Wall clock time and date at job start Tue Mar 31 2020 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00090 * 2 1 4 4 H 1.48505 * 109.47322 * 269.99892 * 3 2 1 5 5 H 1.48501 * 109.47600 * 29.99825 * 3 2 1 6 6 H 1.48502 * 109.47555 * 149.99789 * 3 2 1 7 7 C 1.37882 * 120.00075 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84699 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53381 * 231.32347 * 8 7 2 10 10 C 1.52955 * 109.40158 * 305.36921 * 9 8 7 11 11 H 1.08999 * 109.41654 * 303.49134 * 10 9 8 12 12 N 1.46504 * 109.41106 * 183.70548 * 10 9 8 13 13 C 1.38416 * 119.99876 * 155.00264 * 12 10 9 14 14 N 1.31964 * 120.14052 * 0.02562 * 13 12 10 15 15 C 1.32718 * 122.63281 * 180.02562 * 14 13 12 16 16 Cl 1.73602 * 119.02255 * 179.97438 * 15 14 13 17 17 C 1.36229 * 121.95434 * 359.97438 * 15 14 13 18 18 C 1.40793 * 118.85372 * 0.02562 * 17 15 14 19 19 C 1.40203 * 122.16471 * 179.97438 * 18 17 15 20 20 C 1.36281 * 119.47759 * 180.02562 * 19 18 17 21 21 C 1.39294 * 120.97408 * 0.02779 * 20 19 18 22 22 C 1.36292 * 121.04530 * 359.97157 * 21 20 19 23 23 C 1.40093 * 119.54451 * 359.72583 * 22 21 20 24 24 C 1.52965 * 109.81749 * 63.60214 * 10 9 8 25 25 C 1.51263 * 120.84906 * 179.97438 * 7 2 1 26 26 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.63007 * 111.60568 * 8 7 2 28 28 H 1.09004 * 109.63142 * 351.03500 * 8 7 2 29 29 H 1.08988 * 109.48104 * 65.35279 * 9 8 7 30 30 H 1.09004 * 109.47964 * 185.39757 * 9 8 7 31 31 H 0.97002 * 120.00003 * 335.00312 * 12 10 9 32 32 H 1.08005 * 120.57087 * 179.97438 * 17 15 14 33 33 H 1.07994 * 120.26492 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.51022 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.47186 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.22769 * 180.02562 * 22 21 20 37 37 H 1.08995 * 109.48255 * 176.42142 * 24 10 9 38 38 H 1.08998 * 109.49045 * 56.38123 * 24 10 9 39 39 H 1.09005 * 109.62818 * 248.38946 * 25 7 2 40 40 H 1.08994 * 109.63088 * 8.96468 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5739 -3.9124 -0.0004 12 7 3.8598 -4.4076 2.0160 13 6 5.0486 -5.0854 1.8080 14 7 5.7161 -4.9222 0.6814 15 6 6.8596 -5.5472 0.4300 16 17 7.6592 -5.2636 -1.0846 17 6 7.4244 -6.4048 1.3252 18 6 6.7726 -6.6326 2.5522 19 6 7.2915 -7.5009 3.5230 20 6 6.6144 -7.6813 4.6919 21 6 5.4150 -7.0164 4.9356 22 6 4.8831 -6.1655 4.0134 23 6 5.5550 -5.9509 2.8030 24 6 3.9907 -2.1310 1.1351 25 6 3.5170 -1.2165 0.0000 26 1 -0.4850 0.8400 -0.0004 27 1 1.4198 -3.0193 -0.9538 28 1 0.2036 -2.3409 0.1601 29 1 1.5899 -2.9197 2.0940 30 1 1.3706 -4.3733 1.0900 31 1 3.3710 -4.5288 2.8450 32 1 8.3558 -6.9019 1.0972 33 1 8.2198 -8.0234 3.3456 34 1 7.0134 -8.3504 5.4399 35 1 4.8985 -7.1776 5.8703 36 1 3.9524 -5.6564 4.2163 37 1 5.0748 -2.2347 1.0899 38 1 3.7066 -1.6976 2.0940 39 1 3.8772 -1.6006 -0.9545 40 1 3.8983 -0.2079 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:22 Heat of formation + Delta-G solvation = 20.529765 kcal Electronic energy + Delta-G solvation = -23531.816975 eV Core-core repulsion = 20142.549130 eV Total energy + Delta-G solvation = -3389.267845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91546 -39.35997 -38.38130 -37.37678 -36.05545 -34.04889 -32.60072 -31.97133 -31.48904 -30.08069 -28.51979 -25.05294 -24.66638 -23.79084 -23.24257 -22.39237 -21.22501 -19.43643 -18.71465 -18.04051 -17.63512 -16.65251 -16.43105 -16.37120 -15.93428 -15.88106 -15.07780 -14.86549 -14.82996 -14.60024 -14.30783 -14.03580 -13.83901 -13.59913 -13.50948 -13.01503 -12.79169 -12.71941 -12.58668 -12.37592 -12.22575 -12.01946 -11.93257 -11.79743 -11.46351 -11.24164 -10.88791 -10.64665 -10.55400 -10.42881 -10.10428 -9.87044 -8.36740 -8.17720 -6.11633 -0.43067 -0.09386 0.89725 1.00199 1.37557 1.40739 1.48378 2.10704 2.14282 2.40189 3.09906 3.10409 3.53987 3.72388 3.81887 4.00385 4.07121 4.15904 4.21839 4.39226 4.40326 4.51729 4.69078 4.70327 4.79908 4.90583 4.93343 4.96967 5.07261 5.10538 5.17849 5.25313 5.26163 5.45626 5.52007 5.54804 5.56308 5.61753 5.75022 5.80356 5.96692 6.06170 6.33310 6.36874 6.93647 7.16805 7.46469 8.92816 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.003832 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.294455 B = 7305.729708 C = 8432.376305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.496 4.496 8 C 0.010 3.990 9 C -0.102 4.102 10 C 0.179 3.821 11 H 0.062 0.938 12 N -0.693 5.693 13 C 0.453 3.547 14 N -0.595 5.595 15 C 0.196 3.804 16 Cl -0.050 7.050 17 C -0.209 4.209 18 C 0.003 3.997 19 C -0.124 4.124 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.088 4.088 23 C -0.161 4.161 24 C -0.100 4.100 25 C -0.019 4.019 26 H 0.263 0.737 27 H -0.003 1.003 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.417 0.583 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.013 0.987 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.649 -16.834 11.378 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.178 1.178 7 C -0.516 4.516 8 C -0.027 4.027 9 C -0.140 4.140 10 C 0.075 3.925 11 H 0.080 0.920 12 N -0.325 5.325 13 C 0.203 3.797 14 N -0.318 5.318 15 C 0.044 3.956 16 Cl -0.021 7.021 17 C -0.234 4.234 18 C -0.002 4.002 19 C -0.142 4.142 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.167 4.167 24 C -0.139 4.139 25 C -0.057 4.057 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.226 -16.029 10.407 23.825 hybrid contribution 0.085 0.871 0.032 0.875 sum 14.311 -15.159 10.439 23.314 Atomic orbital electron populations 1.69952 1.07462 1.27461 1.51993 1.25535 0.95324 1.01533 0.94846 0.85875 0.79331 0.79937 0.78565 1.20305 1.21560 1.17786 1.20587 0.90826 0.91961 1.48199 1.19277 0.97251 0.93337 0.92884 1.21715 0.93133 0.98773 1.00427 1.20610 0.93145 0.88422 0.90329 0.91966 1.44876 1.20690 1.45584 1.21308 1.18411 0.86261 0.87392 0.87586 1.66064 1.11115 1.31417 1.23239 1.20751 0.91061 0.94871 0.88953 1.98373 1.76588 1.95757 1.31429 1.21351 1.04124 1.03937 0.93985 1.18087 0.92478 0.95332 0.94349 1.21203 1.01572 0.98263 0.93144 1.21433 0.93992 0.97659 0.96969 1.21249 0.96687 0.96472 1.00157 1.21042 0.99613 0.98283 0.91870 1.18641 0.98709 1.02342 0.96970 1.21729 0.97435 0.95507 0.99256 1.19775 0.94997 0.96120 0.94775 0.92751 0.98505 0.94807 0.92591 0.92519 0.74382 0.81951 0.82503 0.82121 0.82720 0.84373 0.94276 0.93305 0.96826 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 12.73 21.45 0.27 -53.97 16 2 C 0.03 1.44 5.46 84.66 0.46 1.90 16 3 Si 0.94 43.69 27.53 68.60 1.89 45.58 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.25 6.11 99.48 0.61 -10.64 16 7 C -0.50 -26.29 5.51 -16.17 -0.09 -26.38 16 8 C 0.01 0.53 5.97 30.11 0.18 0.70 16 9 C -0.10 -4.08 5.40 30.66 0.17 -3.91 16 10 C 0.18 6.84 2.36 44.96 0.11 6.95 16 11 H 0.06 2.67 7.55 -2.39 -0.02 2.66 16 12 N -0.69 -21.23 5.15 -323.61 -1.67 -22.90 16 13 C 0.45 14.15 7.50 133.92 1.00 15.16 16 14 N -0.59 -20.90 9.13 -184.20 -1.68 -22.58 16 15 C 0.20 5.98 7.21 84.09 0.61 6.59 16 16 Cl -0.05 -1.42 29.06 -2.72 -0.08 -1.50 16 17 C -0.21 -5.09 9.59 22.43 0.22 -4.87 16 18 C 0.00 0.06 5.74 -21.30 -0.12 -0.06 16 19 C -0.12 -1.90 9.81 22.29 0.22 -1.68 16 20 C -0.08 -0.98 9.95 22.07 0.22 -0.76 16 21 C -0.13 -1.73 9.95 22.07 0.22 -1.51 16 22 C -0.09 -1.66 9.51 22.27 0.21 -1.45 16 23 C -0.16 -4.07 5.75 -21.21 -0.12 -4.20 16 24 C -0.10 -4.16 5.52 30.67 0.17 -3.99 16 25 C -0.02 -0.88 5.59 30.12 0.17 -0.72 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.03 1.85 7.07 -2.38 -0.02 1.83 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.42 10.28 6.75 -92.71 -0.63 9.66 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.14 2.15 6.51 -2.91 -0.02 2.14 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.03 1.58 4.59 -2.39 -0.01 1.57 16 Total: -1.00 -65.39 336.63 2.70 -62.70 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.35 Total: 10.91 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.61 Total: -18.24 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -3.07 Total: -99.45 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.89 Total: 45.58 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -65.39 2.70 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.227 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds