Wall clock time and date at job start Tue Mar 31 2020 11:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46908 * 2 1 4 4 Cl 1.80303 * 109.47211 * 240.00489 * 2 1 3 5 5 C 1.50694 * 109.47556 * 120.00135 * 2 1 3 6 6 C 1.38173 * 120.02779 * 94.97759 * 5 2 1 7 7 C 1.38246 * 120.05899 * 180.02562 * 6 5 2 8 8 C 1.38288 * 120.10873 * 0.02562 * 7 6 5 9 9 C 1.38132 * 120.05538 * 359.68785 * 8 7 6 10 10 C 1.38710 * 120.03182 * 275.00629 * 5 2 1 11 11 O 1.35895 * 120.05442 * 359.97130 * 10 5 2 12 12 C 1.42903 * 117.00256 * 174.25883 * 11 10 5 13 13 H 1.09002 * 109.46916 * 324.30788 * 12 11 10 14 14 C 1.50694 * 109.46983 * 84.30552 * 12 11 10 15 15 H 1.07993 * 120.00330 * 28.61857 * 14 12 11 16 16 C 1.37882 * 120.00024 * 208.62194 * 14 12 11 17 17 N 1.31509 * 120.00141 * 184.51218 * 16 14 12 18 18 Si 1.86806 * 119.99744 * 4.50679 * 16 14 12 19 19 H 1.48500 * 109.46895 * 271.41092 * 18 16 14 20 20 H 1.48502 * 109.46816 * 31.41031 * 18 16 14 21 21 H 1.48502 * 109.47078 * 151.40999 * 18 16 14 22 22 C 1.50698 * 109.47000 * 204.30882 * 12 11 10 23 23 C 1.38234 * 120.00035 * 320.65491 * 22 12 11 24 24 C 1.38237 * 119.99886 * 179.81264 * 23 22 12 25 25 C 1.38233 * 120.00008 * 0.40364 * 24 23 22 26 26 C 1.38238 * 120.00041 * 359.85400 * 25 24 23 27 27 C 1.38230 * 119.99959 * 359.95495 * 26 25 24 28 28 H 1.09001 * 109.46890 * 299.99363 * 1 2 3 29 29 H 1.08998 * 109.47498 * 60.00004 * 1 2 3 30 30 H 1.09007 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.96966 * 0.02562 * 6 5 2 32 32 H 1.07997 * 119.94414 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.97211 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.02407 * 180.31913 * 9 8 7 35 35 H 0.97005 * 120.00084 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.00347 * 0.02562 * 23 22 12 37 37 H 1.08000 * 120.00082 * 180.22912 * 24 23 22 38 38 H 1.07998 * 120.00137 * 179.83255 * 25 24 23 39 39 H 1.08004 * 119.99821 * 179.97438 * 26 25 24 40 40 H 1.08002 * 120.00382 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8498 -1.4722 5 6 2.0324 -0.7104 1.2304 6 6 2.3608 -2.0511 1.1690 7 6 2.8213 -2.7036 2.2975 8 6 2.9539 -2.0167 3.4904 9 6 2.6326 -0.6749 3.5554 10 6 2.1651 -0.0191 2.4256 11 8 1.8428 1.2996 2.4885 12 6 1.8831 1.9166 3.7769 13 1 1.5522 1.2033 4.5318 14 6 3.2932 2.3523 4.0812 15 1 3.9631 2.6145 3.2758 16 6 3.7281 2.4161 5.3881 17 7 4.9281 2.8804 5.6598 18 14 2.6127 1.8431 6.7727 19 1 1.7674 2.9759 7.2283 20 1 1.7438 0.7420 6.2849 21 1 3.4401 1.3560 7.9055 22 6 0.9728 3.1175 3.7874 23 6 0.9059 3.9437 2.6811 24 6 0.0680 5.0432 2.6893 25 6 -0.6967 5.3211 3.8068 26 6 -0.6258 4.4979 4.9151 27 6 0.2091 3.3962 4.9054 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2576 -2.5898 0.2387 32 1 3.0778 -3.7515 2.2473 33 1 3.3135 -2.5287 4.3707 34 1 2.7413 -0.1377 4.4860 35 1 5.2343 2.9249 6.5792 36 1 1.5056 3.7284 1.8092 37 1 0.0129 5.6866 1.8237 38 1 -1.3493 6.1816 3.8143 39 1 -1.2230 4.7153 5.7883 40 1 0.2642 2.7528 5.7711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224085303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:21 Heat of formation + Delta-G solvation = -14.823178 kcal Electronic energy + Delta-G solvation = -24115.686222 eV Core-core repulsion = 20692.592607 eV Total energy + Delta-G solvation = -3423.093615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32913 -39.99634 -38.28792 -37.07128 -35.18501 -34.34379 -32.95919 -31.75199 -31.00004 -30.02569 -29.15187 -25.22345 -24.88840 -23.59510 -23.25470 -21.92220 -21.54542 -19.40429 -18.90455 -17.94478 -17.04574 -16.85646 -16.71521 -16.03392 -15.78765 -15.50548 -15.13004 -15.06117 -14.98863 -14.79347 -14.52948 -14.23279 -14.17960 -13.71999 -13.41641 -13.13564 -13.03871 -12.79710 -12.62946 -12.49529 -12.38313 -12.10714 -11.93817 -11.77571 -11.55620 -11.40371 -11.36361 -11.27350 -10.92202 -9.77747 -9.75097 -9.52184 -8.97265 -8.47609 -6.55028 0.33153 0.51901 0.57429 0.59533 1.18354 1.20304 1.24719 1.28232 2.14016 2.44746 2.83679 2.84722 3.06040 3.53861 3.97515 4.01338 4.06647 4.11585 4.17319 4.19733 4.23226 4.31172 4.42151 4.51038 4.53911 4.71219 4.76998 4.79010 4.83080 4.91985 5.07913 5.10100 5.18385 5.22225 5.25828 5.48620 5.51088 5.61752 5.63651 5.67632 5.79226 5.89690 6.07905 6.19538 6.44289 6.67269 7.11635 8.68719 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.005766 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.176864 B = 4855.153091 C = 6394.039142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 H 0.095 0.905 4 Cl -0.182 7.182 5 C -0.154 4.154 6 C -0.072 4.072 7 C -0.160 4.160 8 C -0.086 4.086 9 C -0.222 4.222 10 C 0.141 3.859 11 O -0.319 6.319 12 C 0.222 3.778 13 H 0.045 0.955 14 C -0.529 4.529 15 H 0.036 0.964 16 C 0.038 3.962 17 N -0.927 5.927 18 Si 0.906 3.094 19 H -0.246 1.246 20 H -0.240 1.240 21 H -0.279 1.279 22 C -0.073 4.073 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.151 4.151 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 -5.555 -6.298 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 H 0.113 0.887 4 Cl -0.156 7.156 5 C -0.155 4.155 6 C -0.090 4.090 7 C -0.178 4.178 8 C -0.104 4.104 9 C -0.240 4.240 10 C 0.095 3.905 11 O -0.232 6.232 12 C 0.166 3.834 13 H 0.063 0.937 14 C -0.566 4.566 15 H 0.054 0.946 16 C -0.163 4.163 17 N -0.565 5.565 18 Si 0.729 3.271 19 H -0.171 1.171 20 H -0.164 1.164 21 H -0.204 1.204 22 C -0.073 4.073 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.169 4.169 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.165 0.835 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.338 -5.419 -6.419 14.927 hybrid contribution 0.779 0.017 1.179 1.413 sum -11.559 -5.403 -5.241 13.794 Atomic orbital electron populations 1.22023 0.90410 1.03847 1.03457 1.22588 0.97447 0.96315 0.81761 0.88729 1.98679 1.90586 1.81768 1.44557 1.19225 1.08856 0.95158 0.92235 1.21170 0.96098 0.92053 0.99698 1.21293 1.03129 1.01417 0.91945 1.21272 0.96977 0.92711 0.99422 1.21541 1.06461 0.97141 0.98900 1.18971 0.94186 0.83316 0.94062 1.85872 1.82721 1.20336 1.34300 1.19285 0.93513 0.89520 0.81043 0.93739 1.21237 0.95770 1.46374 0.93207 0.94600 1.25614 0.96054 0.93936 1.00669 1.70002 1.19856 1.45711 1.20928 0.86448 0.80059 0.80986 0.79591 1.17066 1.16408 1.20431 1.20137 0.94364 0.97604 0.95223 1.20962 0.99142 0.95427 0.97852 1.21444 0.96066 0.96542 0.99678 1.21431 1.00185 1.00281 0.92859 1.21343 0.98471 0.94163 0.99762 1.21057 0.98334 1.00172 0.97363 0.91550 0.89766 0.90588 0.83185 0.82716 0.84246 0.86859 0.91867 0.87245 0.83580 0.82703 0.83546 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.30 71.98 0.67 -2.74 16 2 C 0.06 1.83 3.29 29.85 0.10 1.93 16 3 H 0.09 3.09 7.69 -2.38 -0.02 3.07 16 4 Cl -0.18 -4.80 26.70 -2.72 -0.07 -4.87 16 5 C -0.15 -5.18 5.03 -19.77 -0.10 -5.28 16 6 C -0.07 -2.09 9.16 22.26 0.20 -1.88 16 7 C -0.16 -4.41 10.04 22.28 0.22 -4.19 16 8 C -0.09 -2.81 10.04 22.26 0.22 -2.58 16 9 C -0.22 -9.09 8.69 22.37 0.19 -8.89 16 10 C 0.14 5.76 6.56 22.51 0.15 5.91 16 11 O -0.32 -14.15 8.23 -92.37 -0.76 -14.91 16 12 C 0.22 10.45 1.55 29.10 0.05 10.50 16 13 H 0.05 2.11 3.48 -2.39 -0.01 2.10 16 14 C -0.53 -29.71 8.20 25.60 0.21 -29.50 16 15 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 16 C 0.04 2.13 5.46 84.66 0.46 2.60 16 17 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 18 Si 0.91 41.16 23.77 68.60 1.63 42.79 16 19 H -0.25 -10.52 6.68 99.48 0.66 -9.85 16 20 H -0.24 -10.07 5.79 99.48 0.58 -9.49 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.07 -3.12 4.91 -19.87 -0.10 -3.22 16 23 C -0.12 -4.49 9.36 22.27 0.21 -4.28 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 26 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 27 C -0.15 -5.82 8.78 22.27 0.20 -5.62 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.15 3.64 6.63 -2.91 -0.02 3.62 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.11 5.18 4.35 -2.91 -0.01 5.17 16 35 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 36 H 0.11 4.37 7.76 -2.91 -0.02 4.35 16 37 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.11 4.04 5.38 -2.91 -0.02 4.02 16 Total: -1.00 -65.69 339.10 5.33 -60.36 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.88 Total: 29.91 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 3.36 Total: -57.45 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.30 Total: -55.83 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.76 Total: -14.91 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.63 Total: 42.79 kcal Atomic # 17 Polarization: -4.80 SS G_CDS: -0.07 Total: -4.87 kcal Total: -65.69 5.33 -60.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224085303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.534 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds