Wall clock time and date at job start Tue Mar 31 2020 12:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46956 * 209.12609 * 3 2 1 5 5 N 1.46499 * 109.47361 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99818 * 274.86276 * 5 4 3 7 7 C 1.50699 * 109.47083 * 269.99575 * 6 5 4 8 8 H 1.07998 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00248 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99498 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00174 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47408 * 89.99956 * 11 9 7 13 13 H 1.48500 * 109.47095 * 209.99821 * 11 9 7 14 14 H 1.48495 * 109.47183 * 329.99651 * 11 9 7 15 15 C 1.34780 * 120.00086 * 94.85982 * 5 4 3 16 16 O 1.21719 * 119.99837 * 185.66210 * 15 5 4 17 17 C 1.46570 * 120.00194 * 5.65854 * 15 5 4 18 18 C 1.40536 * 126.57972 * 54.21510 * 17 15 5 19 19 N 1.30749 * 108.73883 * 180.02562 * 18 17 15 20 20 N 1.40022 * 109.60111 * 359.97438 * 19 18 17 21 21 C 1.36296 * 131.99982 * 179.97438 * 20 19 18 22 22 C 1.35168 * 120.74637 * 180.02562 * 21 20 19 23 23 C 1.40153 * 120.34596 * 359.77443 * 22 21 20 24 24 C 1.36628 * 119.38344 * 0.50309 * 23 22 21 25 25 F 1.35098 * 120.39247 * 179.75469 * 24 23 22 26 26 C 1.36530 * 107.90416 * 0.02562 * 20 19 18 27 27 H 1.09004 * 109.46977 * 89.12605 * 3 2 1 28 28 H 1.08995 * 109.47479 * 329.12407 * 3 2 1 29 29 H 1.08994 * 109.47571 * 59.99694 * 4 3 2 30 30 H 1.09011 * 109.47190 * 300.00103 * 4 3 2 31 31 H 1.08994 * 109.47148 * 29.99604 * 6 5 4 32 32 H 1.09001 * 109.47043 * 149.99956 * 6 5 4 33 33 H 0.96999 * 119.99729 * 179.97438 * 10 9 7 34 34 H 1.08004 * 125.62808 * 0.05580 * 18 17 15 35 35 H 1.07997 * 119.62818 * 0.03436 * 21 20 19 36 36 H 1.08001 * 119.82523 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.31120 * 180.25576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2610 0.7021 5 7 4.5824 1.2620 0.7016 6 6 5.3157 0.5531 1.7533 7 6 5.5667 1.4880 2.9083 8 1 5.2147 2.5081 2.8636 9 6 6.2456 1.0412 4.0220 10 7 6.6737 -0.2012 4.0765 11 14 6.5560 2.1998 5.4539 12 1 5.4266 2.1137 6.4143 13 1 7.8171 1.8154 6.1373 14 1 6.6711 3.5914 4.9487 15 6 5.2555 1.9151 -0.2663 16 8 6.4683 1.8312 -0.3270 17 6 4.5272 2.7263 -1.2460 18 6 3.6189 3.7617 -0.9664 19 7 3.1747 4.2472 -2.0962 20 7 3.7637 3.5621 -3.1659 21 6 3.6300 3.6913 -4.5161 22 6 4.3220 2.8923 -5.3586 23 6 5.1945 1.9183 -4.8544 24 6 5.3317 1.7765 -3.5024 25 9 6.1633 0.8409 -2.9942 26 6 4.6030 2.6178 -2.6483 27 1 2.9713 -0.0149 -1.0276 28 1 2.9718 -0.8811 0.5273 29 1 2.7541 1.2766 1.7296 30 1 2.7536 2.1429 0.1747 31 1 4.7273 -0.2980 2.0960 32 1 6.2682 0.2007 1.3576 33 1 7.1516 -0.5155 4.8599 34 1 3.3352 4.1007 0.0190 35 1 2.9637 4.4405 -4.9173 36 1 4.2050 3.0079 -6.4260 37 1 5.7503 1.2830 -5.5281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156915468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:28 Heat of formation + Delta-G solvation = 64.762920 kcal Electronic energy + Delta-G solvation = -25967.637527 eV Core-core repulsion = 22048.411057 eV Total energy + Delta-G solvation = -3919.226470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.98112 -42.27098 -39.02642 -37.29324 -36.77684 -35.14522 -32.99670 -32.57070 -31.11132 -30.78263 -29.22511 -27.10151 -24.24704 -24.01165 -23.91388 -22.69446 -21.68828 -19.13777 -18.06113 -17.60829 -17.40238 -16.67052 -16.52962 -16.33505 -16.21365 -15.62290 -15.48245 -14.96774 -14.68233 -14.30442 -14.12355 -14.00720 -13.74905 -13.50546 -12.92348 -12.72211 -12.43935 -12.35038 -12.21255 -12.02302 -11.90660 -11.64571 -11.25956 -11.16812 -10.94597 -10.82428 -10.61785 -10.31818 -10.16836 -9.72294 -9.68094 -9.12471 -8.44972 -7.87768 -7.65303 -6.06334 -4.11090 0.30442 0.69070 1.86888 2.26951 2.77011 2.86407 2.86839 3.30329 3.37585 3.40858 3.43572 3.70569 3.77859 3.97963 4.23782 4.32019 4.42338 4.45548 4.59284 5.07739 5.09671 5.16729 5.24475 5.26609 5.30995 5.38084 5.53164 5.55947 5.64158 5.88892 6.09853 6.11738 6.16716 6.48903 6.99522 7.23486 7.41139 7.47247 7.62411 7.89984 8.19572 8.29135 8.85933 9.02002 9.54396 11.01703 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.004476 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.947685 B = 6254.180396 C = 7027.212974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.219 3.781 3 C -0.048 4.048 4 C 0.117 3.883 5 N -0.589 5.589 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.586 3.414 16 O -0.522 6.522 17 C -0.261 4.261 18 C 0.113 3.887 19 N -0.305 5.305 20 N -0.257 5.257 21 C 0.100 3.900 22 C -0.141 4.141 23 C -0.125 4.125 24 C 0.122 3.878 25 F -0.102 7.102 26 C 0.101 3.899 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.205 0.795 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 4.541 -18.785 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.372 3.628 16 O -0.398 6.398 17 C -0.276 4.276 18 C -0.066 4.066 19 N -0.126 5.126 20 N -0.022 5.022 21 C -0.026 4.026 22 C -0.162 4.162 23 C -0.149 4.149 24 C 0.100 3.900 25 F -0.080 7.080 26 C -0.020 4.020 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.222 0.778 35 H 0.192 0.808 36 H 0.182 0.818 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.235 5.256 -19.061 21.419 hybrid contribution 1.266 -0.114 1.331 1.841 sum -6.969 5.142 -17.729 19.732 Atomic orbital electron populations 1.81186 1.13000 1.08969 1.09302 1.29122 0.95115 0.92928 0.92751 1.19845 0.81278 1.03363 1.04493 1.21371 0.82342 0.95275 1.02008 1.48057 1.04797 1.51886 1.27292 1.19379 0.92755 0.91677 0.83544 1.21426 1.36717 0.97936 1.00736 0.92284 1.24907 0.95292 0.95213 0.98499 1.69924 1.38178 1.15295 1.29758 0.86524 0.77690 0.81196 0.82187 1.20656 1.21142 1.19867 1.16849 0.86532 0.79336 0.80111 1.90821 1.13316 1.62477 1.73165 1.20204 1.09568 1.07033 0.90812 1.24122 0.92159 0.92635 0.97684 1.77617 1.22903 1.19907 0.92208 1.45887 1.27809 1.22621 1.05934 1.21580 1.01270 1.01379 0.78322 1.20633 0.98299 0.96545 1.00758 1.21266 1.00327 1.00238 0.93091 1.16587 0.92784 0.90101 0.90507 1.91665 1.67825 1.60900 1.87659 1.19098 0.95951 0.93682 0.93237 0.87956 0.86391 0.88830 0.90580 0.94582 0.93268 0.92682 0.77837 0.80752 0.81808 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.01 18.54 42.15 0.78 -6.23 16 2 C 0.22 2.93 15.43 -20.76 -0.32 2.61 16 3 C -0.05 -0.59 6.03 -29.52 -0.18 -0.77 16 4 C 0.12 1.68 5.30 -4.04 -0.02 1.66 16 5 N -0.59 -11.30 2.46 -176.64 -0.43 -11.73 16 6 C 0.24 5.86 5.23 -5.19 -0.03 5.84 16 7 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.59 11.79 7.13 -12.90 -0.09 11.69 16 16 O -0.52 -12.85 16.11 5.17 0.08 -12.77 16 17 C -0.26 -4.26 5.06 -104.68 -0.53 -4.79 16 18 C 0.11 1.57 9.81 -17.15 -0.17 1.40 16 19 N -0.30 -4.13 12.58 30.75 0.39 -3.74 16 20 N -0.26 -3.18 3.86 -10.50 -0.04 -3.22 16 21 C 0.10 0.80 11.17 -16.66 -0.19 0.61 16 22 C -0.14 -0.87 9.98 -39.96 -0.40 -1.27 16 23 C -0.13 -1.07 10.07 -39.44 -0.40 -1.46 16 24 C 0.12 1.59 7.33 -39.39 -0.29 1.30 16 25 F -0.10 -1.62 16.34 2.25 0.04 -1.59 16 26 C 0.10 1.47 6.80 -84.01 -0.57 0.90 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.08 0.98 4.66 -51.92 -0.24 0.74 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.21 2.35 7.79 -52.48 -0.41 1.94 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.16 0.36 8.06 -52.49 -0.42 -0.07 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -35.25 340.74 -5.47 -40.71 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.53 Total: -2.95 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -3.60 Total: 4.98 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.43 Total: -49.66 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.25 -5.47 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156915468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.476 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds