Wall clock time and date at job start Tue Mar 31 2020 11:48:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46501 * 120.00443 * 2 1
4 4 C 1.50698 * 109.47221 * 270.00659 * 3 2 1
5 5 N 1.29026 * 124.91970 * 89.69629 * 4 3 2
6 6 C 1.31782 * 117.12828 * 179.81124 * 5 4 3
7 7 C 1.33639 * 114.49641 * 0.47270 * 6 5 4
8 8 S 1.70978 * 124.91431 * 269.99555 * 4 3 2
9 9 C 1.34784 * 119.99589 * 180.02562 * 2 1 3
10 10 O 1.21280 * 119.99871 * 179.97438 * 9 2 1
11 11 C 1.50701 * 119.99906 * 359.97438 * 9 2 1
12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 2
13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9
14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11
15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12
16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13
17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9
18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11
19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12
20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12
21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17
22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17
23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18
24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18
25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18
26 26 H 1.09005 * 109.46741 * 270.00052 * 1 2 3
27 27 H 1.09001 * 109.47242 * 29.99066 * 1 2 3
28 28 H 1.08995 * 109.47992 * 149.99628 * 1 2 3
29 29 H 1.08995 * 109.46783 * 30.00742 * 3 2 1
30 30 H 1.09000 * 109.46921 * 150.00704 * 3 2 1
31 31 H 1.07997 * 122.75373 * 180.22303 * 6 5 4
32 32 H 1.08000 * 126.03832 * 179.71611 * 7 6 5
33 33 H 1.08999 * 109.47299 * 60.00523 * 11 9 2
34 34 H 1.08998 * 109.47401 * 299.99992 * 11 9 2
35 35 H 1.08005 * 119.87130 * 0.02562 * 13 12 11
36 36 H 1.08001 * 119.74473 * 179.69460 * 14 13 12
37 37 H 1.08002 * 119.87493 * 180.02562 * 15 14 13
38 38 H 1.08003 * 120.12022 * 180.02562 * 16 15 14
39 39 H 0.97004 * 119.99819 * 355.45620 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.4487 1.7038 -1.4208
5 7 1.6529 2.4415 -2.1189
6 6 2.0274 2.7331 -3.3483
7 6 3.1999 2.2041 -3.7105
8 16 3.8259 1.2853 -2.3435
9 6 2.1388 -1.1673 -0.0005
10 8 3.3516 -1.1674 -0.0010
11 6 1.3852 -2.4724 -0.0005
12 6 2.3645 -3.6178 -0.0005
13 6 2.7394 -4.2063 -1.1869
14 6 3.6348 -5.2644 -1.1892
15 6 4.1679 -5.7378 0.0000
16 6 3.8129 -5.1600 1.1973
17 6 2.9039 -4.0857 1.2118
18 6 2.5314 -3.4845 2.4362
19 1 1.5566 -3.0316 2.5408
20 6 3.4259 -3.4762 3.5123
21 7 2.9912 -3.2352 4.7224
22 14 5.2408 -3.8095 3.2209
23 1 5.5014 -5.2667 3.3373
24 1 5.6169 -3.3463 1.8611
25 1 6.0467 -3.0801 4.2328
26 1 -0.3633 0.0000 1.0277
27 1 -0.3634 0.8901 -0.5137
28 1 -0.3635 -0.8899 -0.5138
29 1 1.6086 2.0283 0.5139
30 1 3.1500 1.1382 0.5137
31 1 1.4334 3.3458 -4.0102
32 1 3.6790 2.3189 -4.6716
33 1 0.7583 -2.5299 -0.8903
34 1 0.7589 -2.5303 0.8897
35 1 2.3307 -3.8453 -2.1192
36 1 3.9196 -5.7234 -2.1245
37 1 4.8651 -6.5625 -0.0136
38 1 4.2297 -5.5300 2.1223
39 1 2.0617 -2.9974 4.8655
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776976256.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:42
Heat of formation + Delta-G solvation = 32.982025 kcal
Electronic energy + Delta-G solvation = -23839.280001 eV
Core-core repulsion = 20452.595833 eV
Total energy + Delta-G solvation = -3386.684168 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.099 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-39.93874 -39.23460 -37.66645 -35.25755 -33.64309 -32.22567 -30.99578 -30.13247
-28.32123 -26.95539 -25.84812 -24.56030 -23.68326 -21.39372 -20.42440 -19.77646
-18.64522 -18.06339 -18.01325 -16.56578 -16.03925 -15.84251 -15.34840 -15.09351
-14.40052 -14.12140 -14.09426 -13.79913 -13.59816 -13.08420 -13.01957 -12.71134
-12.45428 -12.34173 -12.12970 -11.95919 -11.68887 -11.39817 -11.26566 -11.22220
-10.76974 -10.27325 -10.12652 -9.74511 -9.68227 -9.49941 -9.30016 -9.24137
-8.94697 -8.89730 -8.53177 -7.63622 -7.56870 -7.15773 -4.47694 0.63339
1.38793 1.81847 2.56777 2.72997 2.77596 3.19220 3.28275 3.40943
3.47707 3.68364 4.11665 4.13552 4.62299 4.92975 5.06239 5.10143
5.23653 5.34776 5.43402 5.49758 5.60188 5.65573 5.78077 5.82756
5.91837 6.08827 6.09369 6.21897 6.23485 6.54804 6.63261 6.77088
7.08468 7.37011 7.52680 7.62178 7.68307 7.70519 7.76002 7.87780
8.03602 8.42795 8.62658 8.70509 8.83577 10.09985
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.015629 B = 0.004494 C = 0.004192
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1791.120267 B = 6228.692904 C = 6678.534181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.623 5.623
3 C 0.192 3.808
4 C 0.029 3.971
5 N -0.473 5.473
6 C 0.033 3.967
7 C -0.277 4.277
8 S 0.173 5.827
9 C 0.520 3.480
10 O -0.508 6.508
11 C -0.067 4.067
12 C -0.173 4.173
13 C -0.067 4.067
14 C -0.245 4.245
15 C -0.075 4.075
16 C -0.244 4.244
17 C 0.116 3.884
18 C -0.512 4.512
19 H 0.074 0.926
20 C 0.048 3.952
21 N -0.823 5.823
22 Si 1.070 2.930
23 H -0.280 1.280
24 H -0.258 1.258
25 H -0.293 1.293
26 H 0.057 0.943
27 H 0.071 0.929
28 H 0.071 0.929
29 H 0.103 0.897
30 H 0.106 0.894
31 H 0.172 0.828
32 H 0.174 0.826
33 H 0.076 0.924
34 H 0.094 0.906
35 H 0.088 0.912
36 H 0.091 0.909
37 H 0.093 0.907
38 H 0.104 0.896
39 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.219 9.702 -11.410 15.319
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.360 5.360
3 C 0.065 3.935
4 C -0.250 4.250
5 N -0.189 5.189
6 C -0.120 4.120
7 C -0.417 4.417
8 S 0.427 5.573
9 C 0.309 3.691
10 O -0.381 6.381
11 C -0.106 4.106
12 C -0.175 4.175
13 C -0.085 4.085
14 C -0.264 4.264
15 C -0.094 4.094
16 C -0.263 4.263
17 C 0.113 3.887
18 C -0.541 4.541
19 H 0.092 0.908
20 C -0.171 4.171
21 N -0.446 5.446
22 Si 0.896 3.104
23 H -0.207 1.207
24 H -0.182 1.182
25 H -0.221 1.221
26 H 0.075 0.925
27 H 0.090 0.910
28 H 0.090 0.910
29 H 0.121 0.879
30 H 0.124 0.876
31 H 0.189 0.811
32 H 0.191 0.809
33 H 0.094 0.906
34 H 0.112 0.888
35 H 0.107 0.893
36 H 0.109 0.891
37 H 0.111 0.889
38 H 0.122 0.878
39 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -0.771 9.115 -10.082 13.613
hybrid contribution -2.284 0.832 -1.486 2.849
sum -3.055 9.947 -11.568 15.559
Atomic orbital electron populations
1.21777 0.79339 1.03147 1.01871 1.47998 1.07024 1.04866 1.76093
1.19833 0.99921 0.86618 0.87145 1.27754 0.94834 0.99564 1.02802
1.66305 1.31784 1.14706 1.06109 1.21743 0.95418 1.02247 0.92546
1.27259 1.02317 1.07007 1.05164 1.84669 1.23053 1.45525 1.04083
1.21179 0.88521 0.84781 0.74616 1.90677 1.13853 1.86773 1.46788
1.20282 0.97584 0.90231 1.02517 1.19026 1.05813 0.99369 0.93243
1.20409 0.96873 0.95707 0.95553 1.20314 1.06387 1.03344 0.96361
1.20603 0.97738 0.97932 0.93099 1.21123 1.07440 1.01010 0.96751
1.17493 0.89315 0.89527 0.92322 1.20518 1.02459 1.34514 0.96646
0.90771 1.27139 1.07421 0.91312 0.91222 1.70572 1.20136 1.31915
1.21960 0.83653 0.72724 0.76741 0.77240 1.20678 1.18172 1.22069
0.92455 0.91014 0.90987 0.87913 0.87607 0.81122 0.80880 0.90580
0.88796 0.89345 0.89054 0.88904 0.87803 0.90602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.98 10.24 59.85 0.61 1.59 16
2 N -0.62 -9.66 2.86 -182.96 -0.52 -10.18 16
3 C 0.19 2.71 5.98 -5.19 -0.03 2.68 16
4 C 0.03 0.41 6.97 -13.46 -0.09 0.32 16
5 N -0.47 -6.46 10.54 -11.86 -0.13 -6.58 16
6 C 0.03 0.37 11.35 -19.18 -0.22 0.16 16
7 C -0.28 -3.05 11.37 29.12 0.33 -2.71 16
8 S 0.17 2.36 23.18 -107.50 -2.49 -0.13 16
9 C 0.52 10.10 7.67 -10.98 -0.08 10.02 16
10 O -0.51 -11.72 15.61 5.56 0.09 -11.63 16
11 C -0.07 -1.27 3.91 -29.03 -0.11 -1.39 16
12 C -0.17 -3.97 4.43 -103.91 -0.46 -4.43 16
13 C -0.07 -1.45 9.66 -39.66 -0.38 -1.84 16
14 C -0.24 -5.26 10.05 -39.29 -0.39 -5.66 16
15 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16
16 C -0.24 -6.06 7.26 -38.87 -0.28 -6.34 16
17 C 0.12 2.97 5.13 -106.83 -0.55 2.42 16
18 C -0.51 -13.57 8.80 -37.75 -0.33 -13.90 16
19 H 0.07 1.97 6.60 -52.49 -0.35 1.62 16
20 C 0.05 1.28 5.42 -17.34 -0.09 1.18 16
21 N -0.82 -22.32 13.65 55.55 0.76 -21.56 16
22 Si 1.07 25.80 24.89 -169.99 -4.23 21.57 16
23 H -0.28 -6.35 6.45 56.52 0.36 -5.99 16
24 H -0.26 -6.45 7.01 56.52 0.40 -6.05 16
25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16
28 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16
29 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16
30 H 0.11 1.61 7.42 -51.93 -0.39 1.23 16
31 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16
32 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16
33 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16
34 H 0.09 1.79 6.48 -51.93 -0.34 1.46 16
35 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16
36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16
37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16
38 H 0.10 2.57 4.43 -52.48 -0.23 2.33 16
39 H 0.28 7.41 8.73 -40.82 -0.36 7.05 16
LS Contribution 341.56 15.07 5.15 5.15
Total: -1.00 -31.15 341.56 -8.45 -39.60
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -4.58 Total: 3.75 kcal
Atomic # 6 Polarization: -17.50 SS G_CDS: -2.49 Total: -19.99 kcal
Atomic # 7 Polarization: -38.43 SS G_CDS: 0.11 Total: -38.32 kcal
Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal
Atomic # 14 Polarization: 25.80 SS G_CDS: -4.23 Total: 21.57 kcal
Atomic # 16 Polarization: 2.36 SS G_CDS: -2.49 Total: -0.13 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -31.15 -8.45 -39.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776976256.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.586 kcal
(2) G-P(sol) polarization free energy of solvation -31.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds