Wall clock time and date at job start Tue Mar 31 2020 11:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99877 * 179.97438 * 14 13 3 17 17 C 1.39649 * 120.48846 * 359.72404 * 16 14 13 18 18 N 1.31712 * 120.88151 * 179.72457 * 17 16 14 19 19 C 1.31780 * 122.04493 * 0.58295 * 18 17 16 20 20 C 1.39631 * 120.87419 * 359.68388 * 19 18 17 21 21 C 1.47852 * 120.48799 * 179.97438 * 20 19 18 22 22 C 1.34777 * 125.27255 * 0.02562 * 21 20 19 23 23 C 1.37971 * 114.70993 * 179.97438 * 22 21 20 24 24 C 1.33610 * 115.06139 * 359.97438 * 23 22 21 25 25 S 1.75864 * 109.75618 * 359.73701 * 24 23 22 26 26 C 1.39740 * 120.49405 * 179.97438 * 16 14 13 27 27 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 28 28 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 29 29 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 31 31 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 32 32 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 33 33 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 34 34 H 1.08000 * 119.55861 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.55778 * 179.70036 * 19 18 17 36 36 H 1.08007 * 122.64832 * 0.02562 * 22 21 20 37 37 H 1.07999 * 122.47151 * 180.02562 * 23 22 21 38 38 H 1.08003 * 125.12352 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.91751 * 359.95445 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0614 3.3188 2.6482 17 6 0.9501 3.3537 3.7249 18 7 0.6191 3.9421 4.8558 19 6 -0.5570 4.5105 5.0302 20 6 -1.5082 4.5173 4.0080 21 6 -2.8253 5.1570 4.2131 22 6 -3.2256 5.7683 5.3456 23 6 -4.5010 6.2926 5.2981 24 6 -5.1430 6.1154 4.1398 25 16 -4.1087 5.2463 3.0139 26 6 -1.1970 3.9100 2.7885 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.9924 1.1426 -0.6139 33 1 2.2853 2.1184 1.9978 34 1 1.9233 2.8957 3.6275 35 1 -0.7880 4.9775 5.9762 36 1 -2.5974 5.8428 6.2210 37 1 -4.9472 6.8089 6.1352 38 1 -6.1443 6.4586 3.9255 39 1 -1.9093 3.8980 1.9768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191830007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:46 Heat of formation + Delta-G solvation = 26.343004 kcal Electronic energy + Delta-G solvation = -22976.288495 eV Core-core repulsion = 19589.316437 eV Total energy + Delta-G solvation = -3386.972058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65167 -38.96970 -37.90191 -35.43105 -33.39780 -32.78804 -32.19861 -31.12904 -28.63861 -27.32490 -25.25199 -24.19324 -23.05144 -22.35943 -21.08112 -19.77913 -19.36596 -18.57067 -17.58435 -17.14122 -16.65590 -16.16110 -15.69393 -15.34384 -14.94905 -14.32004 -14.06023 -13.77267 -13.43873 -13.25053 -13.19813 -12.94350 -12.86636 -12.61604 -12.52175 -12.33582 -12.14699 -11.86074 -11.12523 -10.99032 -10.76841 -10.51749 -10.50473 -10.05630 -9.86005 -9.75101 -9.62477 -9.30589 -8.94583 -8.82828 -8.56298 -8.41294 -8.20479 -6.60029 -4.28263 0.05116 0.70366 1.24562 1.32098 1.66546 2.44157 3.14750 3.33259 3.42815 3.56158 3.65531 3.88309 4.08234 4.29431 4.37524 4.58116 4.70615 4.73996 4.84432 5.08694 5.15163 5.16947 5.21542 5.36360 5.63022 5.83369 5.88515 5.92889 5.97092 6.01750 6.11592 6.17730 6.31766 6.62972 6.69589 6.82127 6.94384 7.23785 7.27185 7.55160 7.64848 8.17518 8.31524 8.60568 8.81848 9.42404 10.80850 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003038 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.800807 B = 9215.566942 C = 9936.177701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.612 4.612 6 H 0.063 0.937 7 C 0.037 3.963 8 N -0.903 5.903 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.691 5.691 14 C 0.547 3.453 15 O -0.540 6.540 16 C -0.165 4.165 17 C 0.133 3.867 18 N -0.478 5.478 19 C 0.132 3.868 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.217 4.217 25 S 0.133 5.867 26 C -0.016 4.016 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.269 0.731 33 H 0.392 0.608 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 8.987 13.792 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.650 4.650 6 H 0.081 0.919 7 C -0.169 4.169 8 N -0.536 5.536 9 Si 0.876 3.124 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.338 5.338 14 C 0.332 3.668 15 O -0.420 6.420 16 C -0.170 4.170 17 C -0.025 4.025 18 N -0.186 5.186 19 C -0.028 4.028 20 C -0.083 4.083 21 C -0.256 4.256 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.353 4.353 25 S 0.399 5.601 26 C -0.043 4.043 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.410 7.830 10.733 22.703 hybrid contribution -0.172 1.145 2.779 3.011 sum -18.582 8.975 13.513 24.666 Atomic orbital electron populations 1.21903 0.97150 0.99139 1.02119 1.22262 0.94022 0.99747 1.01577 1.19325 0.96117 0.88603 0.82140 0.93093 1.22147 0.89515 1.48398 1.04916 0.91888 1.25694 0.97493 0.93535 1.00193 1.70833 1.04415 1.42274 1.36072 0.83957 0.75342 0.77220 0.75843 1.20639 1.19836 1.21343 1.46223 1.14057 1.55180 1.18350 1.17938 0.83136 0.79368 0.86403 1.90751 1.51093 1.60012 1.40111 1.21232 0.95993 1.02764 0.97009 1.23166 0.98950 0.93049 0.87319 1.67688 1.18191 1.08877 1.23819 1.23004 0.87794 0.94104 0.97896 1.18974 0.92962 1.00906 0.95453 1.22823 0.97449 1.06911 0.98421 1.20323 0.96916 1.00393 0.98314 1.20060 0.94688 1.02969 0.98645 1.25819 1.04425 1.07283 0.97774 1.84514 1.05696 1.54256 1.15602 1.21780 0.95463 0.91117 0.95955 0.93256 0.92798 0.94817 0.92027 0.92582 0.92063 0.77332 0.81814 0.82128 0.83857 0.83991 0.81642 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.52 37.15 0.32 -2.55 16 2 C -0.14 -2.97 5.20 -26.74 -0.14 -3.11 16 3 C 0.24 5.60 1.81 -69.08 -0.13 5.47 16 4 H 0.05 1.30 6.07 -51.93 -0.32 0.99 16 5 C -0.61 -16.14 9.09 -34.44 -0.31 -16.46 16 6 H 0.06 1.73 7.95 -52.48 -0.42 1.31 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -26.66 13.70 55.43 0.76 -25.90 16 9 Si 1.05 25.02 25.39 -169.99 -4.32 20.70 16 10 H -0.28 -6.32 6.73 56.52 0.38 -5.94 16 11 H -0.27 -6.29 6.38 56.52 0.36 -5.93 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.69 -13.47 4.98 -55.87 -0.28 -13.75 16 14 C 0.55 10.24 6.37 -12.32 -0.08 10.16 16 15 O -0.54 -11.55 13.55 5.32 0.07 -11.48 16 16 C -0.16 -2.52 5.88 -104.87 -0.62 -3.13 16 17 C 0.13 1.82 10.71 -17.08 -0.18 1.63 16 18 N -0.48 -6.25 10.33 -12.58 -0.13 -6.38 16 19 C 0.13 1.48 10.71 -17.05 -0.18 1.29 16 20 C -0.08 -0.94 5.88 -104.88 -0.62 -1.56 16 21 C -0.14 -1.44 6.38 -36.88 -0.24 -1.67 16 22 C -0.13 -1.09 9.66 -40.91 -0.40 -1.48 16 23 C -0.13 -0.99 10.16 -41.30 -0.42 -1.41 16 24 C -0.22 -1.67 11.22 29.11 0.33 -1.34 16 25 S 0.13 1.30 22.34 -107.50 -2.40 -1.10 16 26 C -0.02 -0.22 9.25 -38.46 -0.36 -0.58 16 27 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 28 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.39 4.43 -51.93 -0.23 1.16 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.27 7.86 8.72 -40.82 -0.36 7.50 16 33 H 0.39 6.73 6.58 -40.82 -0.27 6.46 16 34 H 0.16 1.98 6.41 -52.49 -0.34 1.64 16 35 H 0.16 1.27 6.77 -52.49 -0.36 0.92 16 36 H 0.14 0.89 6.91 -52.48 -0.36 0.53 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.15 2.07 7.06 -52.48 -0.37 1.70 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -31.15 333.58 -8.64 -39.80 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.26 Total: 6.90 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.11 Total: -13.81 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.35 Total: -46.03 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.32 Total: 20.70 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.40 Total: -1.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.15 -8.64 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191830007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.139 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds