Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47057 * 358.47711 * 3 2 1 5 5 C 1.37096 * 119.99755 * 264.13943 * 4 3 2 6 6 H 1.07998 * 119.99678 * 197.44044 * 5 4 3 7 7 C 1.38946 * 120.00055 * 17.43477 * 5 4 3 8 8 N 1.31408 * 120.00140 * 21.52473 * 7 5 4 9 9 Si 1.86802 * 119.99865 * 201.52348 * 7 5 4 10 10 H 1.48502 * 109.47131 * 60.00517 * 9 7 5 11 11 H 1.48504 * 109.46850 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47293 * 300.00270 * 9 7 5 13 13 C 1.34774 * 120.00173 * 84.14110 * 4 3 2 14 14 O 1.21292 * 119.99874 * 180.02562 * 13 4 3 15 15 C 1.50702 * 120.00089 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.46980 * 180.02562 * 15 13 4 17 17 H 1.09000 * 110.45525 * 52.40738 * 16 15 13 18 18 C 1.51146 * 110.50443 * 175.00046 * 16 15 13 19 19 C 1.37736 * 132.82147 * 298.69092 * 18 16 15 20 20 C 1.38373 * 119.96061 * 179.97438 * 19 18 16 21 21 C 1.38311 * 119.84081 * 359.97438 * 20 19 18 22 22 C 1.38120 * 120.34817 * 359.97438 * 21 20 19 23 23 F 1.35094 * 119.95745 * 180.02562 * 22 21 20 24 24 C 1.38810 * 106.35547 * 118.64749 * 18 16 15 25 25 N 1.39654 * 110.23324 * 359.97438 * 24 18 16 26 26 C 1.34370 * 112.21361 * 0.02562 * 25 24 18 27 27 O 1.21298 * 126.44227 * 179.97438 * 26 25 24 28 28 H 4.40636 * 5.51308 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47130 * 238.47471 * 3 2 1 30 30 H 1.09001 * 109.46862 * 118.47226 * 3 2 1 31 31 H 0.97006 * 120.00133 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.46767 * 60.00095 * 15 13 4 33 33 H 1.09001 * 109.47225 * 300.00351 * 15 13 4 34 34 H 1.08000 * 120.02612 * 359.92937 * 19 18 16 35 35 H 1.08002 * 120.07898 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.82904 * 179.97438 * 21 20 19 37 37 H 0.96998 * 123.89257 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3798 0.0367 5 6 3.4780 -1.9539 1.2335 6 1 4.0910 -2.8429 1.2499 7 6 3.0372 -1.3919 2.4253 8 7 1.9855 -0.6040 2.4308 9 14 3.9395 -1.7563 4.0198 10 1 5.3480 -1.2993 3.9071 11 1 3.2748 -1.0417 5.1391 12 1 3.9127 -3.2179 4.2809 13 6 3.2476 -2.0855 -1.1060 14 8 3.6520 -3.2286 -1.0755 15 6 2.8700 -1.4546 -2.4215 16 6 3.0895 -2.4621 -3.5518 17 1 2.5825 -3.4010 -3.3291 18 6 2.6035 -1.8969 -4.8667 19 6 1.3664 -1.4808 -5.3067 20 6 1.2180 -0.9959 -6.5942 21 6 2.3140 -0.9302 -7.4354 22 6 3.5561 -1.3456 -6.9970 23 9 4.6213 -1.2775 -7.8251 24 6 3.7120 -1.8367 -5.6999 25 7 4.8441 -2.3093 -5.0326 26 6 4.5687 -2.6943 -3.7750 27 8 5.3570 -3.1437 -2.9701 28 1 -1.0497 -0.0004 0.0002 29 1 3.0091 0.5381 0.8759 30 1 3.0091 0.4908 -0.9034 31 1 1.6775 -0.2119 3.2629 32 1 3.4895 -0.5745 -2.5934 33 1 1.8207 -1.1609 -2.3957 34 1 0.5125 -1.5336 -4.6476 35 1 0.2490 -0.6687 -6.9411 36 1 2.1979 -0.5521 -8.4404 37 1 5.7272 -2.3550 -5.4311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935812283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -2.377565 kcal Electronic energy + Delta-G solvation = -25861.581098 eV Core-core repulsion = 21907.150447 eV Total energy + Delta-G solvation = -3954.430651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.04834 -41.53518 -38.62964 -38.14267 -35.62629 -35.18781 -33.16714 -32.03771 -31.18910 -29.89069 -29.24475 -26.72216 -26.06714 -24.11504 -22.83541 -21.77253 -20.82121 -18.91028 -18.29841 -17.85442 -17.38368 -16.56045 -16.44686 -16.15951 -15.98028 -15.78291 -15.33177 -15.08041 -14.53034 -14.40882 -14.06295 -13.70111 -13.30471 -13.17797 -12.80178 -12.65993 -12.41111 -12.20430 -12.12845 -11.74668 -11.69036 -11.40181 -11.16321 -10.93926 -10.92331 -10.50400 -10.27125 -9.73632 -9.36789 -9.22099 -8.99512 -8.87284 -8.35255 -8.13714 -7.80945 -6.29598 -3.80536 0.89560 0.92110 2.63989 2.90600 3.20986 3.27691 3.32048 3.44079 3.69295 3.92406 3.97643 4.02920 4.11395 4.20394 4.37746 4.63501 4.73429 4.97127 5.04865 5.07928 5.15092 5.35132 5.45287 5.58384 5.66121 5.72433 5.87863 5.97679 6.05802 6.08905 6.20480 6.33452 6.46726 6.73665 6.75785 6.86297 7.01682 7.61149 8.08560 8.17851 8.47560 8.78831 9.19071 9.40103 9.95767 10.71682 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.003825 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.473319 B = 7317.828027 C = 8294.316779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.311 4.311 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.865 5.865 9 Si 0.920 3.080 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.448 3.552 14 O -0.558 6.558 15 C -0.110 4.110 16 C -0.061 4.061 17 H 0.134 0.866 18 C -0.107 4.107 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.121 4.121 22 C 0.069 3.931 23 F -0.142 7.142 24 C 0.122 3.878 25 N -0.666 5.666 26 C 0.530 3.470 27 O -0.450 6.450 28 H 0.199 0.801 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 4.379 -17.704 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.113 4.113 3 C 0.107 3.893 4 N -0.162 5.162 5 C -0.438 4.438 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.504 5.504 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.236 3.764 14 O -0.439 6.439 15 C -0.151 4.151 16 C -0.083 4.083 17 H 0.152 0.848 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.136 4.136 21 C -0.141 4.141 22 C 0.046 3.954 23 F -0.121 7.121 24 C 0.023 3.977 25 N -0.312 5.312 26 C 0.316 3.684 27 O -0.318 6.318 28 H 0.216 0.784 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.533 3.594 -16.916 17.478 hybrid contribution 0.609 0.046 0.498 0.788 sum -1.924 3.639 -16.418 16.926 Atomic orbital electron populations 1.24256 0.95337 1.02107 1.06426 1.23210 0.94339 0.98358 0.95401 1.18253 0.84270 0.85521 1.01241 1.43620 1.56556 1.10041 1.05989 1.19616 1.29929 1.12920 0.81355 0.87856 1.25244 0.95206 0.97530 0.99317 1.70071 1.19799 1.32541 1.27971 0.86102 0.79663 0.78787 0.80807 1.19965 1.21115 1.19894 1.19835 0.84760 0.86938 0.84895 1.90610 1.49338 1.17635 1.86356 1.21422 1.03711 0.97440 0.92521 1.20474 0.93794 1.02047 0.91968 0.84814 1.19898 0.92875 1.02960 0.95337 1.20449 0.95849 0.96626 0.95916 1.20914 0.98603 1.00921 0.93150 1.20875 0.90447 1.01393 1.01343 1.17001 0.85005 1.07222 0.86156 1.91480 1.54755 1.94743 1.71100 1.18156 0.88415 0.99028 0.92137 1.43915 1.10170 1.62565 1.14523 1.20528 0.91001 0.76772 0.80108 1.90915 1.54316 1.40415 1.46141 0.78404 0.87240 0.92255 0.92202 0.90139 0.88499 0.84377 0.84330 0.84176 0.75088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.11 -2.39 10.88 -37.12 -0.40 -2.80 16 3 C 0.23 4.99 4.91 -6.83 -0.03 4.96 16 4 N -0.44 -11.08 2.60 -117.94 -0.31 -11.38 16 5 C -0.31 -8.60 9.32 -14.94 -0.14 -8.74 16 6 H 0.10 3.05 7.38 -52.49 -0.39 2.66 16 7 C 0.03 0.80 4.87 -17.47 -0.09 0.72 16 8 N -0.87 -22.56 9.48 55.50 0.53 -22.03 16 9 Si 0.92 20.73 29.60 -169.99 -5.03 15.70 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.45 10.66 7.26 -10.99 -0.08 10.58 16 14 O -0.56 -15.26 13.61 -15.55 -0.21 -15.47 16 15 C -0.11 -1.94 3.82 -27.88 -0.11 -2.04 16 16 C -0.06 -0.98 2.59 -92.37 -0.24 -1.22 16 17 H 0.13 2.24 7.90 -51.93 -0.41 1.83 16 18 C -0.11 -1.34 5.67 -104.38 -0.59 -1.93 16 19 C -0.07 -0.68 10.03 -39.72 -0.40 -1.08 16 20 C -0.12 -0.92 10.06 -39.50 -0.40 -1.31 16 21 C -0.12 -1.03 9.99 -39.60 -0.40 -1.43 16 22 C 0.07 0.75 7.33 -39.13 -0.29 0.46 16 23 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 24 C 0.12 1.52 7.09 -83.59 -0.59 0.93 16 25 N -0.67 -9.16 5.89 -9.64 -0.06 -9.21 16 26 C 0.53 9.35 7.83 -10.83 -0.08 9.26 16 27 O -0.45 -10.04 15.97 -15.56 -0.25 -10.28 16 28 H 0.20 3.13 7.80 -54.11 -0.42 2.70 16 29 H 0.11 2.53 6.44 -51.93 -0.33 2.19 16 30 H 0.06 1.07 6.69 -51.93 -0.35 0.72 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.08 1.31 7.40 -51.93 -0.38 0.92 16 33 H 0.10 1.54 7.50 -51.93 -0.39 1.16 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.41 4.82 8.96 -40.82 -0.37 4.46 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -33.53 329.21 -7.04 -40.57 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.44 Total: 6.93 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.27 Total: 1.79 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.16 Total: -42.63 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.46 Total: -25.76 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.53 -7.04 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.188 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds