Wall clock time and date at job start Tue Mar 31 2020 12:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46821 * 235.40452 * 3 2 1 5 5 N 1.46502 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00414 * 274.91678 * 5 4 3 7 7 C 1.50706 * 109.46911 * 263.65427 * 6 5 4 8 8 H 1.07997 * 119.99939 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99439 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00890 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47507 * 119.99784 * 11 9 7 14 14 H 1.48500 * 109.47153 * 239.99516 * 11 9 7 15 15 C 1.34781 * 119.99645 * 94.91789 * 5 4 3 16 16 O 1.21608 * 120.00199 * 4.33567 * 15 5 4 17 17 C 1.47412 * 119.99773 * 184.33732 * 15 5 4 18 18 N 1.31550 * 126.82321 * 354.34100 * 17 15 5 19 19 N 1.28376 * 111.95373 * 179.97438 * 18 17 15 20 20 H 0.97005 * 124.36729 * 180.02562 * 19 18 17 21 21 C 1.37062 * 111.26000 * 359.97438 * 19 18 17 22 22 C 1.39156 * 134.60285 * 179.97438 * 21 19 18 23 23 C 1.37638 * 119.86280 * 179.97438 * 22 21 19 24 24 C 1.38909 * 120.77924 * 0.02562 * 23 22 21 25 25 C 1.37902 * 120.35655 * 359.97438 * 24 23 22 26 26 F 1.35096 * 120.25233 * 179.97438 * 25 24 23 27 27 C 1.39392 * 119.49266 * 0.02562 * 25 24 23 28 28 H 1.08993 * 109.47259 * 115.40326 * 3 2 1 29 29 H 1.09004 * 109.46904 * 355.40446 * 3 2 1 30 30 H 1.09000 * 109.47811 * 60.00342 * 4 3 2 31 31 H 1.09004 * 109.47376 * 299.99705 * 4 3 2 32 32 H 1.09004 * 109.46716 * 23.64843 * 6 5 4 33 33 H 1.08998 * 109.47376 * 143.65431 * 6 5 4 34 34 H 0.96992 * 120.00862 * 179.97438 * 10 9 7 35 35 H 1.08007 * 120.06591 * 359.97438 * 22 21 19 36 36 H 1.07995 * 119.61241 * 179.97438 * 23 22 21 37 37 H 1.07995 * 119.81831 * 179.71795 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8199 1.1874 5 7 4.5826 0.8201 1.1878 6 6 5.3151 -0.2820 1.8163 7 6 5.7019 0.1078 3.2198 8 1 5.4296 1.0794 3.6048 9 6 6.4042 -0.7756 4.0117 10 7 6.7362 -1.9586 3.5428 11 14 6.8843 -0.2923 5.7511 12 1 6.3962 1.0810 6.0358 13 1 6.2760 -1.2440 6.7152 14 1 8.3628 -0.3294 5.8850 15 6 5.2565 1.8342 0.6099 16 8 4.6510 2.7872 0.1581 17 6 6.7274 1.7882 0.5255 18 7 7.5197 0.8821 1.0564 19 7 8.7561 1.1188 0.8047 20 1 9.4925 0.5655 1.1088 21 6 8.9011 2.2537 0.0500 22 6 9.9877 2.9399 -0.4839 23 6 9.7811 4.0852 -1.2187 24 6 8.4970 4.5686 -1.4357 25 6 7.4055 3.9050 -0.9162 26 9 6.1576 4.3772 -1.1281 27 6 7.5996 2.7438 -0.1700 28 1 2.9712 0.4416 -0.9282 29 1 2.9718 -1.0236 0.0823 30 1 2.7545 0.3789 2.1158 31 1 2.7538 1.8441 1.1051 32 1 4.6816 -1.1685 1.8470 33 1 6.2138 -0.4973 1.2383 34 1 7.2306 -2.5800 4.0998 35 1 10.9911 2.5745 -0.3219 36 1 10.6273 4.6148 -1.6308 37 1 8.3531 5.4712 -2.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155283381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:57 Heat of formation + Delta-G solvation = 29.167759 kcal Electronic energy + Delta-G solvation = -25978.624688 eV Core-core repulsion = 22057.854696 eV Total energy + Delta-G solvation = -3920.769992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.64824 -43.35886 -40.52673 -38.37508 -37.91998 -36.72577 -34.64173 -33.50808 -32.27620 -31.24314 -30.26883 -28.95997 -26.26941 -25.04426 -24.27112 -23.63114 -23.06862 -20.13725 -19.25577 -18.86779 -18.56557 -18.24467 -17.44550 -17.08419 -16.95884 -16.75684 -16.39017 -16.27072 -16.04950 -15.88925 -15.50752 -15.21086 -14.78587 -14.34853 -14.16213 -14.00942 -13.63055 -13.60305 -13.35135 -12.97407 -12.78886 -12.71180 -12.68543 -12.61799 -12.51539 -12.16683 -11.81103 -11.63098 -11.35093 -11.03052 -10.95400 -10.40892 -9.82067 -9.50034 -8.88421 -8.06935 -6.13367 -0.18549 0.31999 0.91057 1.38030 1.44192 1.51962 1.63209 1.77850 1.84833 2.22913 2.36636 2.49267 2.69370 3.11972 3.25812 3.27845 3.45869 3.60419 3.82136 4.02766 4.09879 4.13567 4.35273 4.40739 4.54239 4.73246 4.85751 4.98493 5.01046 5.07251 5.17843 5.23057 5.39437 5.50568 5.79572 5.88279 5.91793 6.21190 6.26133 6.50879 6.54024 6.83705 7.02604 7.31294 7.53038 8.99563 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.008800 B = 0.006272 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.155848 B = 4463.333730 C = 7030.619080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.240 3.760 7 C -0.517 4.517 8 H 0.035 0.965 9 C 0.038 3.962 10 N -0.910 5.910 11 Si 0.933 3.067 12 H -0.284 1.284 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.594 3.406 16 O -0.568 6.568 17 C -0.025 4.025 18 N -0.155 5.155 19 N -0.409 5.409 20 H 0.460 0.540 21 C 0.082 3.918 22 C -0.120 4.120 23 C -0.052 4.052 24 C -0.168 4.168 25 C 0.130 3.870 26 F -0.138 7.138 27 C -0.181 4.181 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.263 0.737 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 7.014 -9.978 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.004 4.004 5 N -0.313 5.313 6 C 0.119 3.881 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.162 4.162 10 N -0.550 5.550 11 Si 0.761 3.239 12 H -0.209 1.209 13 H -0.207 1.207 14 H -0.204 1.204 15 C 0.381 3.619 16 O -0.447 6.447 17 C -0.194 4.194 18 N 0.015 4.985 19 N -0.130 5.130 20 H 0.307 0.693 21 C -0.031 4.031 22 C -0.141 4.141 23 C -0.072 4.072 24 C -0.188 4.188 25 C 0.108 3.892 26 F -0.116 7.116 27 C -0.189 4.189 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.191 0.809 36 H 0.205 0.795 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.285 6.354 -9.507 14.730 hybrid contribution 0.448 0.352 1.156 1.289 sum 9.733 6.705 -8.351 14.472 Atomic orbital electron populations 1.81201 1.14167 1.10828 1.10329 1.29138 0.94979 0.91363 0.91603 1.19681 0.80248 1.05259 1.01904 1.21271 0.79533 1.01376 0.98174 1.48008 1.06320 1.23152 1.53838 1.19616 0.92727 0.83531 0.92198 1.21430 1.35112 1.00271 0.98820 0.94681 1.25224 0.95805 0.94915 1.00292 1.69973 1.40169 1.07313 1.37519 0.85908 0.78090 0.77743 0.82188 1.20913 1.20719 1.20436 1.16978 0.84591 0.82384 0.77945 1.90753 1.68930 1.33985 1.51047 1.22667 0.94320 0.96401 1.06027 1.73802 0.90448 1.21028 1.13211 1.43608 1.06132 1.21386 1.41885 0.69252 1.19420 0.94973 0.90711 0.98015 1.20604 0.97094 0.96221 1.00181 1.21286 0.96705 0.94078 0.95144 1.21428 0.91132 1.02530 1.03751 1.17425 0.80772 0.92536 0.98467 1.91540 1.39876 1.87409 1.92783 1.19717 0.93834 0.98994 1.06387 0.86115 0.85041 0.89228 0.90034 0.94936 0.91799 0.92780 0.80946 0.79529 0.81835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.29 18.54 20.01 0.37 -15.92 16 2 C 0.25 7.03 15.43 89.44 1.38 8.41 16 3 C -0.03 -0.77 6.02 28.79 0.17 -0.59 16 4 C 0.12 3.97 5.42 86.38 0.47 4.44 16 5 N -0.58 -23.31 2.47 -830.04 -2.05 -25.36 16 6 C 0.24 10.71 4.79 85.64 0.41 11.12 16 7 C -0.52 -26.02 8.50 25.60 0.22 -25.80 16 8 H 0.03 1.88 7.81 -2.91 -0.02 1.86 16 9 C 0.04 1.91 5.46 84.65 0.46 2.37 16 10 N -0.91 -47.05 13.29 21.45 0.28 -46.77 16 11 Si 0.93 41.28 29.54 68.60 2.03 43.31 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 15 C 0.59 25.43 7.61 86.66 0.66 26.09 16 16 O -0.57 -25.77 14.41 -4.06 -0.06 -25.83 16 17 C -0.02 -1.01 7.00 43.87 0.31 -0.70 16 18 N -0.15 -6.06 8.00 -44.88 -0.36 -6.42 16 19 N -0.41 -12.15 6.85 -51.61 -0.35 -12.50 16 20 H 0.46 10.38 8.96 -220.03 -1.97 8.40 16 21 C 0.08 2.23 7.37 39.17 0.29 2.52 16 22 C -0.12 -2.02 10.07 22.35 0.23 -1.80 16 23 C -0.05 -0.74 10.00 22.29 0.22 -0.51 16 24 C -0.17 -3.46 10.01 22.35 0.22 -3.24 16 25 C 0.13 4.10 7.33 22.47 0.16 4.26 16 26 F -0.14 -5.14 15.20 44.97 0.68 -4.45 16 27 C -0.18 -6.32 6.34 -20.11 -0.13 -6.45 16 28 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.09 2.90 8.11 -2.39 -0.02 2.88 16 31 H 0.08 2.78 7.23 -2.39 -0.02 2.76 16 32 H 0.03 1.47 8.02 -2.38 -0.02 1.45 16 33 H 0.06 2.99 5.32 -2.39 -0.01 2.97 16 34 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -70.47 335.19 4.79 -65.68 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -0.82 Total: 8.13 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 5.08 Total: 20.12 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -2.11 Total: -106.96 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.68 Total: -4.45 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.47 4.79 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155283381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.847 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds