Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46908 * 2 1 4 4 Cl 1.80303 * 109.47211 * 240.00489 * 2 1 3 5 5 C 1.50694 * 109.47556 * 120.00135 * 2 1 3 6 6 C 1.38173 * 120.02779 * 94.97759 * 5 2 1 7 7 C 1.38246 * 120.05899 * 180.02562 * 6 5 2 8 8 C 1.38288 * 120.10873 * 0.02562 * 7 6 5 9 9 C 1.38132 * 120.05538 * 359.68785 * 8 7 6 10 10 C 1.38710 * 120.03182 * 275.00629 * 5 2 1 11 11 O 1.35895 * 120.05442 * 359.97130 * 10 5 2 12 12 C 1.42903 * 117.00256 * 174.25883 * 11 10 5 13 13 H 1.09002 * 109.46916 * 324.30788 * 12 11 10 14 14 C 1.50694 * 109.46983 * 84.30552 * 12 11 10 15 15 H 1.07993 * 120.00330 * 28.61857 * 14 12 11 16 16 C 1.37882 * 120.00024 * 208.62194 * 14 12 11 17 17 N 1.31509 * 120.00141 * 184.51218 * 16 14 12 18 18 Si 1.86806 * 119.99744 * 4.50679 * 16 14 12 19 19 H 1.48500 * 109.46895 * 271.41092 * 18 16 14 20 20 H 1.48502 * 109.46816 * 31.41031 * 18 16 14 21 21 H 1.48502 * 109.47078 * 151.40999 * 18 16 14 22 22 C 1.50698 * 109.47000 * 204.30882 * 12 11 10 23 23 C 1.38234 * 120.00035 * 320.65491 * 22 12 11 24 24 C 1.38237 * 119.99886 * 179.81264 * 23 22 12 25 25 C 1.38233 * 120.00008 * 0.40364 * 24 23 22 26 26 C 1.38238 * 120.00041 * 359.85400 * 25 24 23 27 27 C 1.38230 * 119.99959 * 359.95495 * 26 25 24 28 28 H 1.09001 * 109.46890 * 299.99363 * 1 2 3 29 29 H 1.08998 * 109.47498 * 60.00004 * 1 2 3 30 30 H 1.09007 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.96966 * 0.02562 * 6 5 2 32 32 H 1.07997 * 119.94414 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.97211 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.02407 * 180.31913 * 9 8 7 35 35 H 0.97005 * 120.00084 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.00347 * 0.02562 * 23 22 12 37 37 H 1.08000 * 120.00082 * 180.22912 * 24 23 22 38 38 H 1.07998 * 120.00137 * 179.83255 * 25 24 23 39 39 H 1.08004 * 119.99821 * 179.97438 * 26 25 24 40 40 H 1.08002 * 120.00382 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8498 -1.4722 5 6 2.0324 -0.7104 1.2304 6 6 2.3608 -2.0511 1.1690 7 6 2.8213 -2.7036 2.2975 8 6 2.9539 -2.0167 3.4904 9 6 2.6326 -0.6749 3.5554 10 6 2.1651 -0.0191 2.4256 11 8 1.8428 1.2996 2.4885 12 6 1.8831 1.9166 3.7769 13 1 1.5522 1.2033 4.5318 14 6 3.2932 2.3523 4.0812 15 1 3.9631 2.6145 3.2758 16 6 3.7281 2.4161 5.3881 17 7 4.9281 2.8804 5.6598 18 14 2.6127 1.8431 6.7727 19 1 1.7674 2.9759 7.2283 20 1 1.7438 0.7420 6.2849 21 1 3.4401 1.3560 7.9055 22 6 0.9728 3.1175 3.7874 23 6 0.9059 3.9437 2.6811 24 6 0.0680 5.0432 2.6893 25 6 -0.6967 5.3211 3.8068 26 6 -0.6258 4.4979 4.9151 27 6 0.2091 3.3962 4.9054 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2576 -2.5898 0.2387 32 1 3.0778 -3.7515 2.2473 33 1 3.3135 -2.5287 4.3707 34 1 2.7413 -0.1377 4.4860 35 1 5.2343 2.9249 6.5792 36 1 1.5056 3.7284 1.8092 37 1 0.0129 5.6866 1.8237 38 1 -1.3493 6.1816 3.8143 39 1 -1.2230 4.7153 5.7883 40 1 0.2642 2.7528 5.7711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224085303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -1.657344 kcal Electronic energy + Delta-G solvation = -24115.115308 eV Core-core repulsion = 20692.592607 eV Total energy + Delta-G solvation = -3422.522701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86872 -38.61843 -36.85177 -35.86916 -33.47848 -32.90185 -31.37576 -30.38150 -29.67020 -28.73148 -27.42310 -23.67470 -23.48191 -22.19623 -21.88223 -20.58409 -20.07574 -17.56523 -17.29137 -16.54005 -15.66370 -15.53310 -15.08328 -14.54660 -14.43756 -14.09002 -13.85847 -13.69019 -13.46824 -13.19800 -13.04017 -12.82891 -12.72575 -12.30281 -12.06586 -11.80136 -11.56377 -11.48438 -11.17609 -11.13102 -10.95036 -10.63820 -10.49724 -10.31860 -10.17067 -10.01277 -9.85055 -9.59569 -8.92472 -8.43144 -8.37274 -8.07180 -7.52482 -6.41749 -4.45046 1.66854 1.91235 1.95577 1.97291 2.45224 3.00780 3.04450 3.12726 3.95012 4.06486 4.19646 4.40235 4.77846 4.90309 5.18764 5.25984 5.38975 5.39494 5.41322 5.48611 5.55372 5.66689 5.75783 5.80328 5.84126 5.96597 6.03337 6.10462 6.17211 6.21725 6.29676 6.41418 6.52185 6.60118 6.79601 6.86438 6.96355 6.98593 7.06097 7.10792 7.22763 7.34300 7.55939 7.97992 8.24258 8.69757 9.15613 10.70040 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.005766 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.176864 B = 4855.153091 C = 6394.039142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.111 0.889 4 Cl -0.195 7.195 5 C -0.154 4.154 6 C -0.074 4.074 7 C -0.174 4.174 8 C -0.081 4.081 9 C -0.193 4.193 10 C 0.176 3.824 11 O -0.312 6.312 12 C 0.209 3.791 13 H 0.049 0.951 14 C -0.531 4.531 15 H 0.089 0.911 16 C 0.088 3.912 17 N -0.873 5.873 18 Si 0.850 3.150 19 H -0.261 1.261 20 H -0.258 1.258 21 H -0.280 1.280 22 C -0.040 4.040 23 C -0.096 4.096 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.271 0.729 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 -4.858 -5.827 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.129 0.871 4 Cl -0.168 7.168 5 C -0.155 4.155 6 C -0.092 4.092 7 C -0.192 4.192 8 C -0.099 4.099 9 C -0.211 4.211 10 C 0.129 3.871 11 O -0.225 6.225 12 C 0.154 3.846 13 H 0.066 0.934 14 C -0.568 4.568 15 H 0.107 0.893 16 C -0.118 4.118 17 N -0.508 5.508 18 Si 0.677 3.323 19 H -0.186 1.186 20 H -0.183 1.183 21 H -0.206 1.206 22 C -0.041 4.041 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.160 4.160 26 C -0.138 4.138 27 C -0.149 4.149 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.540 -4.710 -5.925 12.178 hybrid contribution -0.090 -0.169 1.222 1.237 sum -9.630 -4.879 -4.703 11.775 Atomic orbital electron populations 1.22078 0.92257 1.03015 1.03188 1.22657 0.96067 0.97331 0.82039 0.87056 1.98682 1.90565 1.82096 1.45479 1.18952 1.09550 0.94440 0.92526 1.20825 0.97103 0.92719 0.98533 1.20860 1.05368 0.99804 0.93163 1.20985 0.97437 0.93867 0.97614 1.21547 1.04347 0.95536 0.99676 1.18607 0.92221 0.83621 0.92696 1.85906 1.82093 1.19206 1.35288 1.19583 0.95588 0.88911 0.80480 0.93364 1.21207 0.94042 1.47019 0.94521 0.89341 1.24880 0.94784 0.93973 0.98175 1.69854 1.17568 1.43098 1.20322 0.87348 0.81535 0.80419 0.83044 1.18645 1.18286 1.20553 1.20160 0.92698 0.97725 0.93535 1.20895 0.97967 0.94094 0.98488 1.21071 0.97453 0.97588 0.98053 1.20922 1.01010 0.99874 0.94173 1.20918 0.99382 0.95423 0.98110 1.20896 0.97268 0.98701 0.97996 0.90282 0.91600 0.91756 0.85470 0.86577 0.86416 0.84210 0.91898 0.85994 0.86774 0.86969 0.86855 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.30 37.16 0.35 -1.53 16 2 C 0.06 0.92 3.29 -27.89 -0.09 0.83 16 3 H 0.11 1.74 7.69 -51.93 -0.40 1.34 16 4 Cl -0.19 -2.71 26.70 -51.86 -1.38 -4.09 16 5 C -0.15 -2.59 5.03 -104.47 -0.53 -3.12 16 6 C -0.07 -1.13 9.16 -39.60 -0.36 -1.50 16 7 C -0.17 -2.61 10.04 -39.56 -0.40 -3.01 16 8 C -0.08 -1.35 10.04 -39.60 -0.40 -1.75 16 9 C -0.19 -3.80 8.69 -39.43 -0.34 -4.15 16 10 C 0.18 3.45 6.56 -39.22 -0.26 3.19 16 11 O -0.31 -6.49 8.23 -19.41 -0.16 -6.65 16 12 C 0.21 4.67 1.55 -29.04 -0.04 4.62 16 13 H 0.05 1.09 3.48 -51.93 -0.18 0.91 16 14 C -0.53 -13.87 8.20 -34.44 -0.28 -14.15 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.09 2.33 5.46 -17.82 -0.10 2.24 16 17 N -0.87 -24.92 13.96 55.43 0.77 -24.15 16 18 Si 0.85 19.31 23.77 -169.99 -4.04 15.26 16 19 H -0.26 -5.77 6.68 56.52 0.38 -5.40 16 20 H -0.26 -5.45 5.79 56.52 0.33 -5.12 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.04 -0.85 4.91 -104.62 -0.51 -1.36 16 23 C -0.10 -1.83 9.36 -39.58 -0.37 -2.20 16 24 C -0.12 -2.02 10.05 -39.58 -0.40 -2.41 16 25 C -0.14 -2.21 10.05 -39.58 -0.40 -2.60 16 26 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 27 C -0.13 -2.55 8.78 -39.58 -0.35 -2.90 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.13 1.74 6.63 -52.49 -0.35 1.39 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.14 3.02 4.35 -52.49 -0.23 2.79 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.12 2.29 7.76 -52.49 -0.41 1.88 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.11 2.12 5.38 -52.49 -0.28 1.84 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -27.72 339.10 -9.47 -37.19 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.88 Total: 9.56 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -4.88 Total: -32.23 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.77 Total: -24.15 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.16 Total: -6.65 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.04 Total: 15.26 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -1.38 Total: -4.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.72 -9.47 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224085303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.531 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds