Wall clock time and date at job start Tue Mar 31 2020 11:19:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53005 * 109.46762 * 2 1
4 4 O 1.42895 * 109.47291 * 120.00139 * 2 1 3
5 5 C 1.35809 * 116.99691 * 82.44631 * 4 2 1
6 6 C 1.39010 * 119.90327 * 2.02422 * 5 4 2
7 7 C 1.37724 * 120.12465 * 179.97438 * 6 5 4
8 8 C 1.39760 * 119.92096 * 0.02562 * 7 6 5
9 9 C 1.47731 * 120.10117 * 179.97438 * 8 7 6
10 10 C 1.39260 * 120.34699 * 64.72933 * 9 8 7
11 11 C 1.38007 * 119.98009 * 179.71975 * 10 9 8
12 12 C 1.38978 * 120.68610 * 0.55929 * 11 10 9
13 13 C 1.36401 * 120.70095 * 359.71458 * 12 11 10
14 14 C 1.40764 * 119.99311 * 0.02562 * 13 12 11
15 15 C 1.40830 * 120.33792 * 180.02562 * 14 13 12
16 16 H 1.07998 * 120.00314 * 149.74123 * 15 14 13
17 17 C 1.40038 * 119.99946 * 329.73970 * 15 14 13
18 18 N 1.30792 * 120.00439 * 166.32720 * 17 15 14
19 19 Si 1.86805 * 119.99809 * 346.32761 * 17 15 14
20 20 H 1.48498 * 109.47128 * 92.85691 * 19 17 15
21 21 H 1.48497 * 109.47092 * 212.85288 * 19 17 15
22 22 H 1.48500 * 109.47225 * 332.85302 * 19 17 15
23 23 C 1.39848 * 119.79543 * 0.02562 * 8 7 6
24 24 Cl 1.73605 * 120.06020 * 179.97438 * 23 8 7
25 25 C 1.37919 * 119.87772 * 359.70224 * 23 8 7
26 26 H 1.09000 * 109.46818 * 299.99703 * 1 2 3
27 27 H 1.09004 * 109.47355 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.47623 * 59.99759 * 1 2 3
29 29 H 1.09000 * 109.46818 * 240.00297 * 2 1 3
30 30 H 1.09000 * 109.47211 * 60.00538 * 3 2 1
31 31 H 1.09008 * 109.46533 * 180.02562 * 3 2 1
32 32 H 1.09001 * 109.47044 * 299.99957 * 3 2 1
33 33 H 1.08003 * 119.93612 * 0.02562 * 6 5 4
34 34 H 1.08004 * 120.04044 * 180.02562 * 7 6 5
35 35 H 1.08003 * 120.00277 * 359.97438 * 10 9 8
36 36 H 1.08000 * 119.65731 * 180.27607 * 11 10 9
37 37 H 1.08000 * 119.64854 * 179.74256 * 12 11 10
38 38 H 1.08001 * 120.00342 * 179.97438 * 13 12 11
39 39 H 0.97004 * 120.00822 * 180.02562 * 18 17 15
40 40 H 1.08005 * 119.96163 * 180.29468 * 25 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.0619 -2.0296 1.1162
6 6 1.7046 -2.6949 -0.0510
7 6 1.7597 -4.0698 -0.1074
8 6 2.1752 -4.7974 1.0112
9 6 2.2353 -6.2724 0.9552
10 6 3.1284 -6.9081 0.0963
11 6 3.1822 -8.2865 0.0543
12 6 2.3438 -9.0537 0.8543
13 6 1.4547 -8.4602 1.7016
14 6 1.3791 -7.0564 1.7717
15 6 0.4642 -6.4360 2.6443
16 1 0.6957 -5.4724 3.0735
17 6 -0.7457 -7.0686 2.9554
18 7 -1.4707 -6.6381 3.9554
19 14 -1.3245 -8.5275 1.9423
20 1 -0.8592 -9.7867 2.5771
21 1 -2.8079 -8.5259 1.8748
22 1 -0.7664 -8.4294 0.5696
23 6 2.5330 -4.1248 2.1840
24 17 3.0495 -5.0218 3.5777
25 6 2.4800 -2.7474 2.2295
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 -1.0277 0.0005
28 1 -0.3634 0.5139 -0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 1.6767 1.9564 0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9564 -0.8900
33 1 1.3839 -2.1323 -0.9154
34 1 1.4822 -4.5852 -1.0151
35 1 3.7815 -6.3225 -0.5337
36 1 3.8799 -8.7741 -0.6105
37 1 2.3972 -10.1313 0.8050
38 1 0.8083 -9.0674 2.3179
39 1 -2.3086 -7.0765 4.1712
40 1 2.7605 -2.2264 3.1330
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001242087648.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:42
Heat of formation + Delta-G solvation = -7.750192 kcal
Electronic energy + Delta-G solvation = -23688.283117 eV
Core-core repulsion = 20265.496210 eV
Total energy + Delta-G solvation = -3422.786907 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.097 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.02889 -38.34357 -36.88738 -35.53473 -33.61520 -33.26341 -31.17551 -30.51759
-30.20621 -27.83373 -27.26351 -25.09706 -23.09704 -22.61583 -21.15631 -20.79209
-19.69856 -18.14460 -17.39908 -16.28710 -15.77746 -15.43724 -15.10184 -14.64309
-14.19582 -14.04769 -13.94958 -13.53362 -13.28710 -13.10302 -12.78005 -12.64537
-12.46483 -12.30579 -12.04199 -12.01085 -11.84627 -11.38355 -11.30215 -11.10135
-10.82961 -10.70246 -10.53492 -10.27444 -10.22401 -10.00252 -9.73851 -9.48859
-9.15267 -8.33543 -7.92217 -7.63686 -7.23621 -6.92836 -4.46362 1.64839
1.78125 2.58272 2.70729 2.76853 3.10643 3.21040 3.30879 3.48723
3.96754 4.12542 4.52118 4.68062 4.82078 4.94683 5.18862 5.29068
5.38668 5.41575 5.46585 5.59752 5.60335 5.65788 5.83966 5.93022
5.97932 6.00751 6.09843 6.10927 6.28872 6.37318 6.56309 6.66010
6.71871 6.88744 6.97853 7.03051 7.19247 7.39155 7.62278 7.67964
7.76770 7.88732 8.11924 8.39904 8.67123 8.80513 10.07512
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.014767 B = 0.004634 C = 0.004326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1895.639707 B = 6040.518535 C = 6470.423443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.077 3.923
3 C -0.147 4.147
4 O -0.312 6.312
5 C 0.120 3.880
6 C -0.208 4.208
7 C -0.071 4.071
8 C -0.005 4.005
9 C -0.173 4.173
10 C -0.055 4.055
11 C -0.250 4.250
12 C -0.073 4.073
13 C -0.234 4.234
14 C 0.116 3.884
15 C -0.430 4.430
16 H 0.104 0.896
17 C 0.083 3.917
18 N -0.802 5.802
19 Si 0.910 3.090
20 H -0.271 1.271
21 H -0.294 1.294
22 H -0.243 1.243
23 C 0.013 3.987
24 Cl -0.049 7.049
25 C -0.148 4.148
26 H 0.066 0.934
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.073 0.927
30 H 0.065 0.935
31 H 0.063 0.937
32 H 0.074 0.926
33 H 0.126 0.874
34 H 0.128 0.872
35 H 0.094 0.906
36 H 0.092 0.908
37 H 0.091 0.909
38 H 0.100 0.900
39 H 0.285 0.715
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.896 9.748 -7.244 12.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.021 3.979
3 C -0.204 4.204
4 O -0.227 6.227
5 C 0.075 3.925
6 C -0.227 4.227
7 C -0.089 4.089
8 C -0.006 4.006
9 C -0.174 4.174
10 C -0.073 4.073
11 C -0.270 4.270
12 C -0.091 4.091
13 C -0.253 4.253
14 C 0.113 3.887
15 C -0.458 4.458
16 H 0.122 0.878
17 C -0.137 4.137
18 N -0.426 5.426
19 Si 0.737 3.263
20 H -0.198 1.198
21 H -0.221 1.221
22 H -0.166 1.166
23 C -0.014 4.014
24 Cl -0.019 7.019
25 C -0.168 4.168
26 H 0.085 0.915
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.091 0.909
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.092 0.908
33 H 0.144 0.856
34 H 0.146 0.854
35 H 0.112 0.888
36 H 0.111 0.889
37 H 0.109 0.891
38 H 0.118 0.882
39 H 0.095 0.905
40 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 3.756 9.851 -6.756 12.521
hybrid contribution -0.554 -0.846 -0.307 1.057
sum 3.202 9.004 -7.062 11.883
Atomic orbital electron populations
1.22386 0.95206 1.03521 1.02784 1.22372 0.94297 0.93390 0.87875
1.21832 1.01993 0.93740 1.02824 1.86051 1.81130 1.16216 1.39276
1.18639 0.97941 0.82076 0.93840 1.21118 1.08498 0.95437 0.97611
1.21007 0.97411 0.92431 0.98078 1.18527 0.97386 0.93602 0.91076
1.18345 1.05911 0.89251 1.03901 1.20606 0.96231 0.94038 0.96465
1.20222 1.06105 0.93486 1.07137 1.20375 0.95578 0.97563 0.95579
1.20748 1.04314 0.94961 1.05313 1.17571 0.91317 0.90647 0.89166
1.19708 0.99616 1.06327 1.20171 0.87838 1.26231 0.96594 0.97255
0.93573 1.69655 1.12422 1.38249 1.22250 0.86374 0.76194 0.80651
0.83059 1.19751 1.22145 1.16620 1.20777 1.00548 0.90580 0.89464
1.98366 1.88437 1.75047 1.40076 1.20010 1.06958 0.91603 0.98197
0.91516 0.91435 0.91321 0.90940 0.91549 0.91750 0.90754 0.85608
0.85418 0.88808 0.88932 0.89096 0.88241 0.90455 0.85026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.91 9.21 37.16 0.34 -1.57 16
2 C 0.08 0.86 2.87 -26.73 -0.08 0.78 16
3 C -0.15 -1.26 9.56 37.16 0.36 -0.91 16
4 O -0.31 -4.66 9.80 -19.14 -0.19 -4.84 16
5 C 0.12 2.01 6.55 -39.05 -0.26 1.75 16
6 C -0.21 -3.30 8.23 -39.48 -0.33 -3.62 16
7 C -0.07 -1.27 9.73 -39.20 -0.38 -1.65 16
8 C 0.00 -0.10 4.69 -104.85 -0.49 -0.59 16
9 C -0.17 -3.89 4.70 -104.23 -0.49 -4.38 16
10 C -0.06 -1.15 9.73 -39.29 -0.38 -1.53 16
11 C -0.25 -5.13 10.03 -39.39 -0.40 -5.53 16
12 C -0.07 -1.56 9.96 -39.97 -0.40 -1.96 16
13 C -0.23 -5.60 6.98 -39.29 -0.27 -5.87 16
14 C 0.12 2.87 4.64 -106.55 -0.49 2.38 16
15 C -0.43 -11.30 8.21 -37.93 -0.31 -11.61 16
16 H 0.10 2.84 5.26 -52.49 -0.28 2.56 16
17 C 0.08 2.15 5.46 -17.32 -0.09 2.05 16
18 N -0.80 -21.20 13.93 55.55 0.77 -20.42 16
19 Si 0.91 20.71 24.41 -169.99 -4.15 16.56 16
20 H -0.27 -6.01 6.65 56.52 0.38 -5.64 16
21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16
22 H -0.24 -5.64 6.72 56.52 0.38 -5.27 16
23 C 0.01 0.27 5.25 -39.10 -0.21 0.07 16
24 Cl -0.05 -1.01 25.55 -51.86 -1.32 -2.34 16
25 C -0.15 -2.71 9.75 -39.45 -0.38 -3.09 16
26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
27 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16
28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.07 0.75 6.09 -51.93 -0.32 0.44 16
30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16
32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.13 1.62 5.59 -52.48 -0.29 1.32 16
34 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16
35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16
36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16
37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16
38 H 0.10 2.38 4.38 -52.49 -0.23 2.15 16
39 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16
40 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16
LS Contribution 337.47 15.07 5.09 5.09
Total: -1.00 -27.78 337.47 -8.96 -36.74
By element:
Atomic # 1 Polarization: 9.41 SS G_CDS: -4.90 Total: 4.51 kcal
Atomic # 6 Polarization: -31.04 SS G_CDS: -4.26 Total: -35.30 kcal
Atomic # 7 Polarization: -21.20 SS G_CDS: 0.77 Total: -20.42 kcal
Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.84 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -4.15 Total: 16.56 kcal
Atomic # 17 Polarization: -1.01 SS G_CDS: -1.32 Total: -2.34 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -27.78 -8.96 -36.74 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242087648.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.992 kcal
(2) G-P(sol) polarization free energy of solvation -27.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds