Wall clock time and date at job start Tue Mar 31 2020 12:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46821 * 235.40452 * 3 2 1 5 5 N 1.46502 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00414 * 274.91678 * 5 4 3 7 7 C 1.50706 * 109.46911 * 263.65427 * 6 5 4 8 8 H 1.07997 * 119.99939 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99439 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00890 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47507 * 119.99784 * 11 9 7 14 14 H 1.48500 * 109.47153 * 239.99516 * 11 9 7 15 15 C 1.34781 * 119.99645 * 94.91789 * 5 4 3 16 16 O 1.21608 * 120.00199 * 4.33567 * 15 5 4 17 17 C 1.47412 * 119.99773 * 184.33732 * 15 5 4 18 18 N 1.31550 * 126.82321 * 354.34100 * 17 15 5 19 19 N 1.28376 * 111.95373 * 179.97438 * 18 17 15 20 20 H 0.97005 * 124.36729 * 180.02562 * 19 18 17 21 21 C 1.37062 * 111.26000 * 359.97438 * 19 18 17 22 22 C 1.39156 * 134.60285 * 179.97438 * 21 19 18 23 23 C 1.37638 * 119.86280 * 179.97438 * 22 21 19 24 24 C 1.38909 * 120.77924 * 0.02562 * 23 22 21 25 25 C 1.37902 * 120.35655 * 359.97438 * 24 23 22 26 26 F 1.35096 * 120.25233 * 179.97438 * 25 24 23 27 27 C 1.39392 * 119.49266 * 0.02562 * 25 24 23 28 28 H 1.08993 * 109.47259 * 115.40326 * 3 2 1 29 29 H 1.09004 * 109.46904 * 355.40446 * 3 2 1 30 30 H 1.09000 * 109.47811 * 60.00342 * 4 3 2 31 31 H 1.09004 * 109.47376 * 299.99705 * 4 3 2 32 32 H 1.09004 * 109.46716 * 23.64843 * 6 5 4 33 33 H 1.08998 * 109.47376 * 143.65431 * 6 5 4 34 34 H 0.96992 * 120.00862 * 179.97438 * 10 9 7 35 35 H 1.08007 * 120.06591 * 359.97438 * 22 21 19 36 36 H 1.07995 * 119.61241 * 179.97438 * 23 22 21 37 37 H 1.07995 * 119.81831 * 179.71795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8199 1.1874 5 7 4.5826 0.8201 1.1878 6 6 5.3151 -0.2820 1.8163 7 6 5.7019 0.1078 3.2198 8 1 5.4296 1.0794 3.6048 9 6 6.4042 -0.7756 4.0117 10 7 6.7362 -1.9586 3.5428 11 14 6.8843 -0.2923 5.7511 12 1 6.3962 1.0810 6.0358 13 1 6.2760 -1.2440 6.7152 14 1 8.3628 -0.3294 5.8850 15 6 5.2565 1.8342 0.6099 16 8 4.6510 2.7872 0.1581 17 6 6.7274 1.7882 0.5255 18 7 7.5197 0.8821 1.0564 19 7 8.7561 1.1188 0.8047 20 1 9.4925 0.5655 1.1088 21 6 8.9011 2.2537 0.0500 22 6 9.9877 2.9399 -0.4839 23 6 9.7811 4.0852 -1.2187 24 6 8.4970 4.5686 -1.4357 25 6 7.4055 3.9050 -0.9162 26 9 6.1576 4.3772 -1.1281 27 6 7.5996 2.7438 -0.1700 28 1 2.9712 0.4416 -0.9282 29 1 2.9718 -1.0236 0.0823 30 1 2.7545 0.3789 2.1158 31 1 2.7538 1.8441 1.1051 32 1 4.6816 -1.1685 1.8470 33 1 6.2138 -0.4973 1.2383 34 1 7.2306 -2.5800 4.0998 35 1 10.9911 2.5745 -0.3219 36 1 10.6273 4.6148 -1.6308 37 1 8.3531 5.4712 -2.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155283381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:58 Heat of formation + Delta-G solvation = 47.673577 kcal Electronic energy + Delta-G solvation = -25977.822215 eV Core-core repulsion = 22057.854696 eV Total energy + Delta-G solvation = -3919.967520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.45296 -42.15198 -39.01392 -37.35387 -36.62134 -35.17048 -32.89096 -32.16542 -30.97831 -30.16230 -29.17713 -27.17470 -24.92045 -23.41946 -23.03208 -22.53388 -21.78101 -18.84178 -17.91202 -17.57711 -17.29530 -16.51908 -16.11018 -16.00288 -15.66487 -15.33701 -15.27217 -14.76846 -14.72452 -14.51371 -14.12889 -14.07447 -13.40281 -12.98213 -12.84569 -12.44087 -12.29666 -12.12200 -11.89903 -11.74386 -11.68323 -11.59124 -11.44694 -10.97931 -10.94202 -10.63568 -10.25127 -9.91050 -9.75296 -9.71540 -9.43216 -8.76613 -8.48980 -7.92147 -7.75070 -6.14158 -4.16298 0.90846 1.33487 2.24194 2.87005 2.97158 2.97590 3.19702 3.29410 3.34473 3.54452 3.60488 3.96381 4.30787 4.35191 4.40779 4.57988 4.75697 4.90118 5.02131 5.19621 5.21530 5.29789 5.36260 5.52815 5.68087 5.69932 5.99867 6.07242 6.12673 6.25433 6.29175 6.32677 6.64770 6.86493 7.14537 7.35369 7.56007 7.73454 7.79000 8.10274 8.12052 8.25554 8.79991 8.91604 9.47553 10.93487 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.008800 B = 0.006272 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.155848 B = 4463.333730 C = 7030.619080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.125 3.875 5 N -0.583 5.583 6 C 0.225 3.775 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.890 5.890 11 Si 0.886 3.114 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.600 3.400 16 O -0.548 6.548 17 C 0.013 3.987 18 N -0.128 5.128 19 N -0.420 5.420 20 H 0.448 0.552 21 C 0.088 3.912 22 C -0.136 4.136 23 C -0.065 4.065 24 C -0.191 4.191 25 C 0.177 3.823 26 F -0.113 7.113 27 C -0.152 4.152 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.261 0.739 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 6.259 -9.094 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.314 5.314 6 C 0.106 3.894 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.714 3.286 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.212 1.212 15 C 0.386 3.614 16 O -0.425 6.425 17 C -0.158 4.158 18 N 0.044 4.956 19 N -0.138 5.138 20 H 0.293 0.707 21 C -0.026 4.026 22 C -0.158 4.158 23 C -0.086 4.086 24 C -0.212 4.212 25 C 0.155 3.845 26 F -0.091 7.091 27 C -0.161 4.161 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.345 5.603 -8.623 12.084 hybrid contribution 1.196 0.480 0.937 1.593 sum 7.541 6.083 -7.686 12.367 Atomic orbital electron populations 1.81177 1.13067 1.09455 1.09085 1.29087 0.95092 0.92610 0.92798 1.19785 0.81337 1.04760 1.02844 1.21172 0.81073 1.01066 0.96730 1.48072 1.05273 1.23872 1.54148 1.19935 0.92760 0.83258 0.93458 1.21370 1.35250 1.01337 0.97459 0.92544 1.24774 0.95664 0.94839 0.97923 1.69919 1.39534 1.06817 1.36647 0.86630 0.78134 0.78722 0.85075 1.19869 1.20964 1.21171 1.16709 0.83778 0.82639 0.78275 1.90788 1.68256 1.33399 1.50030 1.22683 0.94563 0.94613 1.03941 1.73994 0.88886 1.20306 1.12411 1.43664 1.06916 1.20930 1.42292 0.70712 1.19068 0.94836 0.90975 0.97736 1.20001 0.96466 0.97005 1.02311 1.20657 0.96298 0.94816 0.96835 1.20948 0.91500 1.02752 1.05963 1.16935 0.80389 0.91356 0.95783 1.91613 1.38166 1.87074 1.92274 1.19434 0.92989 0.98246 1.05399 0.87317 0.86841 0.89255 0.89406 0.94535 0.91277 0.92940 0.85128 0.84621 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.53 18.54 42.15 0.78 -6.75 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.05 -0.59 6.02 -29.52 -0.18 -0.77 16 4 C 0.12 2.00 5.42 -4.04 -0.02 1.98 16 5 N -0.58 -11.27 2.47 -176.33 -0.44 -11.70 16 6 C 0.23 4.92 4.79 -5.19 -0.02 4.89 16 7 C -0.52 -12.69 8.50 -34.44 -0.29 -12.98 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -23.03 13.29 55.43 0.74 -22.30 16 11 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.60 12.28 7.61 -12.52 -0.10 12.19 16 16 O -0.55 -11.83 14.41 5.27 0.08 -11.75 16 17 C 0.01 0.25 7.00 -80.76 -0.56 -0.32 16 18 N -0.13 -2.45 8.00 34.46 0.28 -2.17 16 19 N -0.42 -6.36 6.85 32.33 0.22 -6.14 16 20 H 0.45 5.30 8.96 -190.49 -1.71 3.60 16 21 C 0.09 1.26 7.37 -84.22 -0.62 0.64 16 22 C -0.14 -1.45 10.07 -39.46 -0.40 -1.85 16 23 C -0.07 -0.64 10.00 -39.55 -0.40 -1.03 16 24 C -0.19 -2.27 10.01 -39.46 -0.40 -2.66 16 25 C 0.18 2.82 7.33 -39.28 -0.29 2.53 16 26 F -0.11 -2.03 15.20 2.25 0.03 -2.00 16 27 C -0.15 -2.64 6.34 -105.00 -0.67 -3.30 16 28 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.09 1.44 7.23 -51.93 -0.38 1.06 16 32 H 0.04 0.81 8.02 -51.93 -0.42 0.40 16 33 H 0.07 1.57 5.32 -51.93 -0.28 1.30 16 34 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -31.09 335.19 -7.50 -38.59 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.86 Total: 0.24 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -4.36 Total: 3.86 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 1.58 Total: -49.06 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.03 Total: -2.00 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.09 -7.50 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155283381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.263 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds