Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47057 * 358.47711 * 3 2 1 5 5 C 1.37096 * 119.99755 * 264.13943 * 4 3 2 6 6 H 1.07998 * 119.99678 * 197.44044 * 5 4 3 7 7 C 1.38946 * 120.00055 * 17.43477 * 5 4 3 8 8 N 1.31408 * 120.00140 * 21.52473 * 7 5 4 9 9 Si 1.86802 * 119.99865 * 201.52348 * 7 5 4 10 10 H 1.48502 * 109.47131 * 60.00517 * 9 7 5 11 11 H 1.48504 * 109.46850 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47293 * 300.00270 * 9 7 5 13 13 C 1.34774 * 120.00173 * 84.14110 * 4 3 2 14 14 O 1.21292 * 119.99874 * 180.02562 * 13 4 3 15 15 C 1.50702 * 120.00089 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.46980 * 180.02562 * 15 13 4 17 17 H 1.09000 * 110.45525 * 52.40738 * 16 15 13 18 18 C 1.51146 * 110.50443 * 175.00046 * 16 15 13 19 19 C 1.37736 * 132.82147 * 298.69092 * 18 16 15 20 20 C 1.38373 * 119.96061 * 179.97438 * 19 18 16 21 21 C 1.38311 * 119.84081 * 359.97438 * 20 19 18 22 22 C 1.38120 * 120.34817 * 359.97438 * 21 20 19 23 23 F 1.35094 * 119.95745 * 180.02562 * 22 21 20 24 24 C 1.38810 * 106.35547 * 118.64749 * 18 16 15 25 25 N 1.39654 * 110.23324 * 359.97438 * 24 18 16 26 26 C 1.34370 * 112.21361 * 0.02562 * 25 24 18 27 27 O 1.21298 * 126.44227 * 179.97438 * 26 25 24 28 28 H 4.40636 * 5.51308 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47130 * 238.47471 * 3 2 1 30 30 H 1.09001 * 109.46862 * 118.47226 * 3 2 1 31 31 H 0.97006 * 120.00133 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.46767 * 60.00095 * 15 13 4 33 33 H 1.09001 * 109.47225 * 300.00351 * 15 13 4 34 34 H 1.08000 * 120.02612 * 359.92937 * 19 18 16 35 35 H 1.08002 * 120.07898 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.82904 * 179.97438 * 21 20 19 37 37 H 0.96998 * 123.89257 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3798 0.0367 5 6 3.4780 -1.9539 1.2335 6 1 4.0910 -2.8429 1.2499 7 6 3.0372 -1.3919 2.4253 8 7 1.9855 -0.6040 2.4308 9 14 3.9395 -1.7563 4.0198 10 1 5.3480 -1.2993 3.9071 11 1 3.2748 -1.0417 5.1391 12 1 3.9127 -3.2179 4.2809 13 6 3.2476 -2.0855 -1.1060 14 8 3.6520 -3.2286 -1.0755 15 6 2.8700 -1.4546 -2.4215 16 6 3.0895 -2.4621 -3.5518 17 1 2.5825 -3.4010 -3.3291 18 6 2.6035 -1.8969 -4.8667 19 6 1.3664 -1.4808 -5.3067 20 6 1.2180 -0.9959 -6.5942 21 6 2.3140 -0.9302 -7.4354 22 6 3.5561 -1.3456 -6.9970 23 9 4.6213 -1.2775 -7.8251 24 6 3.7120 -1.8367 -5.6999 25 7 4.8441 -2.3093 -5.0326 26 6 4.5687 -2.6943 -3.7750 27 8 5.3570 -3.1437 -2.9701 28 1 -1.0497 -0.0004 0.0002 29 1 3.0091 0.5381 0.8759 30 1 3.0091 0.4908 -0.9034 31 1 1.6775 -0.2119 3.2629 32 1 3.4895 -0.5745 -2.5934 33 1 1.8207 -1.1609 -2.3957 34 1 0.5125 -1.5336 -4.6476 35 1 0.2490 -0.6687 -6.9411 36 1 2.1979 -0.5521 -8.4404 37 1 5.7272 -2.3550 -5.4311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935812283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = -22.969238 kcal Electronic energy + Delta-G solvation = -25862.474020 eV Core-core repulsion = 21907.150447 eV Total energy + Delta-G solvation = -3955.323573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.89224 -42.66997 -40.34215 -39.35474 -37.05282 -36.74290 -34.53498 -33.80078 -32.95716 -30.85357 -30.21193 -28.37668 -27.57364 -25.87609 -23.68340 -22.71704 -22.18864 -20.54891 -19.62795 -19.31727 -18.54034 -18.19466 -17.80146 -17.40359 -17.20540 -16.76662 -16.53267 -16.38750 -16.07122 -15.84662 -15.68639 -15.09644 -14.57241 -14.23437 -14.10927 -14.03345 -13.95295 -13.64847 -13.45236 -13.25130 -12.96514 -12.80585 -12.75946 -12.42975 -12.22295 -12.12652 -11.92211 -11.21149 -11.06833 -10.98898 -10.58601 -10.26608 -9.76784 -9.75430 -9.09088 -8.29274 -5.87669 0.02077 0.13660 1.37642 1.39093 1.41690 1.51022 1.83478 1.97229 2.18791 2.36447 2.43398 2.62016 2.97708 3.02504 3.10281 3.23974 3.44754 3.81981 3.87242 3.92962 4.00222 4.10783 4.25130 4.37191 4.52390 4.62101 4.72403 4.82166 4.92040 5.00927 5.03399 5.31511 5.44966 5.49257 5.50327 5.52158 5.68016 5.95081 6.09355 6.49702 6.92100 7.20103 7.21889 7.47623 8.06602 8.69174 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.003825 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.473319 B = 7317.828027 C = 8294.316779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.156 4.156 3 C 0.233 3.767 4 N -0.457 5.457 5 C -0.350 4.350 6 H 0.067 0.933 7 C 0.006 3.994 8 N -0.869 5.869 9 Si 0.977 3.023 10 H -0.272 1.272 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.436 3.564 14 O -0.605 6.605 15 C -0.093 4.093 16 C -0.059 4.059 17 H 0.118 0.882 18 C -0.115 4.115 19 C -0.068 4.068 20 C -0.095 4.095 21 C -0.110 4.110 22 C 0.064 3.936 23 F -0.147 7.147 24 C 0.096 3.904 25 N -0.656 5.656 26 C 0.523 3.477 27 O -0.514 6.514 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.173 0.827 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 6.568 -19.865 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.158 4.158 3 C 0.111 3.889 4 N -0.176 5.176 5 C -0.477 4.477 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.506 5.506 9 Si 0.801 3.199 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.226 3.774 14 O -0.490 6.490 15 C -0.133 4.133 16 C -0.081 4.081 17 H 0.136 0.864 18 C -0.118 4.118 19 C -0.086 4.086 20 C -0.113 4.113 21 C -0.129 4.129 22 C 0.042 3.958 23 F -0.126 7.126 24 C -0.002 4.002 25 N -0.301 5.301 26 C 0.311 3.689 27 O -0.387 6.387 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.175 0.825 35 H 0.198 0.802 36 H 0.190 0.810 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.383 5.846 -19.140 20.724 hybrid contribution 1.358 -0.600 1.041 1.813 sum -4.025 5.245 -18.099 19.269 Atomic orbital electron populations 1.25128 0.96221 0.99907 1.04341 1.23329 0.94762 1.00330 0.97333 1.18262 0.85076 0.83631 1.01954 1.43830 1.56803 1.11407 1.05590 1.19426 1.31468 1.13265 0.83580 0.91489 1.25826 0.95493 0.97111 1.01273 1.70149 1.19682 1.32113 1.28705 0.85263 0.78766 0.78106 0.77756 1.19756 1.19366 1.20757 1.20882 0.83325 0.86621 0.86611 1.90574 1.51025 1.19966 1.87388 1.21292 1.05001 0.97687 0.89307 1.20306 0.92839 1.01337 0.93573 0.86397 1.19692 0.94265 1.04651 0.93206 1.20784 0.94971 0.95679 0.97194 1.21393 1.00031 0.98248 0.91631 1.21335 0.89182 0.99530 1.02808 1.17272 0.85903 1.07316 0.85352 1.91473 1.55282 1.94788 1.71028 1.18341 0.87637 1.00978 0.93227 1.43677 1.11251 1.61663 1.13466 1.20815 0.91455 0.76023 0.80638 1.90871 1.55936 1.43588 1.48317 0.74810 0.89324 0.88849 0.91852 0.88628 0.86204 0.82547 0.80217 0.80966 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.67 19.25 74.32 1.43 -7.24 16 2 C -0.16 -6.50 10.88 31.13 0.34 -6.16 16 3 C 0.23 10.14 4.91 84.57 0.42 10.56 16 4 N -0.46 -23.72 2.60 -645.43 -1.68 -25.40 16 5 C -0.35 -20.32 9.32 84.04 0.78 -19.54 16 6 H 0.07 4.28 7.38 -2.91 -0.02 4.26 16 7 C 0.01 0.34 4.87 84.93 0.41 0.76 16 8 N -0.87 -45.28 9.48 21.66 0.21 -45.07 16 9 Si 0.98 43.34 29.60 68.60 2.03 45.38 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.44 21.70 7.26 87.66 0.64 22.33 16 14 O -0.60 -35.48 13.61 17.11 0.23 -35.24 16 15 C -0.09 -3.26 3.82 29.85 0.11 -3.15 16 16 C -0.06 -1.92 2.59 -11.93 -0.03 -1.95 16 17 H 0.12 4.17 7.90 -2.39 -0.02 4.15 16 18 C -0.12 -2.68 5.67 -19.70 -0.11 -2.79 16 19 C -0.07 -1.05 10.03 22.18 0.22 -0.83 16 20 C -0.09 -0.94 10.06 22.32 0.22 -0.72 16 21 C -0.11 -1.32 9.99 22.26 0.22 -1.10 16 22 C 0.06 1.21 7.33 22.56 0.17 1.38 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.25 16 24 C 0.10 2.28 7.09 38.35 0.27 2.55 16 25 N -0.66 -18.53 5.89 -303.04 -1.78 -20.31 16 26 C 0.52 19.55 7.83 87.94 0.69 20.24 16 27 O -0.51 -24.87 15.97 17.09 0.27 -24.60 16 28 H 0.24 6.39 7.80 -4.43 -0.03 6.35 16 29 H 0.09 4.17 6.44 -2.39 -0.02 4.15 16 30 H 0.09 3.29 6.69 -2.39 -0.02 3.27 16 31 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 32 H 0.10 3.05 7.40 -2.39 -0.02 3.04 16 33 H 0.12 3.63 7.50 -2.39 -0.02 3.61 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 36 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.42 10.26 8.96 -92.71 -0.83 9.43 16 Total: -1.00 -78.90 329.21 6.15 -72.75 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.31 Total: 20.39 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.78 Total: 14.35 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -3.26 Total: -90.78 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: 0.51 Total: -59.84 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.90 6.15 -72.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.784 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds