Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46956 * 209.12609 * 3 2 1 5 5 N 1.46499 * 109.47361 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99818 * 274.86276 * 5 4 3 7 7 C 1.50699 * 109.47083 * 269.99575 * 6 5 4 8 8 H 1.07998 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00248 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99498 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00174 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47408 * 89.99956 * 11 9 7 13 13 H 1.48500 * 109.47095 * 209.99821 * 11 9 7 14 14 H 1.48495 * 109.47183 * 329.99651 * 11 9 7 15 15 C 1.34780 * 120.00086 * 94.85982 * 5 4 3 16 16 O 1.21719 * 119.99837 * 185.66210 * 15 5 4 17 17 C 1.46570 * 120.00194 * 5.65854 * 15 5 4 18 18 C 1.40536 * 126.57972 * 54.21510 * 17 15 5 19 19 N 1.30749 * 108.73883 * 180.02562 * 18 17 15 20 20 N 1.40022 * 109.60111 * 359.97438 * 19 18 17 21 21 C 1.36296 * 131.99982 * 179.97438 * 20 19 18 22 22 C 1.35168 * 120.74637 * 180.02562 * 21 20 19 23 23 C 1.40153 * 120.34596 * 359.77443 * 22 21 20 24 24 C 1.36628 * 119.38344 * 0.50309 * 23 22 21 25 25 F 1.35098 * 120.39247 * 179.75469 * 24 23 22 26 26 C 1.36530 * 107.90416 * 0.02562 * 20 19 18 27 27 H 1.09004 * 109.46977 * 89.12605 * 3 2 1 28 28 H 1.08995 * 109.47479 * 329.12407 * 3 2 1 29 29 H 1.08994 * 109.47571 * 59.99694 * 4 3 2 30 30 H 1.09011 * 109.47190 * 300.00103 * 4 3 2 31 31 H 1.08994 * 109.47148 * 29.99604 * 6 5 4 32 32 H 1.09001 * 109.47043 * 149.99956 * 6 5 4 33 33 H 0.96999 * 119.99729 * 179.97438 * 10 9 7 34 34 H 1.08004 * 125.62808 * 0.05580 * 18 17 15 35 35 H 1.07997 * 119.62818 * 0.03436 * 21 20 19 36 36 H 1.08001 * 119.82523 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.31120 * 180.25576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2610 0.7021 5 7 4.5824 1.2620 0.7016 6 6 5.3157 0.5531 1.7533 7 6 5.5667 1.4880 2.9083 8 1 5.2147 2.5081 2.8636 9 6 6.2456 1.0412 4.0220 10 7 6.6737 -0.2012 4.0765 11 14 6.5560 2.1998 5.4539 12 1 5.4266 2.1137 6.4143 13 1 7.8171 1.8154 6.1373 14 1 6.6711 3.5914 4.9487 15 6 5.2555 1.9151 -0.2663 16 8 6.4683 1.8312 -0.3270 17 6 4.5272 2.7263 -1.2460 18 6 3.6189 3.7617 -0.9664 19 7 3.1747 4.2472 -2.0962 20 7 3.7637 3.5621 -3.1659 21 6 3.6300 3.6913 -4.5161 22 6 4.3220 2.8923 -5.3586 23 6 5.1945 1.9183 -4.8544 24 6 5.3317 1.7765 -3.5024 25 9 6.1633 0.8409 -2.9942 26 6 4.6030 2.6178 -2.6483 27 1 2.9713 -0.0149 -1.0276 28 1 2.9718 -0.8811 0.5273 29 1 2.7541 1.2766 1.7296 30 1 2.7536 2.1429 0.1747 31 1 4.7273 -0.2980 2.0960 32 1 6.2682 0.2007 1.3576 33 1 7.1516 -0.5155 4.8599 34 1 3.3352 4.1007 0.0190 35 1 2.9637 4.4405 -4.9173 36 1 4.2050 3.0079 -6.4260 37 1 5.7503 1.2830 -5.5281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156915468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = 41.806138 kcal Electronic energy + Delta-G solvation = -25968.633007 eV Core-core repulsion = 22048.411057 eV Total energy + Delta-G solvation = -3920.221951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97077 -43.21937 -40.48633 -38.17707 -38.02289 -36.66674 -34.84907 -33.62775 -32.19362 -31.97925 -30.40322 -28.74786 -25.53193 -25.41682 -24.85389 -23.88620 -22.90732 -20.39589 -19.19377 -18.64409 -18.46591 -18.31947 -17.79638 -17.52151 -17.23907 -17.00216 -16.41731 -16.25845 -15.95952 -15.70319 -15.50648 -15.18728 -14.87891 -14.53763 -14.31685 -14.04094 -13.68997 -13.59039 -13.40044 -13.27642 -13.01816 -12.90477 -12.80154 -12.67409 -12.48679 -12.22639 -12.15564 -11.92463 -11.65548 -11.32186 -10.71238 -10.57823 -10.55629 -9.50260 -8.66704 -8.14895 -6.27668 -0.50976 -0.15509 1.01742 1.15309 1.42216 1.44599 1.54190 1.61204 1.75224 1.98426 2.17639 2.31953 2.49648 2.86438 3.02794 3.16353 3.21536 3.52310 3.68321 3.83340 3.93925 4.05742 4.11084 4.28137 4.40935 4.47126 4.68334 4.76380 4.81249 4.93623 4.96776 5.09917 5.19365 5.32390 5.37985 5.63311 5.66206 5.90200 6.14882 6.28276 6.51102 6.72714 6.81921 7.34791 7.50943 8.91912 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.004476 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.947685 B = 6254.180396 C = 7027.212974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.245 3.755 3 C -0.036 4.036 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.261 3.739 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.589 3.411 16 O -0.584 6.584 17 C -0.311 4.311 18 C 0.120 3.880 19 N -0.318 5.318 20 N -0.254 5.254 21 C 0.096 3.904 22 C -0.119 4.119 23 C -0.080 4.080 24 C 0.059 3.941 25 F -0.133 7.133 26 C 0.102 3.898 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.218 0.782 35 H 0.215 0.785 36 H 0.222 0.778 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 6.087 -21.805 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.072 4.072 3 C -0.077 4.077 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.140 3.860 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.785 3.215 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.378 3.622 16 O -0.464 6.464 17 C -0.326 4.326 18 C -0.058 4.058 19 N -0.139 5.139 20 N -0.018 5.018 21 C -0.029 4.029 22 C -0.139 4.139 23 C -0.104 4.104 24 C 0.038 3.962 25 F -0.111 7.111 26 C -0.020 4.020 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.231 0.769 36 H 0.239 0.761 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.981 6.820 -22.092 25.184 hybrid contribution 1.783 -0.569 1.912 2.676 sum -8.199 6.251 -20.180 22.661 Atomic orbital electron populations 1.81215 1.13921 1.10093 1.10585 1.29028 0.94805 0.91820 0.91576 1.19720 0.80534 1.02346 1.05108 1.21531 0.79404 0.97327 1.02623 1.47906 1.06560 1.51235 1.26166 1.18854 0.91446 0.91760 0.83954 1.21749 1.36488 0.98143 1.01538 0.92480 1.25735 0.95114 0.96687 1.01195 1.70039 1.39019 1.16945 1.30590 0.85524 0.77839 0.78962 0.79142 1.19090 1.21086 1.19796 1.17355 0.85954 0.78704 0.80213 1.90761 1.16105 1.64760 1.74788 1.19691 1.12674 1.09200 0.91063 1.24248 0.91268 0.91727 0.98600 1.77554 1.23623 1.20502 0.92250 1.46198 1.26838 1.21542 1.07256 1.22654 1.01508 1.02184 0.76527 1.21395 0.95497 0.93902 1.03117 1.21908 0.98123 0.99041 0.91350 1.17075 0.95160 0.91783 0.92232 1.91587 1.69074 1.62156 1.88299 1.19222 0.95889 0.93975 0.92924 0.86611 0.85840 0.88948 0.88607 0.94458 0.97784 0.92576 0.76582 0.76854 0.76136 0.79467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.65 18.54 20.01 0.37 -14.28 16 2 C 0.25 6.36 15.43 89.44 1.38 7.74 16 3 C -0.04 -0.87 6.03 28.79 0.17 -0.69 16 4 C 0.12 3.41 5.30 86.38 0.46 3.87 16 5 N -0.59 -23.83 2.46 -830.97 -2.04 -25.87 16 6 C 0.26 13.24 5.23 85.63 0.45 13.69 16 7 C -0.54 -29.83 9.39 25.60 0.24 -29.59 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.01 0.66 5.46 84.65 0.46 1.12 16 10 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 11 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.59 25.26 7.13 86.42 0.62 25.87 16 16 O -0.58 -31.19 16.11 -4.41 -0.07 -31.26 16 17 C -0.31 -10.48 5.06 -19.90 -0.10 -10.58 16 18 C 0.12 3.34 9.81 85.41 0.84 4.18 16 19 N -0.32 -8.15 12.58 -56.62 -0.71 -8.86 16 20 N -0.25 -5.70 3.86 -187.13 -0.72 -6.42 16 21 C 0.10 1.07 11.17 83.29 0.93 2.00 16 22 C -0.12 -0.73 9.98 22.03 0.22 -0.51 16 23 C -0.08 -1.04 10.07 22.36 0.23 -0.82 16 24 C 0.06 1.50 7.33 22.39 0.16 1.66 16 25 F -0.13 -4.43 16.34 44.97 0.73 -3.70 16 26 C 0.10 2.92 6.80 39.55 0.27 3.19 16 27 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 28 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 30 H 0.10 2.47 4.66 -2.38 -0.01 2.46 16 31 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.00 0.24 7.35 -2.39 -0.02 0.22 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.22 5.02 7.79 -2.91 -0.02 5.00 16 35 H 0.21 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.22 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -83.93 340.74 7.32 -76.60 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.13 Total: 0.77 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.32 Total: 21.12 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.82 Total: -109.73 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.07 Total: -31.26 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.73 Total: -3.70 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -83.93 7.32 -76.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156915468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.410 kcal (2) G-P(sol) polarization free energy of solvation -83.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds