Wall clock time and date at job start Tue Mar 31 2020 12:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39072 * 120.56172 * 181.54051 * 3 2 1 5 5 C 1.39417 * 119.79718 * 180.24467 * 4 3 2 6 6 C 1.47940 * 119.50067 * 179.74764 * 5 4 3 7 7 C 1.39673 * 120.07672 * 179.73009 * 6 5 4 8 8 C 1.37761 * 119.92126 * 179.97438 * 7 6 5 9 9 C 1.39026 * 120.07676 * 0.02562 * 8 7 6 10 10 N 1.40050 * 119.92351 * 179.97438 * 9 8 7 11 11 C 1.36151 * 125.94644 * 179.97438 * 10 9 8 12 12 C 1.35362 * 106.04814 * 179.97438 * 11 10 9 13 13 N 1.33785 * 106.53765 * 0.02562 * 12 11 10 14 14 N 1.28610 * 109.06932 * 359.97438 * 13 12 11 15 15 C 1.39024 * 120.15664 * 0.24832 * 9 8 7 16 16 C 1.37770 * 120.07880 * 359.48782 * 15 9 8 17 17 C 1.40029 * 120.99814 * 359.48071 * 5 4 3 18 18 C 1.35977 * 121.18508 * 0.24687 * 17 5 4 19 19 C 1.41060 * 120.11473 * 0.02562 * 18 17 5 20 20 C 1.40416 * 120.48521 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00253 * 150.02206 * 20 19 18 22 22 C 1.40294 * 119.99615 * 330.01567 * 20 19 18 23 23 N 1.30643 * 119.99726 * 161.91729 * 22 20 19 24 24 Si 1.86804 * 120.00521 * 341.92258 * 22 20 19 25 25 H 1.48502 * 109.46900 * 95.39477 * 24 22 20 26 26 H 1.48492 * 109.47169 * 215.39692 * 24 22 20 27 27 H 1.48505 * 109.46623 * 335.39468 * 24 22 20 28 28 H 1.08000 * 120.09945 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.04297 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.96231 * 180.02562 * 8 7 6 31 31 H 1.07994 * 126.97197 * 359.71136 * 11 10 9 32 32 H 1.07993 * 126.72801 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.96576 * 179.75009 * 15 9 8 34 34 H 1.07992 * 120.04104 * 180.25097 * 16 15 9 35 35 H 1.07998 * 119.40226 * 180.27644 * 17 5 4 36 36 H 1.08002 * 119.93603 * 180.02562 * 18 17 5 37 37 H 0.96997 * 120.00185 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 1.1980 0.0322 5 6 4.6687 1.1802 0.0265 6 6 5.4137 2.4580 0.0552 7 6 6.8104 2.4540 0.0556 8 6 7.5010 3.6458 0.0819 9 6 6.8092 4.8514 0.1085 10 7 7.5145 6.0611 0.1357 11 6 6.9647 7.3064 0.1628 12 6 8.0036 8.1738 0.1832 13 7 9.1180 7.4337 0.1674 14 7 8.7954 6.1890 0.1396 15 6 5.4190 4.8590 0.1140 16 6 4.7219 3.6711 0.0823 17 6 5.3743 -0.0290 -0.0003 18 6 4.7244 -1.2231 -0.0268 19 6 3.3143 -1.2615 -0.0280 20 6 2.6352 -2.4902 -0.0547 21 1 1.6648 -2.5810 0.4105 22 6 3.2173 -3.5998 -0.6857 23 7 2.7835 -4.8034 -0.4215 24 14 4.6126 -3.3562 -1.9037 25 1 5.9130 -3.5272 -1.2072 26 1 4.4990 -4.3586 -2.9933 27 1 4.5348 -1.9892 -2.4785 28 1 2.7450 2.1389 0.0579 29 1 7.3485 1.5178 0.0345 30 1 8.5810 3.6435 0.0817 31 1 5.9131 7.5522 0.1631 32 1 7.9445 9.2518 0.2067 33 1 4.8847 5.7973 0.1388 34 1 3.6420 3.6778 0.0825 35 1 6.4542 -0.0128 0.0004 36 1 5.2888 -2.1436 -0.0468 37 1 3.1857 -5.5706 -0.8580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242414769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:23 Heat of formation + Delta-G solvation = 173.084744 kcal Electronic energy + Delta-G solvation = -23423.117164 eV Core-core repulsion = 19939.357106 eV Total energy + Delta-G solvation = -3483.760059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.46636 -39.54629 -37.98880 -35.52273 -34.92459 -34.04105 -31.79983 -31.66958 -30.96926 -30.23386 -29.08437 -25.99370 -24.11323 -23.66392 -22.63801 -21.81905 -21.18975 -20.71817 -18.78669 -18.01450 -17.83081 -16.51875 -15.94202 -15.58971 -15.35588 -15.09043 -14.73394 -14.38125 -14.10724 -13.82183 -13.45968 -13.32869 -13.12667 -13.04689 -12.87375 -12.32990 -12.08195 -12.03619 -11.81151 -11.65479 -11.49123 -11.25609 -11.21967 -11.08583 -10.80365 -10.52845 -10.41595 -10.09471 -9.65186 -9.59029 -9.09601 -8.87188 -8.21956 -7.62156 -7.56543 -5.07444 0.51130 1.34253 1.66318 1.85288 2.25567 2.36949 2.45866 2.75638 2.87751 2.96084 3.49470 3.59224 3.62985 4.05302 4.17896 4.26837 4.48124 4.75683 4.86048 4.94043 4.99569 5.00720 5.12124 5.23812 5.29791 5.44648 5.49327 5.65598 5.77888 5.93692 5.96623 6.11262 6.20382 6.24602 6.33799 6.48581 6.54447 6.57740 6.82605 6.88714 7.10191 7.18087 7.35340 7.45239 7.65990 7.98169 8.07465 8.35531 8.51934 9.34742 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002851 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.626410 B = 9818.820219 C =10857.984893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.293 3.707 3 C -0.167 4.167 4 C 0.016 3.984 5 C -0.221 4.221 6 C 0.041 3.959 7 C -0.131 4.131 8 C -0.080 4.080 9 C 0.061 3.939 10 N -0.223 5.223 11 C -0.055 4.055 12 C -0.051 4.051 13 N -0.275 5.275 14 N -0.086 5.086 15 C -0.096 4.096 16 C -0.131 4.131 17 C -0.024 4.024 18 C -0.233 4.233 19 C 0.124 3.876 20 C -0.384 4.384 21 H 0.102 0.898 22 C 0.076 3.924 23 N -0.755 5.755 24 Si 0.919 3.081 25 H -0.259 1.259 26 H -0.282 1.282 27 H -0.234 1.234 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.415 12.503 -0.704 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.018 4.018 3 C -0.173 4.173 4 C -0.005 4.005 5 C -0.223 4.223 6 C 0.041 3.959 7 C -0.149 4.149 8 C -0.100 4.100 9 C -0.030 4.030 10 N -0.010 5.010 11 C -0.204 4.204 12 C -0.208 4.208 13 N -0.141 5.141 14 N -0.064 5.064 15 C -0.117 4.117 16 C -0.149 4.149 17 C -0.043 4.043 18 C -0.252 4.252 19 C 0.117 3.883 20 C -0.408 4.408 21 H 0.120 0.880 22 C -0.151 4.151 23 N -0.374 5.374 24 Si 0.743 3.257 25 H -0.185 1.185 26 H -0.208 1.208 27 H -0.156 1.156 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.208 0.792 32 H 0.208 0.792 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.978 11.485 -0.716 13.458 hybrid contribution -0.237 0.378 -0.368 0.578 sum 6.741 11.863 -1.084 13.688 Atomic orbital electron populations 1.81073 1.12552 1.09248 1.13904 1.25620 0.92563 0.91904 0.91689 1.16666 0.83461 0.93655 1.23478 1.20734 0.92772 0.95367 0.91644 1.17661 0.91858 0.90712 1.22047 1.19078 0.92521 0.92898 0.91436 1.21136 0.93568 0.97427 1.02786 1.20785 1.00540 0.90092 0.98541 1.17553 0.90710 0.82080 1.12630 1.44703 1.05693 1.06239 1.44325 1.23797 1.02285 0.83591 1.10753 1.23586 0.88219 1.01477 1.07472 1.75091 1.25977 0.96248 1.16743 1.78329 0.93690 1.14481 1.19924 1.20670 0.90633 0.99382 1.01001 1.21057 1.00272 0.90603 1.02996 1.20466 0.98213 0.91769 0.93857 1.20632 0.93739 0.97043 1.13781 1.18518 0.91159 0.90814 0.87773 1.19884 1.04829 0.91352 1.24768 0.88010 1.26601 0.97734 0.93885 0.96922 1.69572 1.35689 1.00080 1.32028 0.86151 0.79270 0.81187 0.79135 1.18466 1.20821 1.15599 0.87179 0.84629 0.84697 0.79222 0.79169 0.85520 0.84701 0.87611 0.87020 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.83 18.54 41.84 0.78 -10.05 16 2 C 0.29 6.15 14.36 -22.47 -0.32 5.83 16 3 C -0.17 -3.30 5.93 -104.27 -0.62 -3.92 16 4 C 0.02 0.27 9.12 -38.83 -0.35 -0.09 16 5 C -0.22 -3.57 5.88 -104.81 -0.62 -4.19 16 6 C 0.04 0.58 5.88 -104.85 -0.62 -0.04 16 7 C -0.13 -1.68 9.41 -39.22 -0.37 -2.05 16 8 C -0.08 -1.02 9.60 -39.46 -0.38 -1.40 16 9 C 0.06 0.77 6.68 -83.52 -0.56 0.21 16 10 N -0.22 -2.88 3.55 -10.42 -0.04 -2.91 16 11 C -0.06 -0.55 10.91 -16.66 -0.18 -0.73 16 12 C -0.05 -0.53 12.05 -17.73 -0.21 -0.74 16 13 N -0.28 -3.90 12.39 30.24 0.37 -3.53 16 14 N -0.09 -1.28 12.40 60.35 0.75 -0.53 16 15 C -0.10 -1.07 9.44 -39.46 -0.37 -1.44 16 16 C -0.13 -1.59 9.41 -39.22 -0.37 -1.96 16 17 C -0.02 -0.40 9.30 -39.72 -0.37 -0.77 16 18 C -0.23 -4.39 7.11 -39.32 -0.28 -4.67 16 19 C 0.12 2.58 5.26 -104.61 -0.55 2.03 16 20 C -0.38 -8.73 9.01 -37.99 -0.34 -9.07 16 21 H 0.10 2.54 7.65 -52.49 -0.40 2.14 16 22 C 0.08 1.64 5.41 -17.28 -0.09 1.54 16 23 N -0.75 -16.80 13.92 55.57 0.77 -16.02 16 24 Si 0.92 16.81 24.52 -169.99 -4.17 12.64 16 25 H -0.26 -4.46 6.71 56.52 0.38 -4.08 16 26 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 27 H -0.23 -4.35 6.86 56.52 0.39 -3.96 16 28 H 0.11 1.57 6.13 -52.49 -0.32 1.25 16 29 H 0.14 1.55 6.12 -52.48 -0.32 1.23 16 30 H 0.14 1.64 7.68 -52.48 -0.40 1.24 16 31 H 0.19 1.13 7.09 -52.49 -0.37 0.76 16 32 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.03 6.75 -52.49 -0.35 0.67 16 34 H 0.14 1.45 6.14 -52.49 -0.32 1.13 16 35 H 0.11 1.46 6.08 -52.49 -0.32 1.14 16 36 H 0.11 2.04 4.75 -52.49 -0.25 1.80 16 37 H 0.30 5.88 8.29 -40.82 -0.34 5.54 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -26.08 325.49 -5.89 -31.98 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -2.66 Total: 4.99 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -6.61 Total: -21.46 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 2.63 Total: -33.05 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -4.17 Total: 12.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.08 -5.89 -31.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242414769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.060 kcal (2) G-P(sol) polarization free energy of solvation -26.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds