Wall clock time and date at job start Tue Mar 31 2020 11:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.50698 * 109.47221 * 270.00659 * 3 2 1 5 5 N 1.29026 * 124.91970 * 89.69629 * 4 3 2 6 6 C 1.31782 * 117.12828 * 179.81124 * 5 4 3 7 7 C 1.33639 * 114.49641 * 0.47270 * 6 5 4 8 8 S 1.70978 * 124.91431 * 269.99555 * 4 3 2 9 9 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 10 10 O 1.21280 * 119.99871 * 179.97438 * 9 2 1 11 11 C 1.50701 * 119.99906 * 359.97438 * 9 2 1 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 2 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 27 27 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 28 28 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 29 29 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 30 30 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 31 31 H 1.07997 * 122.75373 * 180.22303 * 6 5 4 32 32 H 1.08000 * 126.03832 * 179.71611 * 7 6 5 33 33 H 1.08999 * 109.47299 * 60.00523 * 11 9 2 34 34 H 1.08998 * 109.47401 * 299.99992 * 11 9 2 35 35 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 36 36 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 37 37 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 38 38 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 39 39 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 1.6529 2.4415 -2.1189 6 6 2.0274 2.7331 -3.3483 7 6 3.1999 2.2041 -3.7105 8 16 3.8259 1.2853 -2.3435 9 6 2.1388 -1.1673 -0.0005 10 8 3.3516 -1.1674 -0.0010 11 6 1.3852 -2.4724 -0.0005 12 6 2.3645 -3.6178 -0.0005 13 6 2.7394 -4.2063 -1.1869 14 6 3.6348 -5.2644 -1.1892 15 6 4.1679 -5.7378 0.0000 16 6 3.8129 -5.1600 1.1973 17 6 2.9039 -4.0857 1.2118 18 6 2.5314 -3.4845 2.4362 19 1 1.5566 -3.0316 2.5408 20 6 3.4259 -3.4762 3.5123 21 7 2.9912 -3.2352 4.7224 22 14 5.2408 -3.8095 3.2209 23 1 5.5014 -5.2667 3.3373 24 1 5.6169 -3.3463 1.8611 25 1 6.0467 -3.0801 4.2328 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3635 -0.8899 -0.5138 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5137 31 1 1.4334 3.3458 -4.0102 32 1 3.6790 2.3189 -4.6716 33 1 0.7583 -2.5299 -0.8903 34 1 0.7589 -2.5303 0.8897 35 1 2.3307 -3.8453 -2.1192 36 1 3.9196 -5.7234 -2.1245 37 1 4.8651 -6.5625 -0.0136 38 1 4.2297 -5.5300 2.1223 39 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776976256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:42 Heat of formation + Delta-G solvation = 14.235750 kcal Electronic energy + Delta-G solvation = -23840.092900 eV Core-core repulsion = 20452.595833 eV Total energy + Delta-G solvation = -3387.497068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19571 -40.44160 -39.36162 -36.60287 -35.57651 -33.75814 -32.18997 -31.96411 -29.48325 -28.36893 -27.08303 -26.30882 -24.82920 -23.20147 -21.86845 -21.01549 -20.15284 -19.85143 -19.07025 -17.96049 -17.41319 -17.05591 -16.87467 -16.42147 -16.05942 -15.67493 -15.50733 -15.16919 -14.80659 -14.51284 -14.41913 -14.16016 -13.88599 -13.76601 -13.65788 -13.35451 -13.05621 -12.87800 -12.78716 -12.59762 -12.32499 -12.12858 -11.92374 -11.57250 -11.12135 -10.87979 -10.84025 -10.74774 -10.41016 -9.96401 -9.75744 -9.54138 -9.32959 -9.12625 -6.46150 -0.34395 0.40838 0.82668 0.86697 0.92291 1.33670 1.53249 1.70050 1.74902 1.75368 2.17845 2.23776 2.72272 3.13361 3.49044 3.82989 4.03431 4.15353 4.19553 4.29610 4.33936 4.38698 4.47167 4.49150 4.52495 4.55769 4.65555 4.71139 4.86629 4.92785 4.99473 5.20946 5.26613 5.44971 5.53184 5.62691 5.84717 5.91189 6.04678 6.20470 6.33319 6.51111 6.68774 6.75999 6.90644 7.27116 8.09785 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.004494 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.120267 B = 6228.692904 C = 6678.534181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.190 3.810 4 C 0.018 3.982 5 N -0.478 5.478 6 C 0.021 3.979 7 C -0.253 4.253 8 S 0.124 5.876 9 C 0.517 3.483 10 O -0.555 6.555 11 C -0.066 4.066 12 C -0.175 4.175 13 C -0.079 4.079 14 C -0.231 4.231 15 C -0.087 4.087 16 C -0.265 4.265 17 C 0.089 3.911 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.016 3.984 21 N -0.853 5.853 22 Si 1.096 2.904 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.287 1.287 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.206 0.794 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 10.019 -14.623 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.064 3.936 4 C -0.261 4.261 5 N -0.194 5.194 6 C -0.130 4.130 7 C -0.393 4.393 8 S 0.377 5.623 9 C 0.307 3.693 10 O -0.431 6.431 11 C -0.105 4.105 12 C -0.177 4.177 13 C -0.097 4.097 14 C -0.250 4.250 15 C -0.105 4.105 16 C -0.284 4.284 17 C 0.086 3.914 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.197 4.197 21 N -0.478 5.478 22 Si 0.921 3.079 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.215 1.215 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.221 0.779 32 H 0.223 0.777 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.433 9.449 -13.299 16.376 hybrid contribution -2.162 0.763 -0.798 2.428 sum -3.595 10.211 -14.097 17.774 Atomic orbital electron populations 1.22003 0.77021 1.04512 1.02909 1.47983 1.08453 1.04300 1.74459 1.19867 0.99393 0.86436 0.87887 1.27539 0.95182 1.00653 1.02686 1.66315 1.31782 1.14288 1.07041 1.22277 0.95993 1.02566 0.92145 1.27583 1.01679 1.04955 1.05057 1.84874 1.24146 1.47007 1.06280 1.21148 0.87982 0.85834 0.74353 1.90656 1.15634 1.87537 1.49294 1.20301 0.97080 0.89217 1.03938 1.19486 1.05385 0.99878 0.92948 1.20843 0.96866 0.95645 0.96319 1.20851 1.04451 1.02198 0.97459 1.20989 0.98262 0.98682 0.92564 1.21297 1.07897 1.01487 0.97736 1.17753 0.90470 0.90192 0.92975 1.20464 1.02136 1.35895 0.97642 0.92262 1.27803 1.09350 0.91287 0.91250 1.70612 1.19889 1.34978 1.22322 0.83271 0.70739 0.77826 0.76057 1.18536 1.20122 1.21476 0.91599 0.89323 0.89921 0.85647 0.89568 0.77897 0.77678 0.87103 0.89228 0.86191 0.85510 0.85860 0.88483 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.70 10.24 127.77 1.31 3.01 16 2 N -0.62 -18.69 2.86 -851.13 -2.43 -21.12 16 3 C 0.19 5.36 5.98 85.63 0.51 5.87 16 4 C 0.02 0.48 6.97 88.52 0.62 1.10 16 5 N -0.48 -11.99 10.54 -191.45 -2.02 -14.01 16 6 C 0.02 0.41 11.35 83.66 0.95 1.36 16 7 C -0.25 -4.84 11.37 66.78 0.76 -4.08 16 8 S 0.12 3.31 23.18 -56.49 -1.31 2.00 16 9 C 0.52 20.05 7.67 87.66 0.67 20.72 16 10 O -0.55 -26.10 15.61 -3.03 -0.05 -26.15 16 11 C -0.07 -2.47 3.91 29.10 0.11 -2.35 16 12 C -0.18 -7.91 4.43 -19.40 -0.09 -7.99 16 13 C -0.08 -3.19 9.66 22.22 0.21 -2.97 16 14 C -0.23 -9.13 10.05 22.46 0.23 -8.90 16 15 C -0.09 -3.70 10.02 22.22 0.22 -3.48 16 16 C -0.27 -13.08 7.26 22.73 0.16 -12.91 16 17 C 0.09 4.56 5.13 -21.29 -0.11 4.46 16 18 C -0.53 -29.20 8.80 23.46 0.21 -28.99 16 19 H 0.06 3.31 6.60 -2.91 -0.02 3.29 16 20 C 0.02 0.90 5.42 85.26 0.46 1.37 16 21 N -0.85 -48.21 13.65 21.82 0.30 -47.91 16 22 Si 1.10 53.61 24.89 68.60 1.71 55.32 16 23 H -0.26 -11.64 6.45 99.48 0.64 -11.00 16 24 H -0.28 -14.15 7.01 99.48 0.70 -13.45 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 28 H 0.08 1.64 6.44 -2.39 -0.02 1.62 16 29 H 0.13 2.85 8.07 -2.39 -0.02 2.83 16 30 H 0.09 2.76 7.42 -2.39 -0.02 2.74 16 31 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.11 3.28 7.31 -2.39 -0.02 3.26 16 34 H 0.09 3.43 6.48 -2.39 -0.02 3.42 16 35 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.10 4.82 4.43 -2.91 -0.01 4.81 16 39 H 0.28 15.32 8.73 -92.71 -0.81 14.51 16 Total: -1.00 -69.36 341.56 3.40 -65.96 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.96 Total: 19.71 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 6.23 Total: -33.80 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -4.15 Total: -83.04 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.71 Total: 55.32 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.31 Total: 2.00 kcal Total: -69.36 3.40 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776976256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.196 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds