Wall clock time and date at job start Tue Mar 31 2020 11:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.50698 * 109.47221 * 270.00659 * 3 2 1 5 5 N 1.29026 * 124.91970 * 89.69629 * 4 3 2 6 6 C 1.31782 * 117.12828 * 179.81124 * 5 4 3 7 7 C 1.33639 * 114.49641 * 0.47270 * 6 5 4 8 8 S 1.70978 * 124.91431 * 269.99555 * 4 3 2 9 9 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 10 10 O 1.21280 * 119.99871 * 179.97438 * 9 2 1 11 11 C 1.50701 * 119.99906 * 359.97438 * 9 2 1 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 2 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 27 27 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 28 28 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 29 29 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 30 30 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 31 31 H 1.07997 * 122.75373 * 180.22303 * 6 5 4 32 32 H 1.08000 * 126.03832 * 179.71611 * 7 6 5 33 33 H 1.08999 * 109.47299 * 60.00523 * 11 9 2 34 34 H 1.08998 * 109.47401 * 299.99992 * 11 9 2 35 35 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 36 36 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 37 37 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 38 38 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 39 39 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 1.6529 2.4415 -2.1189 6 6 2.0274 2.7331 -3.3483 7 6 3.1999 2.2041 -3.7105 8 16 3.8259 1.2853 -2.3435 9 6 2.1388 -1.1673 -0.0005 10 8 3.3516 -1.1674 -0.0010 11 6 1.3852 -2.4724 -0.0005 12 6 2.3645 -3.6178 -0.0005 13 6 2.7394 -4.2063 -1.1869 14 6 3.6348 -5.2644 -1.1892 15 6 4.1679 -5.7378 0.0000 16 6 3.8129 -5.1600 1.1973 17 6 2.9039 -4.0857 1.2118 18 6 2.5314 -3.4845 2.4362 19 1 1.5566 -3.0316 2.5408 20 6 3.4259 -3.4762 3.5123 21 7 2.9912 -3.2352 4.7224 22 14 5.2408 -3.8095 3.2209 23 1 5.5014 -5.2667 3.3373 24 1 5.6169 -3.3463 1.8611 25 1 6.0467 -3.0801 4.2328 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3635 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5137 31 1 1.4334 3.3458 -4.0102 32 1 3.6790 2.3189 -4.6716 33 1 0.7583 -2.5299 -0.8903 34 1 0.7589 -2.5303 0.8897 35 1 2.3307 -3.8453 -2.1192 36 1 3.9196 -5.7234 -2.1245 37 1 4.8651 -6.5625 -0.0136 38 1 4.2297 -5.5300 2.1223 39 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776976256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:42 Heat of formation + Delta-G solvation = 32.982025 kcal Electronic energy + Delta-G solvation = -23839.280001 eV Core-core repulsion = 20452.595833 eV Total energy + Delta-G solvation = -3386.684168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93874 -39.23460 -37.66645 -35.25755 -33.64309 -32.22567 -30.99578 -30.13247 -28.32123 -26.95539 -25.84812 -24.56030 -23.68326 -21.39372 -20.42440 -19.77646 -18.64522 -18.06339 -18.01325 -16.56578 -16.03925 -15.84251 -15.34840 -15.09351 -14.40052 -14.12140 -14.09426 -13.79913 -13.59816 -13.08420 -13.01957 -12.71134 -12.45428 -12.34173 -12.12970 -11.95919 -11.68887 -11.39817 -11.26566 -11.22220 -10.76974 -10.27325 -10.12652 -9.74511 -9.68227 -9.49941 -9.30016 -9.24137 -8.94697 -8.89730 -8.53177 -7.63622 -7.56870 -7.15773 -4.47694 0.63339 1.38793 1.81847 2.56777 2.72997 2.77596 3.19220 3.28275 3.40943 3.47707 3.68364 4.11665 4.13552 4.62299 4.92975 5.06239 5.10143 5.23653 5.34776 5.43402 5.49758 5.60188 5.65573 5.78077 5.82756 5.91837 6.08827 6.09369 6.21897 6.23485 6.54804 6.63261 6.77088 7.08468 7.37011 7.52680 7.62178 7.68307 7.70519 7.76002 7.87780 8.03602 8.42795 8.62658 8.70509 8.83577 10.09985 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.004494 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.120267 B = 6228.692904 C = 6678.534181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.623 5.623 3 C 0.192 3.808 4 C 0.029 3.971 5 N -0.473 5.473 6 C 0.033 3.967 7 C -0.277 4.277 8 S 0.173 5.827 9 C 0.520 3.480 10 O -0.508 6.508 11 C -0.067 4.067 12 C -0.173 4.173 13 C -0.067 4.067 14 C -0.245 4.245 15 C -0.075 4.075 16 C -0.244 4.244 17 C 0.116 3.884 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.048 3.952 21 N -0.823 5.823 22 Si 1.070 2.930 23 H -0.280 1.280 24 H -0.258 1.258 25 H -0.293 1.293 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 9.702 -11.410 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.360 5.360 3 C 0.065 3.935 4 C -0.250 4.250 5 N -0.189 5.189 6 C -0.120 4.120 7 C -0.417 4.417 8 S 0.427 5.573 9 C 0.309 3.691 10 O -0.381 6.381 11 C -0.106 4.106 12 C -0.175 4.175 13 C -0.085 4.085 14 C -0.264 4.264 15 C -0.094 4.094 16 C -0.263 4.263 17 C 0.113 3.887 18 C -0.541 4.541 19 H 0.092 0.908 20 C -0.171 4.171 21 N -0.446 5.446 22 Si 0.896 3.104 23 H -0.207 1.207 24 H -0.182 1.182 25 H -0.221 1.221 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.771 9.115 -10.082 13.613 hybrid contribution -2.284 0.832 -1.486 2.849 sum -3.055 9.947 -11.568 15.559 Atomic orbital electron populations 1.21777 0.79339 1.03147 1.01871 1.47998 1.07024 1.04866 1.76093 1.19833 0.99921 0.86618 0.87145 1.27754 0.94834 0.99564 1.02802 1.66305 1.31784 1.14706 1.06109 1.21743 0.95418 1.02247 0.92546 1.27259 1.02317 1.07007 1.05164 1.84669 1.23053 1.45525 1.04083 1.21179 0.88521 0.84781 0.74616 1.90677 1.13853 1.86773 1.46788 1.20282 0.97584 0.90231 1.02517 1.19026 1.05813 0.99369 0.93243 1.20409 0.96873 0.95707 0.95553 1.20314 1.06387 1.03344 0.96361 1.20603 0.97738 0.97932 0.93099 1.21123 1.07440 1.01010 0.96751 1.17493 0.89315 0.89527 0.92322 1.20518 1.02459 1.34514 0.96646 0.90771 1.27139 1.07421 0.91312 0.91222 1.70572 1.20136 1.31915 1.21960 0.83653 0.72724 0.76741 0.77240 1.20678 1.18172 1.22069 0.92455 0.91014 0.90987 0.87913 0.87607 0.81122 0.80880 0.90580 0.88796 0.89345 0.89054 0.88904 0.87803 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.24 59.85 0.61 1.59 16 2 N -0.62 -9.66 2.86 -182.96 -0.52 -10.18 16 3 C 0.19 2.71 5.98 -5.19 -0.03 2.68 16 4 C 0.03 0.41 6.97 -13.46 -0.09 0.32 16 5 N -0.47 -6.46 10.54 -11.86 -0.13 -6.58 16 6 C 0.03 0.37 11.35 -19.18 -0.22 0.16 16 7 C -0.28 -3.05 11.37 29.12 0.33 -2.71 16 8 S 0.17 2.36 23.18 -107.50 -2.49 -0.13 16 9 C 0.52 10.10 7.67 -10.98 -0.08 10.02 16 10 O -0.51 -11.72 15.61 5.56 0.09 -11.63 16 11 C -0.07 -1.27 3.91 -29.03 -0.11 -1.39 16 12 C -0.17 -3.97 4.43 -103.91 -0.46 -4.43 16 13 C -0.07 -1.45 9.66 -39.66 -0.38 -1.84 16 14 C -0.24 -5.26 10.05 -39.29 -0.39 -5.66 16 15 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 16 C -0.24 -6.06 7.26 -38.87 -0.28 -6.34 16 17 C 0.12 2.97 5.13 -106.83 -0.55 2.42 16 18 C -0.51 -13.57 8.80 -37.75 -0.33 -13.90 16 19 H 0.07 1.97 6.60 -52.49 -0.35 1.62 16 20 C 0.05 1.28 5.42 -17.34 -0.09 1.18 16 21 N -0.82 -22.32 13.65 55.55 0.76 -21.56 16 22 Si 1.07 25.80 24.89 -169.99 -4.23 21.57 16 23 H -0.28 -6.35 6.45 56.52 0.36 -5.99 16 24 H -0.26 -6.45 7.01 56.52 0.40 -6.05 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.11 1.61 7.42 -51.93 -0.39 1.23 16 31 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 34 H 0.09 1.79 6.48 -51.93 -0.34 1.46 16 35 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 2.57 4.43 -52.48 -0.23 2.33 16 39 H 0.28 7.41 8.73 -40.82 -0.36 7.05 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -31.15 341.56 -8.45 -39.60 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.58 Total: 3.75 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.49 Total: -19.99 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.11 Total: -38.32 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.23 Total: 21.57 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.49 Total: -0.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.15 -8.45 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776976256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.586 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds