Wall clock time and date at job start Tue Mar 31 2020 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00090 * 2 1 4 4 H 1.48505 * 109.47322 * 269.99892 * 3 2 1 5 5 H 1.48501 * 109.47600 * 29.99825 * 3 2 1 6 6 H 1.48502 * 109.47555 * 149.99789 * 3 2 1 7 7 C 1.37882 * 120.00075 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84699 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53381 * 231.32347 * 8 7 2 10 10 C 1.52955 * 109.40158 * 305.36921 * 9 8 7 11 11 H 1.08999 * 109.41654 * 303.49134 * 10 9 8 12 12 N 1.46504 * 109.41106 * 183.70548 * 10 9 8 13 13 C 1.38416 * 119.99876 * 155.00264 * 12 10 9 14 14 N 1.31964 * 120.14052 * 0.02562 * 13 12 10 15 15 C 1.32718 * 122.63281 * 180.02562 * 14 13 12 16 16 Cl 1.73602 * 119.02255 * 179.97438 * 15 14 13 17 17 C 1.36229 * 121.95434 * 359.97438 * 15 14 13 18 18 C 1.40793 * 118.85372 * 0.02562 * 17 15 14 19 19 C 1.40203 * 122.16471 * 179.97438 * 18 17 15 20 20 C 1.36281 * 119.47759 * 180.02562 * 19 18 17 21 21 C 1.39294 * 120.97408 * 0.02779 * 20 19 18 22 22 C 1.36292 * 121.04530 * 359.97157 * 21 20 19 23 23 C 1.40093 * 119.54451 * 359.72583 * 22 21 20 24 24 C 1.52965 * 109.81749 * 63.60214 * 10 9 8 25 25 C 1.51263 * 120.84906 * 179.97438 * 7 2 1 26 26 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.63007 * 111.60568 * 8 7 2 28 28 H 1.09004 * 109.63142 * 351.03500 * 8 7 2 29 29 H 1.08988 * 109.48104 * 65.35279 * 9 8 7 30 30 H 1.09004 * 109.47964 * 185.39757 * 9 8 7 31 31 H 0.97002 * 120.00003 * 335.00312 * 12 10 9 32 32 H 1.08005 * 120.57087 * 179.97438 * 17 15 14 33 33 H 1.07994 * 120.26492 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.51022 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.47186 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.22769 * 180.02562 * 22 21 20 37 37 H 1.08995 * 109.48255 * 176.42142 * 24 10 9 38 38 H 1.08998 * 109.49045 * 56.38123 * 24 10 9 39 39 H 1.09005 * 109.62818 * 248.38946 * 25 7 2 40 40 H 1.08994 * 109.63088 * 8.96468 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5739 -3.9124 -0.0004 12 7 3.8598 -4.4076 2.0160 13 6 5.0486 -5.0854 1.8080 14 7 5.7161 -4.9222 0.6814 15 6 6.8596 -5.5472 0.4300 16 17 7.6592 -5.2636 -1.0846 17 6 7.4244 -6.4048 1.3252 18 6 6.7726 -6.6326 2.5522 19 6 7.2915 -7.5009 3.5230 20 6 6.6144 -7.6813 4.6919 21 6 5.4150 -7.0164 4.9356 22 6 4.8831 -6.1655 4.0134 23 6 5.5550 -5.9509 2.8030 24 6 3.9907 -2.1310 1.1351 25 6 3.5170 -1.2165 0.0000 26 1 -0.4850 0.8400 -0.0004 27 1 1.4198 -3.0193 -0.9538 28 1 0.2036 -2.3409 0.1601 29 1 1.5899 -2.9197 2.0940 30 1 1.3706 -4.3733 1.0900 31 1 3.3710 -4.5288 2.8450 32 1 8.3558 -6.9019 1.0972 33 1 8.2198 -8.0234 3.3456 34 1 7.0134 -8.3504 5.4399 35 1 4.8985 -7.1776 5.8703 36 1 3.9524 -5.6564 4.2163 37 1 5.0748 -2.2347 1.0899 38 1 3.7066 -1.6976 2.0940 39 1 3.8772 -1.6006 -0.9545 40 1 3.8983 -0.2079 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:23 Heat of formation + Delta-G solvation = 34.901860 kcal Electronic energy + Delta-G solvation = -23531.193754 eV Core-core repulsion = 20142.549130 eV Total energy + Delta-G solvation = -3388.644624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94056 -38.02276 -37.30181 -36.22393 -34.67314 -32.44442 -31.46667 -30.89511 -29.74113 -28.92451 -26.91779 -24.01532 -23.66319 -22.33578 -21.48564 -21.22240 -19.55781 -18.39534 -17.68575 -16.73936 -16.17869 -15.55750 -15.29429 -14.89883 -14.77033 -14.44555 -13.98204 -13.89507 -13.32677 -13.08482 -12.85887 -12.68572 -12.50250 -12.18983 -11.97448 -11.87954 -11.48293 -11.29219 -11.11614 -11.00753 -10.81845 -10.68320 -10.30749 -10.16392 -10.01467 -9.54623 -9.37511 -9.19529 -9.07737 -8.92371 -8.57898 -8.46561 -7.29919 -6.11727 -4.02399 0.46488 0.80804 1.90522 1.94469 2.99862 3.27092 3.32882 3.35775 3.37115 4.03698 4.37785 4.46798 4.53038 4.71351 4.88150 4.93981 5.10358 5.14969 5.24759 5.55263 5.63161 5.67531 5.76751 5.83343 5.86829 6.17842 6.21239 6.27417 6.34015 6.46143 6.58039 6.68490 6.70780 6.85675 6.89257 6.98536 7.11872 7.32910 7.42505 7.49972 7.64030 7.70235 7.80598 8.24969 8.36543 8.94721 9.53393 10.97754 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.003832 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.294455 B = 7305.729708 C = 8432.376305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.487 4.487 8 C 0.014 3.986 9 C -0.116 4.116 10 C 0.159 3.841 11 H 0.085 0.915 12 N -0.694 5.694 13 C 0.470 3.530 14 N -0.559 5.559 15 C 0.233 3.767 16 Cl -0.045 7.045 17 C -0.231 4.231 18 C 0.027 3.973 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.069 4.069 23 C -0.154 4.154 24 C -0.110 4.110 25 C -0.018 4.018 26 H 0.264 0.736 27 H 0.007 0.993 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.404 0.596 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.020 0.980 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 -14.780 8.589 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.506 4.506 8 C -0.024 4.024 9 C -0.154 4.154 10 C 0.057 3.943 11 H 0.103 0.897 12 N -0.322 5.322 13 C 0.220 3.780 14 N -0.282 5.282 15 C 0.079 3.921 16 Cl -0.017 7.017 17 C -0.257 4.257 18 C 0.022 3.978 19 C -0.143 4.143 20 C -0.106 4.106 21 C -0.160 4.160 22 C -0.089 4.089 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.056 4.056 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.241 0.759 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.147 -13.940 7.612 19.995 hybrid contribution 0.632 0.431 0.804 1.110 sum 12.779 -13.509 8.416 20.411 Atomic orbital electron populations 1.69832 1.06137 1.26936 1.49990 1.24836 0.94701 0.98573 0.94520 0.86686 0.79985 0.83258 0.78589 1.20356 1.21701 1.18958 1.20056 0.89441 0.91397 1.49738 1.19328 0.98674 0.92766 0.91588 1.21963 0.92361 0.98655 1.02450 1.21186 0.94178 0.88816 0.90149 0.89699 1.45358 1.19984 1.45288 1.21528 1.18231 0.86295 0.86447 0.87011 1.66218 1.09909 1.30087 1.21961 1.20560 0.90574 0.92900 0.88102 1.98391 1.76653 1.95573 1.31051 1.21011 1.04048 1.05987 0.94623 1.17752 0.92298 0.94126 0.93627 1.20851 1.00636 0.99233 0.93603 1.20952 0.94686 0.98153 0.96843 1.20781 0.96874 0.98547 0.99842 1.20814 0.98778 0.97006 0.92265 1.18492 0.98110 1.02729 0.96609 1.21883 0.97375 0.94978 1.00666 1.19787 0.96476 0.95430 0.93894 0.92605 0.97482 0.92086 0.92788 0.94623 0.75857 0.84357 0.85163 0.85759 0.85731 0.85604 0.94362 0.93364 0.96130 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.73 55.43 0.71 -24.59 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.06 27.53 -169.99 -4.68 16.38 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.11 6.11 56.52 0.35 -5.77 16 7 C -0.49 -12.64 5.51 -98.93 -0.55 -13.19 16 8 C 0.01 0.35 5.97 -27.48 -0.16 0.18 16 9 C -0.12 -2.31 5.40 -26.63 -0.14 -2.45 16 10 C 0.16 3.02 2.36 -67.97 -0.16 2.86 16 11 H 0.08 1.78 7.55 -51.93 -0.39 1.39 16 12 N -0.69 -10.82 5.15 -53.64 -0.28 -11.10 16 13 C 0.47 7.45 7.50 -155.15 -1.16 6.29 16 14 N -0.56 -9.72 9.13 -9.57 -0.09 -9.81 16 15 C 0.23 3.57 7.21 -17.89 -0.13 3.45 16 16 Cl -0.05 -0.64 29.06 -51.86 -1.51 -2.15 16 17 C -0.23 -3.00 9.59 -39.34 -0.38 -3.37 16 18 C 0.03 0.34 5.74 -106.84 -0.61 -0.27 16 19 C -0.12 -1.22 9.81 -39.55 -0.39 -1.61 16 20 C -0.09 -0.75 9.95 -39.89 -0.40 -1.15 16 21 C -0.14 -1.29 9.95 -39.89 -0.40 -1.69 16 22 C -0.07 -0.75 9.51 -39.59 -0.38 -1.12 16 23 C -0.15 -2.08 5.75 -106.70 -0.61 -2.69 16 24 C -0.11 -2.28 5.52 -26.61 -0.15 -2.43 16 25 C -0.02 -0.42 5.59 -27.47 -0.15 -0.57 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16 29 H 0.05 1.08 8.14 -51.94 -0.42 0.65 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 5.24 6.75 -40.82 -0.28 4.96 16 32 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.15 6.51 -52.48 -0.34 0.81 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.82 4.59 -51.93 -0.24 0.58 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -29.10 336.63 -11.67 -40.77 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.03 Total: 1.21 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -5.87 Total: -15.80 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.34 Total: -45.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.68 Total: 16.38 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.51 Total: -2.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.10 -11.67 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.675 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds