * 13 12 2 15 15 C 1.47433 * 119.99770 * 179.97438 * 13 12 2 16 16 C 1.39825 * 120.05621 * 359.72928 * 15 13 12 17 17 C 1.36554 * 120.12451 * 179.71256 * 16 15 13 18 18 C 1.39589 * 120.23088 * 0.56113 * 17 16 15 19 19 C 1.48278 * 119.94940 * 179.73961 * 18 17 16 20 20 C 1.39773 * 120.92587 * 179.70178 * 19 18 17 21 21 N 1.32181 * 118.94637 * 179.74092 * 20 19 18 22 22 C 1.31838 * 120.95098 * 0.51904 * 21 20 19 23 23 N 1.31838 * 122.05526 * 359.74908 * 22 21 20 24 24 C 1.32185 * 120.94752 * 359.97438 * 23 22 21 25 25 C 1.39381 * 120.10559 * 359.71338 * 18 17 16 26 26 C 1.38065 * 119.87407 * 0.02562 * 25 18 17 27 27 F 1.35102 * 120.11627 * 179.97438 * 26 25 18 28 28 H 1.08995 * 109.47489 * 55.03479 * 1 2 3 29 29 H 1.09004 * 109.46761 * 175.03656 * 1 2 3 30 30 H 1.09001 * 109.47033 * 295.03037 * 1 2 3 31 31 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 32 32 H 1.07997 * 119.93610 * 359.97255 * 16 15 13 33 33 H 1.07997 * 119.88948 * 180.27230 * 17 16 15 34 34 H 1.08004 * 120.52358 * 359.96787 * 20 19 18 35 35 H 1.07998 * 118.97297 * 179.72927 * 22 21 20 36 36 H 1.08003 * 120.52284 * 179.97438 * 24 23 22 37 37 H 1.07996 * 120.06465 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3134 1.8790 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1054 2.3990 -3.6929 11 1 1.1984 2.3274 -1.4451 12 8 2.0141 -0.6844 1.1856 13 6 2.2180 0.0671 2.2854 14 8 1.9978 1.2616 2.2544 15 6 2.7083 -0.5602 3.5263 16 6 2.9567 -1.9357 3.5648 17 6 3.4164 -2.5172 4.7116 18 6 3.6298 -1.7449 5.8546 19 6 4.1236 -2.3838 7.0982 20 6 4.3502 -1.6289 8.2526 21 7 4.7857 -2.2395 9.3410 22 6 5.0154 -3.5377 9.3443 23 7 4.8201 -4.2855 8.2762 24 6 4.3808 -3.7567 7.1472 25 6 3.3799 -0.3739 5.8286 26 6 2.9201 0.2195 4.6699 27 9 2.6758 1.5479 4.6394 28 1 -0.3634 0.5889 -0.8421 29 1 -0.3633 -1.0239 -0.0889 30 1 -0.3633 0.4348 0.9312 31 1 2.9362 -0.1049 -4.2556 32 1 2.7886 -2.5386 2.6847 33 1 3.6112 -3.5792 4.7359 34 1 4.1688 -0.5642 8.2561 35 1 5.3750 -4.0030 10.2501 36 1 4.2236 -4.3757 6.2762 37 1 3.5456 0.2231 6.7132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774084864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:00 Heat of formation + Delta-G solvation = -55.546127 kcal Electronic energy + Delta-G solvation = -24765.300804 eV Core-core repulsion = 20808.564591 eV Total energy + Delta-G solvation = -3956.736213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.97797 -41.53033 -39.96945 -38.77804 -35.90063 -34.27812 -33.97630 -33.10465 -31.22621 -30.75594 -29.87745 -25.81707 -25.44314 -25.34175 -23.25037 -22.68579 -21.47029 -19.97279 -18.55826 -17.99915 -17.81540 -17.58881 -16.76387 -16.30508 -15.97683 -15.82665 -15.42210 -15.25297 -15.00306 -14.75185 -14.37432 -14.15060 -13.85150 -13.47827 -13.02275 -12.93129 -12.70395 -12.60975 -12.37186 -11.86610 -11.77780 -11.34563 -11.33338 -11.16817 -11.04227 -10.76903 -10.61217 -10.13434 -9.84753 -9.70998 -9.57673 -9.23180 -9.20579 -8.78714 -8.73811 -6.33572 -4.38130 -0.29632 0.58332 0.86672 0.99000 2.69789 3.14266 3.25950 3.27477 3.31840 3.32938 3.59548 3.60971 3.68572 3.77757 3.98636 4.11227 4.21579 4.21893 4.55275 4.66177 4.90888 4.91319 4.95246 5.15140 5.21116 5.38846 5.67891 5.74607 5.83893 5.93576 6.00332 6.11057 6.36867 6.38751 6.44271 6.48618 6.62165 7.08268 7.24482 7.42981 7.56640 8.13382 8.49534 8.75392 9.25197 10.77418 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.002830 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.683597 B = 9891.364077 C =10498.925157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.182 3.818 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.880 5.880 8 Si 0.868 3.132 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.260 1.260 12 O -0.340 6.340 13 C 0.491 3.509 14 O -0.508 6.508 15 C -0.144 4.144 16 C -0.025 4.025 17 C -0.133 4.133 18 C 0.009 3.991 19 C -0.151 4.151 20 C 0.162 3.838 21 N -0.516 5.516 22 C 0.293 3.707 23 N -0.515 5.515 24 C 0.165 3.835 25 C -0.161 4.161 26 C 0.166 3.834 27 F -0.111 7.111 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.271 0.729 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.172 0.828 35 H 0.199 0.801 36 H 0.175 0.825 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -4.929 22.623 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.516 5.516 8 Si 0.694 3.306 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.184 1.184 12 O -0.257 6.257 13 C 0.335 3.665 14 O -0.398 6.398 15 C -0.147 4.147 16 C -0.043 4.043 17 C -0.151 4.151 18 C 0.007 3.993 19 C -0.156 4.156 20 C -0.004 4.004 21 N -0.229 5.229 22 C 0.006 3.994 23 N -0.228 5.228 24 C -0.001 4.001 25 C -0.179 4.179 26 C 0.146 3.854 27 F -0.089 7.089 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.176 0.824 33 H 0.158 0.842 34 H 0.189 0.811 35 H 0.215 0.785 36 H 0.192 0.808 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.137 -4.955 23.206 23.935 hybrid contribution -0.328 1.786 -0.953 2.051 sum 2.809 -3.169 22.253 22.652 Atomic orbital electron populations 1.22241 0.97340 1.01703 0.99796 1.21067 0.91561 0.94234 0.80145 0.93410 1.20770 1.45626 0.96315 0.92898 0.89537 1.24908 0.93422 0.98648 0.95185 1.69846 1.43738 1.36307 1.01695 0.86974 0.80045 0.85725 0.77835 1.19505 1.20628 1.18435 1.86719 1.75632 1.42989 1.20314 1.20799 0.75559 0.85472 0.84705 1.90834 1.48413 1.15919 1.84680 1.19692 1.07548 0.94982 0.92434 1.21205 0.91696 0.92601 0.98836 1.20949 1.01534 1.00692 0.91886 1.18351 0.96753 0.92156 0.91996 1.20504 1.03450 0.96194 0.95413 1.23473 0.89280 1.00885 0.86793 1.68452 1.13100 1.12346 1.28998 1.25119 0.91316 0.86341 0.96600 1.68467 1.13376 1.40697 1.00267 1.23504 0.88928 0.91668 0.96044 1.21006 1.04427 0.94773 0.97722 1.17541 0.96610 0.78197 0.93051 1.91623 1.90890 1.29622 1.96759 0.91848 0.92286 0.95098 0.91883 0.82378 0.84174 0.81071 0.78479 0.80761 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.53 37.16 0.35 -2.99 16 2 C 0.18 4.49 2.23 -27.89 -0.06 4.43 16 3 H 0.05 1.24 4.31 -51.93 -0.22 1.02 16 4 C -0.52 -14.34 9.25 -34.44 -0.32 -14.66 16 5 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 8 Si 0.87 21.22 26.99 -169.99 -4.59 16.63 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 12 O -0.34 -7.56 9.10 -40.65 -0.37 -7.93 16 13 C 0.49 10.00 7.86 34.47 0.27 10.27 16 14 O -0.51 -11.72 14.59 -19.27 -0.28 -12.00 16 15 C -0.14 -2.22 5.88 -104.89 -0.62 -2.84 16 16 C -0.03 -0.30 9.55 -39.60 -0.38 -0.68 16 17 C -0.13 -1.17 9.38 -39.69 -0.37 -1.54 16 18 C 0.01 0.08 5.88 -104.84 -0.62 -0.54 16 19 C -0.15 -1.19 5.91 -104.62 -0.62 -1.80 16 20 C 0.16 1.25 10.70 -16.83 -0.18 1.07 16 21 N -0.52 -4.43 10.42 -14.30 -0.15 -4.58 16 22 C 0.29 2.24 12.27 -92.08 -1.13 1.11 16 23 N -0.52 -4.38 10.42 -14.30 -0.15 -4.53 16 24 C 0.16 1.23 10.70 -16.83 -0.18 1.05 16 25 C -0.16 -1.58 9.42 -39.22 -0.37 -1.95 16 26 C 0.17 2.29 7.28 -38.98 -0.28 2.00 16 27 F -0.11 -1.78 15.54 2.25 0.03 -1.74 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.16 1.84 7.59 -52.49 -0.40 1.44 16 33 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 34 H 0.17 0.92 6.33 -52.48 -0.33 0.59 16 35 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.18 0.86 6.33 -52.48 -0.33 0.53 16 37 H 0.15 1.01 6.28 -52.49 -0.33 0.68 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -33.36 329.31 -7.57 -40.93 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.21 Total: -2.02 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.60 Total: -4.83 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.48 Total: -34.02 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.65 Total: -19.92 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.36 -7.57 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774084864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.614 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds