Wall clock time and date at job start Tue Mar 31 2020 11:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 O 1.42893 * 109.47543 * 179.97438 * 3 2 1 5 5 C 1.35836 * 117.00358 * 179.97438 * 4 3 2 6 6 C 1.38949 * 119.90851 * 359.97438 * 5 4 3 7 7 C 1.37764 * 120.10399 * 179.97438 * 6 5 4 8 8 C 1.39752 * 119.92601 * 0.02562 * 7 6 5 9 9 C 1.47772 * 120.08575 * 179.97438 * 8 7 6 10 10 C 1.39240 * 120.34051 * 309.99780 * 9 8 7 11 11 C 1.38024 * 119.97826 * 180.02562 * 10 9 8 12 12 C 1.38956 * 120.68692 * 0.02634 * 11 10 9 13 13 C 1.36414 * 120.69890 * 359.97438 * 12 11 10 14 14 C 1.40758 * 119.98710 * 359.72197 * 13 12 11 15 15 C 1.40847 * 120.33506 * 180.28188 * 14 13 12 16 16 H 1.08004 * 120.00059 * 153.73217 * 15 14 13 17 17 C 1.40038 * 119.99937 * 333.72369 * 15 14 13 18 18 N 1.30787 * 120.00057 * 342.96818 * 17 15 14 19 19 Si 1.86807 * 120.00106 * 162.96885 * 17 15 14 20 20 H 1.48504 * 109.46706 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47121 * 119.99941 * 19 17 15 22 22 H 1.48497 * 109.46887 * 240.00301 * 19 17 15 23 23 C 1.39720 * 119.82943 * 0.02562 * 8 7 6 24 24 C 1.37877 * 119.89229 * 359.97438 * 23 8 7 25 25 Cl 1.73594 * 119.96588 * 179.97438 * 24 23 8 26 26 H 1.08999 * 109.47008 * 60.00219 * 1 2 3 27 27 H 1.08996 * 109.47623 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47260 * 300.00214 * 1 2 3 29 29 H 1.08996 * 109.47392 * 239.99670 * 2 1 3 30 30 H 1.08999 * 109.47008 * 119.99781 * 2 1 3 31 31 H 1.09005 * 109.47075 * 59.99672 * 3 2 1 32 32 H 1.09006 * 109.47210 * 299.99957 * 3 2 1 33 33 H 1.07994 * 119.94596 * 0.02562 * 6 5 4 34 34 H 1.07996 * 120.03230 * 180.30118 * 7 6 5 35 35 H 1.08001 * 120.00972 * 0.02699 * 10 9 8 36 36 H 1.08001 * 119.65886 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.65486 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.00508 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00217 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.05557 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0857 2.6528 0.0001 6 6 3.3271 3.8169 -0.0014 7 6 3.9484 5.0465 -0.0014 8 6 5.3439 5.1225 -0.0003 9 6 6.0140 6.4396 -0.0008 10 6 5.6453 7.4160 -0.9224 11 6 6.2765 8.6434 -0.9166 12 6 7.2818 8.9195 0.0022 13 6 7.6650 7.9833 0.9174 14 6 7.0363 6.7242 0.9415 15 6 7.4221 5.7543 1.8871 16 1 6.7191 4.9972 2.2018 17 6 8.7173 5.7716 2.4192 18 7 9.6613 6.4505 1.8204 19 14 9.0969 4.8250 3.9844 20 1 7.8664 4.1442 4.4617 21 1 10.1470 3.8121 3.7079 22 1 9.5788 5.7659 5.0272 23 6 6.1038 3.9501 0.0002 24 6 5.4744 2.7233 0.0001 25 17 6.4167 1.2654 0.0001 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.2488 3.7577 -0.0018 34 1 3.3577 5.9506 0.0024 35 1 4.8656 7.2130 -1.6417 36 1 5.9861 9.3971 -1.6335 37 1 7.7648 9.8854 -0.0084 38 1 8.4479 8.2097 1.6261 39 1 10.5584 6.4627 2.1892 40 1 7.1824 4.0046 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204785266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:11 Heat of formation + Delta-G solvation = -30.296273 kcal Electronic energy + Delta-G solvation = -23135.690931 eV Core-core repulsion = 19711.926352 eV Total energy + Delta-G solvation = -3423.764579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16164 -39.68811 -38.19692 -37.23678 -35.56873 -34.81828 -32.71488 -31.91222 -31.26167 -29.33366 -27.56930 -26.88897 -24.05231 -23.73215 -22.66624 -21.99741 -21.36618 -19.34813 -18.99946 -17.59742 -17.22679 -17.02809 -16.89551 -16.05914 -15.50151 -15.39323 -15.20056 -14.96448 -14.84671 -14.46923 -14.37484 -13.82804 -13.49694 -13.48450 -13.11626 -13.01788 -12.89143 -12.82644 -12.53777 -12.46712 -12.30048 -12.14484 -12.09295 -11.86069 -11.73257 -11.53775 -11.31650 -11.21272 -11.06071 -9.79620 -9.55237 -9.28368 -8.78742 -8.54389 -6.28558 0.21409 0.31680 1.00560 1.16710 1.29940 1.35907 1.47974 1.50338 2.18460 2.18838 2.71768 2.78543 3.73780 3.84219 3.95167 3.99052 4.10156 4.19753 4.32365 4.42937 4.48895 4.52771 4.59249 4.61892 4.70357 4.82680 4.87221 4.92307 5.14029 5.15464 5.19534 5.21415 5.27291 5.32944 5.38136 5.46202 5.67877 5.72197 5.78167 6.07025 6.15797 6.22508 6.39388 6.41702 6.71045 6.94693 7.05345 8.30531 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.004338 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.715754 B = 6452.991859 C = 7835.864279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.048 3.952 4 O -0.321 6.321 5 C 0.118 3.882 6 C -0.187 4.187 7 C -0.081 4.081 8 C -0.029 4.029 9 C -0.190 4.190 10 C -0.076 4.076 11 C -0.241 4.241 12 C -0.108 4.108 13 C -0.186 4.186 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.073 0.927 17 C 0.044 3.956 18 N -0.818 5.818 19 Si 0.960 3.040 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.064 4.064 24 C -0.081 4.081 25 Cl -0.073 7.073 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.288 0.712 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 -8.334 -2.433 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.026 4.026 4 O -0.235 6.235 5 C 0.071 3.929 6 C -0.205 4.205 7 C -0.099 4.099 8 C -0.029 4.029 9 C -0.191 4.191 10 C -0.094 4.094 11 C -0.260 4.260 12 C -0.126 4.126 13 C -0.205 4.205 14 C 0.098 3.902 15 C -0.502 4.502 16 H 0.091 0.909 17 C -0.172 4.172 18 N -0.443 5.443 19 Si 0.782 3.218 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.083 4.083 24 C -0.108 4.108 25 Cl -0.045 7.045 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.538 -8.621 -2.422 16.231 hybrid contribution 0.961 -0.151 0.723 1.212 sum -12.577 -8.771 -1.699 15.428 Atomic orbital electron populations 1.21671 0.92522 1.03192 1.02790 1.21487 0.97289 0.93772 1.03264 1.23200 0.76777 1.00149 1.02522 1.86069 1.23103 1.25788 1.88548 1.18665 0.89724 0.85790 0.98686 1.21289 1.01035 0.90357 1.07853 1.21375 0.92930 0.98192 0.97406 1.18680 0.92964 0.91804 0.99468 1.18803 1.05332 0.93727 1.01245 1.20908 0.98565 0.92911 0.97037 1.20663 1.02672 0.98365 1.04268 1.20764 0.97375 0.98320 0.96128 1.21018 1.03482 0.94045 1.01986 1.17864 0.89829 0.92154 0.90339 1.19619 0.97428 1.12262 1.20906 0.90916 1.26560 0.95543 0.95431 0.99681 1.69846 1.02869 1.34705 1.36900 0.85472 0.79143 0.78841 0.78380 1.18583 1.19217 1.18566 1.20996 1.00169 0.89716 0.97446 1.20148 0.89332 0.87828 1.13505 1.98306 1.72626 1.36198 1.97343 0.91676 0.90971 0.91873 0.91239 0.91485 0.91060 0.90675 0.81639 0.83813 0.86306 0.86295 0.87427 0.88276 0.90132 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.91 6.30 30.59 0.19 -1.71 16 3 C 0.05 0.93 4.74 71.98 0.34 1.27 16 4 O -0.32 -9.23 9.58 -91.71 -0.88 -10.11 16 5 C 0.12 3.84 6.69 22.64 0.15 3.99 16 6 C -0.19 -5.37 9.02 22.33 0.20 -5.17 16 7 C -0.08 -2.70 9.51 22.52 0.21 -2.49 16 8 C -0.03 -1.19 4.92 -20.03 -0.10 -1.29 16 9 C -0.19 -8.81 5.52 -19.61 -0.11 -8.92 16 10 C -0.08 -3.18 9.51 22.46 0.21 -2.97 16 11 C -0.24 -9.98 10.03 22.39 0.22 -9.76 16 12 C -0.11 -4.86 9.96 22.02 0.22 -4.64 16 13 C -0.19 -9.57 8.62 22.46 0.19 -9.38 16 14 C 0.10 5.25 5.55 -21.12 -0.12 5.13 16 15 C -0.47 -24.81 7.13 23.35 0.17 -24.65 16 16 H 0.07 3.84 6.65 -2.91 -0.02 3.82 16 17 C 0.04 2.19 5.14 85.29 0.44 2.63 16 18 N -0.82 -42.20 11.03 21.84 0.24 -41.96 16 19 Si 0.96 38.99 29.59 68.60 2.03 41.02 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.06 -2.74 7.78 22.54 0.18 -2.56 16 24 C -0.08 -3.07 6.33 22.38 0.14 -2.93 16 25 Cl -0.07 -2.62 28.49 -2.72 -0.08 -2.70 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.24 7.66 -2.38 -0.02 1.22 16 32 H 0.08 1.24 7.65 -2.38 -0.02 1.22 16 33 H 0.17 3.39 6.28 -2.91 -0.02 3.37 16 34 H 0.14 4.18 8.04 -2.91 -0.02 4.16 16 35 H 0.12 4.20 8.04 -2.91 -0.02 4.18 16 36 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.10 5.35 6.26 -2.91 -0.02 5.33 16 39 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 40 H 0.12 5.57 7.33 -2.91 -0.02 5.55 16 Total: -1.00 -58.81 349.70 5.63 -53.19 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 1.05 Total: 24.85 kcal Atomic # 6 Polarization: -67.56 SS G_CDS: 3.26 Total: -64.29 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.24 Total: -41.96 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.88 Total: -10.11 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.08 Total: -2.70 kcal Total: -58.81 5.63 -53.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204785266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.889 kcal (2) G-P(sol) polarization free energy of solvation -58.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds