Wall clock time and date at job start Tue Mar 31 2020 11:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 C 1.50693 * 109.47200 * 239.99956 * 2 1 3 5 5 H 1.08007 * 120.00237 * 274.99083 * 4 2 1 6 6 C 1.37880 * 120.00132 * 94.99866 * 4 2 1 7 7 N 1.31519 * 120.00083 * 184.91818 * 6 4 2 8 8 Si 1.86794 * 120.00022 * 4.91188 * 6 4 2 9 9 H 1.48496 * 109.47152 * 84.83656 * 8 6 4 10 10 H 1.48504 * 109.47230 * 204.83817 * 8 6 4 11 11 H 1.48505 * 109.47045 * 324.83506 * 8 6 4 12 12 O 1.45202 * 109.47432 * 119.99551 * 2 1 3 13 13 C 1.34757 * 117.00267 * 270.00317 * 12 2 1 14 14 O 1.21501 * 119.99746 * 359.97438 * 13 12 2 15 15 C 1.47433 * 119.99770 * 179.97438 * 13 12 2 16 16 C 1.39825 * 120.05621 * 359.72928 * 15 13 12 17 17 C 1.36554 * 120.12451 * 179.71256 * 16 15 13 18 18 C 1.39589 * 120.23088 * 0.56113 * 17 16 15 19 19 C 1.48278 * 119.94940 * 179.73961 * 18 17 16 20 20 C 1.39773 * 120.92587 * 179.70178 * 19 18 17 21 21 N 1.32181 * 118.94637 * 179.74092 * 20 19 18 22 22 C 1.31838 * 120.95098 * 0.51904 * 21 20 19 23 23 N 1.31838 * 122.05526 * 359.74908 * 22 21 20 24 24 C 1.32185 * 120.94752 * 359.97438 * 23 22 21 25 25 C 1.39381 * 120.10559 * 359.71338 * 18 17 16 26 26 C 1.38065 * 119.87407 * 0.02562 * 25 18 17 27 27 F 1.35102 * 120.11627 * 179.97438 * 26 25 18 28 28 H 1.08995 * 109.47489 * 55.03479 * 1 2 3 29 29 H 1.09004 * 109.46761 * 175.03656 * 1 2 3 30 30 H 1.09001 * 109.47033 * 295.03037 * 1 2 3 31 31 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 32 32 H 1.07997 * 119.93610 * 359.97255 * 16 15 13 33 33 H 1.07997 * 119.88948 * 180.27230 * 17 16 15 34 34 H 1.08004 * 120.52358 * 359.96787 * 20 19 18 35 35 H 1.07998 * 118.97297 * 179.72927 * 22 21 20 36 36 H 1.08003 * 120.52284 * 179.97438 * 24 23 22 37 37 H 1.07996 * 120.06465 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3134 1.8790 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1054 2.3990 -3.6929 11 1 1.1984 2.3274 -1.4451 12 8 2.0141 -0.6844 1.1856 13 6 2.2180 0.0671 2.2854 14 8 1.9978 1.2616 2.2544 15 6 2.7083 -0.5602 3.5263 16 6 2.9567 -1.9357 3.5648 17 6 3.4164 -2.5172 4.7116 18 6 3.6298 -1.7449 5.8546 19 6 4.1236 -2.3838 7.0982 20 6 4.3502 -1.6289 8.2526 21 7 4.7857 -2.2395 9.3410 22 6 5.0154 -3.5377 9.3443 23 7 4.8201 -4.2855 8.2762 24 6 4.3808 -3.7567 7.1472 25 6 3.3799 -0.3739 5.8286 26 6 2.9201 0.2195 4.6699 27 9 2.6758 1.5479 4.6394 28 1 -0.3634 0.5889 -0.8421 29 1 -0.3633 -1.0239 -0.0889 30 1 -0.3633 0.4348 0.9312 31 1 2.9362 -0.1049 -4.2556 32 1 2.7886 -2.5386 2.6847 33 1 3.6112 -3.5792 4.7359 34 1 4.1688 -0.5642 8.2561 35 1 5.3750 -4.0030 10.2501 36 1 4.2236 -4.3757 6.2762 37 1 3.5456 0.2231 6.7132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774084864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:00 Heat of formation + Delta-G solvation = -74.944738 kcal Electronic energy + Delta-G solvation = -24766.141991 eV Core-core repulsion = 20808.564591 eV Total energy + Delta-G solvation = -3957.577400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.08703 -42.13580 -41.43314 -39.83975 -37.64060 -35.25489 -34.85355 -34.69663 -32.66842 -31.99051 -30.83802 -27.49552 -26.65945 -25.97782 -24.40115 -23.52322 -22.78284 -21.60501 -19.80549 -18.99863 -18.73671 -18.57604 -18.29877 -17.78401 -17.22583 -16.96912 -16.53347 -16.39606 -16.16549 -15.84030 -15.47144 -14.96166 -14.74346 -14.60622 -14.53334 -14.44441 -14.18285 -13.83364 -13.60341 -13.49408 -13.06849 -12.94523 -12.63743 -12.59794 -12.06899 -11.97801 -11.92200 -11.58310 -11.46626 -11.40583 -11.21007 -10.90231 -10.28035 -10.09235 -9.58304 -8.49220 -6.58464 -1.09458 -0.01374 0.03836 0.17679 1.22591 1.27620 1.37264 1.45799 1.75520 2.17491 2.41589 2.82473 2.85521 2.88432 3.10555 3.19051 3.30289 3.42665 3.49303 3.72836 3.86195 3.95210 4.10892 4.18679 4.36282 4.53509 4.55232 4.57958 4.65307 4.74496 4.88038 4.91951 5.05112 5.16185 5.28114 5.31766 5.35016 5.52391 5.56776 5.89359 6.10536 6.50190 6.77754 7.01361 7.08887 8.65644 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.002830 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.683597 B = 9891.364077 C =10498.925157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.039 3.961 7 N -0.919 5.919 8 Si 0.923 3.077 9 H -0.272 1.272 10 H -0.265 1.265 11 H -0.253 1.253 12 O -0.347 6.347 13 C 0.487 3.513 14 O -0.544 6.544 15 C -0.179 4.179 16 C -0.025 4.025 17 C -0.117 4.117 18 C 0.033 3.967 19 C -0.161 4.161 20 C 0.163 3.837 21 N -0.536 5.536 22 C 0.293 3.707 23 N -0.534 5.534 24 C 0.168 3.832 25 C -0.148 4.148 26 C 0.149 3.851 27 F -0.131 7.131 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.277 0.723 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.223 0.777 36 H 0.200 0.800 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -5.572 25.300 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.052 0.948 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.163 4.163 7 N -0.557 5.557 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.177 1.177 12 O -0.263 6.263 13 C 0.334 3.666 14 O -0.437 6.437 15 C -0.181 4.181 16 C -0.043 4.043 17 C -0.135 4.135 18 C 0.031 3.969 19 C -0.166 4.166 20 C -0.003 4.003 21 N -0.249 5.249 22 C 0.008 3.992 23 N -0.247 5.247 24 C 0.003 3.997 25 C -0.167 4.167 26 C 0.129 3.871 27 F -0.109 7.109 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.209 0.791 35 H 0.239 0.761 36 H 0.217 0.783 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.582 -5.613 25.900 26.742 hybrid contribution -0.378 1.800 -1.547 2.403 sum 3.204 -3.813 24.353 24.857 Atomic orbital electron populations 1.22146 0.95238 1.02476 1.00611 1.20873 0.93089 0.92982 0.80133 0.94815 1.20882 1.45853 0.95116 0.94653 0.92658 1.25587 0.93125 1.02839 0.94745 1.69938 1.45152 1.38111 1.02465 0.86112 0.80063 0.80627 0.78625 1.19688 1.18953 1.17681 1.86658 1.76143 1.42950 1.20552 1.21628 0.74518 0.85192 0.85278 1.90796 1.50269 1.17365 1.85232 1.19533 1.11207 0.96603 0.90725 1.21237 0.91913 0.91069 1.00121 1.21299 0.99313 1.02516 0.90332 1.18488 0.94456 0.91627 0.92326 1.20374 1.04825 0.96491 0.94873 1.23868 0.88052 1.01914 0.86487 1.68543 1.14061 1.12849 1.29434 1.25691 0.90026 0.86234 0.97295 1.68566 1.14308 1.41042 1.00811 1.23957 0.87445 0.91776 0.96566 1.21266 1.02775 0.95474 0.97147 1.17819 0.97969 0.77425 0.93875 1.91567 1.91323 1.31123 1.96914 0.91608 0.91460 0.93724 0.91382 0.82624 0.80248 0.79129 0.76095 0.78314 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 9.53 71.98 0.69 -5.73 16 2 C 0.18 9.16 2.23 29.85 0.07 9.23 16 3 H 0.03 1.79 4.31 -2.39 -0.01 1.78 16 4 C -0.53 -30.05 9.25 25.60 0.24 -29.82 16 5 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 6 C 0.04 2.20 5.47 84.65 0.46 2.66 16 7 N -0.92 -54.79 13.96 21.45 0.30 -54.49 16 8 Si 0.92 44.15 26.99 68.60 1.85 46.00 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.25 -11.72 6.82 99.48 0.68 -11.04 16 12 O -0.35 -15.83 9.10 -56.67 -0.52 -16.34 16 13 C 0.49 20.38 7.86 70.24 0.55 20.93 16 14 O -0.54 -25.85 14.59 19.83 0.29 -25.56 16 15 C -0.18 -5.49 5.88 -20.04 -0.12 -5.61 16 16 C -0.03 -0.57 9.55 22.26 0.21 -0.36 16 17 C -0.12 -1.67 9.38 22.20 0.21 -1.46 16 18 C 0.03 0.46 5.88 -20.00 -0.12 0.34 16 19 C -0.16 -1.90 5.91 -19.86 -0.12 -2.02 16 20 C 0.16 1.93 10.70 85.01 0.91 2.84 16 21 N -0.54 -7.58 10.42 -199.14 -2.08 -9.66 16 22 C 0.29 3.61 12.27 180.86 2.22 5.83 16 23 N -0.53 -7.32 10.42 -199.14 -2.08 -9.40 16 24 C 0.17 1.86 10.70 85.01 0.91 2.77 16 25 C -0.15 -2.52 9.42 22.50 0.21 -2.31 16 26 C 0.15 4.00 7.28 22.66 0.17 4.16 16 27 F -0.13 -4.25 15.54 44.97 0.70 -3.55 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.16 3.55 7.59 -2.91 -0.02 3.52 16 33 H 0.18 1.12 6.27 -2.91 -0.02 1.10 16 34 H 0.19 1.32 6.33 -2.91 -0.02 1.30 16 35 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.20 0.99 6.33 -2.91 -0.02 0.97 16 37 H 0.18 1.82 6.28 -2.91 -0.02 1.80 16 Total: -1.00 -75.19 329.31 6.07 -69.12 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.11 Total: 2.42 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.49 Total: 1.46 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -3.85 Total: -73.55 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.23 Total: -41.90 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.70 Total: -3.55 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 46.00 kcal Total: -75.19 6.07 -69.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774084864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.825 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds