Wall clock time and date at job start Tue Mar 31 2020 11:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99877 * 179.97438 * 14 13 3 17 17 C 1.39649 * 120.48846 * 359.72404 * 16 14 13 18 18 N 1.31712 * 120.88151 * 179.72457 * 17 16 14 19 19 C 1.31780 * 122.04493 * 0.58295 * 18 17 16 20 20 C 1.39631 * 120.87419 * 359.68388 * 19 18 17 21 21 C 1.47852 * 120.48799 * 179.97438 * 20 19 18 22 22 C 1.34777 * 125.27255 * 0.02562 * 21 20 19 23 23 C 1.37971 * 114.70993 * 179.97438 * 22 21 20 24 24 C 1.33610 * 115.06139 * 359.97438 * 23 22 21 25 25 S 1.75864 * 109.75618 * 359.73701 * 24 23 22 26 26 C 1.39740 * 120.49405 * 179.97438 * 16 14 13 27 27 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 28 28 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 29 29 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 31 31 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 32 32 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 33 33 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 34 34 H 1.08000 * 119.55861 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.55778 * 179.70036 * 19 18 17 36 36 H 1.08007 * 122.64832 * 0.02562 * 22 21 20 37 37 H 1.07999 * 122.47151 * 180.02562 * 23 22 21 38 38 H 1.08003 * 125.12352 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.91751 * 359.95445 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0614 3.3188 2.6482 17 6 0.9501 3.3537 3.7249 18 7 0.6191 3.9421 4.8558 19 6 -0.5570 4.5105 5.0302 20 6 -1.5082 4.5173 4.0080 21 6 -2.8253 5.1570 4.2131 22 6 -3.2256 5.7683 5.3456 23 6 -4.5010 6.2926 5.2981 24 6 -5.1430 6.1154 4.1398 25 16 -4.1087 5.2463 3.0139 26 6 -1.1970 3.9100 2.7885 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.9924 1.1426 -0.6139 33 1 2.2853 2.1184 1.9978 34 1 1.9233 2.8957 3.6275 35 1 -0.7880 4.9775 5.9762 36 1 -2.5974 5.8428 6.2210 37 1 -4.9472 6.8089 6.1352 38 1 -6.1443 6.4586 3.9255 39 1 -1.9093 3.8980 1.9768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191830007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:46 Heat of formation + Delta-G solvation = 6.508987 kcal Electronic energy + Delta-G solvation = -22977.148562 eV Core-core repulsion = 19589.316437 eV Total energy + Delta-G solvation = -3387.832125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79376 -40.35042 -38.59965 -37.18253 -34.65334 -34.19923 -33.84155 -32.49934 -29.56113 -29.02315 -26.22381 -25.24197 -24.18722 -23.97447 -22.46663 -21.42897 -20.39564 -19.81339 -19.08314 -18.10462 -17.82889 -17.39193 -16.94307 -16.47260 -16.30092 -15.76364 -15.19796 -15.15229 -14.62506 -14.52995 -14.43377 -14.32199 -14.09733 -13.91192 -13.66701 -13.61683 -13.51566 -12.94813 -12.74943 -12.52148 -12.31720 -11.79478 -11.73211 -11.55999 -11.38869 -11.27400 -10.98110 -10.72490 -10.67318 -10.57934 -9.91336 -9.52997 -9.17357 -8.79865 -6.48351 -0.78752 -0.36209 0.49647 0.56316 1.03103 1.40928 1.50615 1.67753 1.70747 1.95471 2.22528 2.39236 2.74660 3.01991 3.12924 3.40085 3.63556 3.64886 3.72307 4.07921 4.22515 4.25798 4.27575 4.34892 4.48589 4.53772 4.63496 4.79804 4.81787 4.90527 5.04381 5.10204 5.13712 5.24828 5.26212 5.38737 5.50647 5.52215 5.53852 5.61285 5.98520 6.49088 6.63883 6.70437 7.20142 7.31548 8.60206 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.003038 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.800807 B = 9215.566942 C = 9936.177701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.029 0.971 5 C -0.605 4.605 6 H 0.043 0.957 7 C -0.008 4.008 8 N -0.934 5.934 9 Si 1.078 2.922 10 H -0.256 1.256 11 H -0.265 1.265 12 H -0.287 1.287 13 N -0.692 5.692 14 C 0.550 3.450 15 O -0.571 6.571 16 C -0.181 4.181 17 C 0.132 3.868 18 N -0.486 5.486 19 C 0.140 3.860 20 C -0.068 4.068 21 C -0.169 4.169 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.202 4.202 25 S 0.083 5.917 26 C -0.027 4.027 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.258 0.742 33 H 0.403 0.597 34 H 0.173 0.827 35 H 0.200 0.800 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.190 0.810 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.819 9.828 16.185 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.142 3.858 4 H 0.046 0.954 5 C -0.644 4.644 6 H 0.061 0.939 7 C -0.208 4.208 8 N -0.569 5.569 9 Si 0.901 3.099 10 H -0.181 1.181 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.341 5.341 14 C 0.337 3.663 15 O -0.452 6.452 16 C -0.186 4.186 17 C -0.025 4.025 18 N -0.193 5.193 19 C -0.019 4.019 20 C -0.072 4.072 21 C -0.287 4.287 22 C -0.141 4.141 23 C -0.169 4.169 24 C -0.338 4.338 25 S 0.349 5.651 26 C -0.054 4.054 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.239 0.761 34 H 0.190 0.810 35 H 0.217 0.783 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.208 0.792 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.868 8.672 13.165 26.153 hybrid contribution 0.452 1.056 2.218 2.497 sum -20.416 9.728 15.382 27.351 Atomic orbital electron populations 1.21785 0.95401 1.00675 1.01447 1.22167 0.95517 0.98154 1.01548 1.18997 0.93762 0.89876 0.83168 0.95356 1.22340 0.91308 1.46754 1.03961 0.93861 1.26814 0.97683 0.93592 1.02718 1.70932 1.05361 1.44605 1.36039 0.83575 0.74412 0.78596 0.73324 1.18123 1.19001 1.21378 1.46020 1.14967 1.55553 1.17549 1.18345 0.82163 0.78487 0.87281 1.90724 1.51827 1.61095 1.41590 1.20881 0.97250 1.04585 0.95878 1.23239 0.99006 0.93176 0.87119 1.67777 1.19136 1.09231 1.23203 1.23624 0.86680 0.92683 0.98924 1.19087 0.93900 0.99743 0.94465 1.22762 0.97053 1.09393 0.99457 1.20752 0.97402 0.97861 0.98075 1.20442 0.94281 1.02757 0.99376 1.26180 1.04941 1.05725 0.96933 1.84736 1.07191 1.55747 1.17396 1.21794 0.94878 0.91837 0.96939 0.93490 0.93955 0.92081 0.92706 0.91920 0.93236 0.76103 0.80980 0.78292 0.81185 0.80901 0.79249 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.52 71.98 0.61 -4.58 16 2 C -0.14 -5.77 5.20 30.59 0.16 -5.61 16 3 C 0.25 11.56 1.81 44.24 0.08 11.64 16 4 H 0.03 1.48 6.07 -2.39 -0.01 1.46 16 5 C -0.61 -32.65 9.09 25.60 0.23 -32.42 16 6 H 0.04 2.45 7.95 -2.91 -0.02 2.43 16 7 C -0.01 -0.45 5.42 84.65 0.46 0.01 16 8 N -0.93 -56.48 13.70 21.45 0.29 -56.18 16 9 Si 1.08 50.62 25.39 68.60 1.74 52.36 16 10 H -0.26 -11.01 6.73 99.48 0.67 -10.34 16 11 H -0.26 -12.02 6.38 99.48 0.63 -11.39 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 N -0.69 -27.41 4.98 -448.96 -2.24 -29.65 16 14 C 0.55 20.98 6.37 86.79 0.55 21.53 16 15 O -0.57 -25.02 13.55 -3.88 -0.05 -25.07 16 16 C -0.18 -5.55 5.88 -20.03 -0.12 -5.66 16 17 C 0.13 3.52 10.71 85.05 0.91 4.43 16 18 N -0.49 -11.78 10.33 -193.72 -2.00 -13.78 16 19 C 0.14 2.76 10.71 85.04 0.91 3.67 16 20 C -0.07 -1.52 5.88 -20.03 -0.12 -1.64 16 21 C -0.17 -3.18 6.38 24.02 0.15 -3.02 16 22 C -0.11 -1.43 9.66 21.41 0.21 -1.22 16 23 C -0.14 -1.50 10.16 21.16 0.21 -1.28 16 24 C -0.20 -2.51 11.22 66.77 0.75 -1.76 16 25 S 0.08 1.56 22.34 -56.49 -1.26 0.30 16 26 C -0.03 -0.77 9.25 23.00 0.21 -0.56 16 27 H 0.05 1.80 5.64 -2.39 -0.01 1.79 16 28 H 0.04 1.70 7.87 -2.38 -0.02 1.68 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 2.41 4.43 -2.39 -0.01 2.40 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.26 15.63 8.72 -92.71 -0.81 14.82 16 33 H 0.40 14.05 6.58 -92.71 -0.61 13.44 16 34 H 0.17 4.10 6.41 -2.91 -0.02 4.08 16 35 H 0.20 2.24 6.77 -2.91 -0.02 2.22 16 36 H 0.17 1.22 6.91 -2.91 -0.02 1.20 16 37 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 38 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.14 4.03 7.06 -2.91 -0.02 4.01 16 Total: -1.00 -68.86 333.58 2.05 -66.81 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.35 Total: 21.71 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.22 Total: -16.49 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -3.94 Total: -99.61 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 1.74 Total: 52.36 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.26 Total: 0.30 kcal Total: -68.86 2.05 -66.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191830007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.315 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds