Wall clock time and date at job start Tue Mar 31 2020 12:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39072 * 120.56172 * 181.54051 * 3 2 1 5 5 C 1.39417 * 119.79718 * 180.24467 * 4 3 2 6 6 C 1.47940 * 119.50067 * 179.74764 * 5 4 3 7 7 C 1.39673 * 120.07672 * 179.73009 * 6 5 4 8 8 C 1.37761 * 119.92126 * 179.97438 * 7 6 5 9 9 C 1.39026 * 120.07676 * 0.02562 * 8 7 6 10 10 N 1.40050 * 119.92351 * 179.97438 * 9 8 7 11 11 C 1.36151 * 125.94644 * 179.97438 * 10 9 8 12 12 C 1.35362 * 106.04814 * 179.97438 * 11 10 9 13 13 N 1.33785 * 106.53765 * 0.02562 * 12 11 10 14 14 N 1.28610 * 109.06932 * 359.97438 * 13 12 11 15 15 C 1.39024 * 120.15664 * 0.24832 * 9 8 7 16 16 C 1.37770 * 120.07880 * 359.48782 * 15 9 8 17 17 C 1.40029 * 120.99814 * 359.48071 * 5 4 3 18 18 C 1.35977 * 121.18508 * 0.24687 * 17 5 4 19 19 C 1.41060 * 120.11473 * 0.02562 * 18 17 5 20 20 C 1.40416 * 120.48521 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00253 * 150.02206 * 20 19 18 22 22 C 1.40294 * 119.99615 * 330.01567 * 20 19 18 23 23 N 1.30643 * 119.99726 * 161.91729 * 22 20 19 24 24 Si 1.86804 * 120.00521 * 341.92258 * 22 20 19 25 25 H 1.48502 * 109.46900 * 95.39477 * 24 22 20 26 26 H 1.48492 * 109.47169 * 215.39692 * 24 22 20 27 27 H 1.48505 * 109.46623 * 335.39468 * 24 22 20 28 28 H 1.08000 * 120.09945 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.04297 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.96231 * 180.02562 * 8 7 6 31 31 H 1.07994 * 126.97197 * 359.71136 * 11 10 9 32 32 H 1.07993 * 126.72801 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.96576 * 179.75009 * 15 9 8 34 34 H 1.07992 * 120.04104 * 180.25097 * 16 15 9 35 35 H 1.07998 * 119.40226 * 180.27644 * 17 5 4 36 36 H 1.08002 * 119.93603 * 180.02562 * 18 17 5 37 37 H 0.96997 * 120.00185 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 1.1980 0.0322 5 6 4.6687 1.1802 0.0265 6 6 5.4137 2.4580 0.0552 7 6 6.8104 2.4540 0.0556 8 6 7.5010 3.6458 0.0819 9 6 6.8092 4.8514 0.1085 10 7 7.5145 6.0611 0.1357 11 6 6.9647 7.3064 0.1628 12 6 8.0036 8.1738 0.1832 13 7 9.1180 7.4337 0.1674 14 7 8.7954 6.1890 0.1396 15 6 5.4190 4.8590 0.1140 16 6 4.7219 3.6711 0.0823 17 6 5.3743 -0.0290 -0.0003 18 6 4.7244 -1.2231 -0.0268 19 6 3.3143 -1.2615 -0.0280 20 6 2.6352 -2.4902 -0.0547 21 1 1.6648 -2.5810 0.4105 22 6 3.2173 -3.5998 -0.6857 23 7 2.7835 -4.8034 -0.4215 24 14 4.6126 -3.3562 -1.9037 25 1 5.9130 -3.5272 -1.2072 26 1 4.4990 -4.3586 -2.9933 27 1 4.5348 -1.9892 -2.4785 28 1 2.7450 2.1389 0.0579 29 1 7.3485 1.5178 0.0345 30 1 8.5810 3.6435 0.0817 31 1 5.9131 7.5522 0.1631 32 1 7.9445 9.2518 0.2067 33 1 4.8847 5.7973 0.1388 34 1 3.6420 3.6778 0.0825 35 1 6.4542 -0.0128 0.0004 36 1 5.2888 -2.1436 -0.0468 37 1 3.1857 -5.5706 -0.8580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242414769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:22 Heat of formation + Delta-G solvation = 160.113091 kcal Electronic energy + Delta-G solvation = -23423.679657 eV Core-core repulsion = 19939.357106 eV Total energy + Delta-G solvation = -3484.322552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.35677 -40.65865 -39.32088 -37.11849 -36.22647 -35.30428 -32.98644 -32.76150 -32.09235 -31.39585 -30.28852 -27.31645 -25.22895 -24.72483 -23.82828 -23.11115 -22.22466 -21.83054 -19.78362 -19.43983 -19.17285 -17.43689 -17.35589 -16.65646 -16.46006 -16.27253 -15.78206 -15.60667 -15.20382 -14.94112 -14.76663 -14.57872 -14.49972 -14.23240 -14.11624 -13.78850 -13.59405 -13.43595 -12.99669 -12.88866 -12.78624 -12.60578 -12.37917 -12.04175 -12.00774 -11.85434 -11.73916 -11.50516 -11.05949 -10.42758 -10.11416 -10.02031 -9.64723 -9.15319 -8.86289 -6.67063 -0.49340 0.25968 0.40350 0.64537 1.18320 1.30526 1.38660 1.44532 1.53833 1.58123 1.96748 2.04621 2.24101 2.53432 2.90324 3.42903 3.48133 3.50601 3.67636 3.87548 3.96649 4.07171 4.17865 4.24028 4.33934 4.35867 4.42270 4.63490 4.67662 4.71043 4.89017 5.01926 5.06967 5.12284 5.22813 5.30431 5.42431 5.44177 5.59306 5.66605 5.72250 5.93109 5.98215 6.03502 6.13904 6.42970 6.53642 6.87951 7.45199 7.89374 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002851 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.626410 B = 9818.820219 C =10857.984893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.301 3.699 3 C -0.187 4.187 4 C 0.016 3.984 5 C -0.194 4.194 6 C 0.014 3.986 7 C -0.120 4.120 8 C -0.094 4.094 9 C 0.066 3.934 10 N -0.235 5.235 11 C -0.043 4.043 12 C -0.054 4.054 13 N -0.306 5.306 14 N -0.126 5.126 15 C -0.091 4.091 16 C -0.120 4.120 17 C -0.021 4.021 18 C -0.244 4.244 19 C 0.122 3.878 20 C -0.438 4.438 21 H 0.056 0.944 22 C 0.047 3.953 23 N -0.808 5.808 24 Si 0.966 3.034 25 H -0.237 1.237 26 H -0.278 1.278 27 H -0.238 1.238 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.235 0.765 32 H 0.227 0.773 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 16.886 -1.099 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.009 4.009 3 C -0.192 4.192 4 C -0.005 4.005 5 C -0.196 4.196 6 C 0.013 3.987 7 C -0.139 4.139 8 C -0.114 4.114 9 C -0.024 4.024 10 N -0.022 5.022 11 C -0.192 4.192 12 C -0.210 4.210 13 N -0.171 5.171 14 N -0.104 5.104 15 C -0.111 4.111 16 C -0.139 4.139 17 C -0.040 4.040 18 C -0.263 4.263 19 C 0.116 3.884 20 C -0.465 4.465 21 H 0.075 0.925 22 C -0.175 4.175 23 N -0.430 5.430 24 Si 0.786 3.214 25 H -0.161 1.161 26 H -0.204 1.204 27 H -0.161 1.161 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.251 0.749 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.040 15.878 -1.098 18.304 hybrid contribution -0.662 -0.344 -0.166 0.765 sum 8.378 15.534 -1.265 17.694 Atomic orbital electron populations 1.81046 1.13410 1.10257 1.15261 1.25956 0.92963 0.91018 0.90938 1.16915 0.82877 0.94601 1.24832 1.21020 0.93230 0.95414 0.90810 1.17998 0.91714 0.91826 1.18032 1.19024 0.92901 0.92442 0.94316 1.21271 0.93240 0.98115 1.01248 1.20881 1.00811 0.90435 0.99285 1.17877 0.91530 0.82155 1.10879 1.44868 1.05522 1.07147 1.44683 1.24603 1.04214 0.82144 1.08198 1.24315 0.87234 1.03225 1.06263 1.75050 1.27951 0.96668 1.17460 1.78318 0.94894 1.15038 1.22146 1.20995 0.89870 1.00617 0.99602 1.21316 1.01262 0.90236 1.01059 1.20880 1.00133 0.90976 0.91983 1.20744 0.92745 0.98388 1.14438 1.18685 0.92327 0.90432 0.86964 1.19658 1.04156 0.93515 1.29160 0.92542 1.27250 0.99436 0.93216 0.97551 1.69604 1.38181 1.00852 1.34326 0.85469 0.77794 0.80657 0.77446 1.16138 1.20441 1.16072 0.84156 0.83336 0.84718 0.74876 0.75617 0.81783 0.82942 0.84156 0.86609 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.86 18.54 19.00 0.35 -23.50 16 2 C 0.30 13.01 14.36 88.33 1.27 14.27 16 3 C -0.19 -7.38 5.93 -19.64 -0.12 -7.49 16 4 C 0.02 0.49 9.12 22.75 0.21 0.70 16 5 C -0.19 -5.59 5.88 -19.99 -0.12 -5.70 16 6 C 0.01 0.33 5.88 -20.01 -0.12 0.21 16 7 C -0.12 -2.61 9.41 22.50 0.21 -2.40 16 8 C -0.09 -2.08 9.60 22.35 0.21 -1.86 16 9 C 0.07 1.39 6.68 38.21 0.26 1.64 16 10 N -0.23 -5.17 3.55 -186.88 -0.66 -5.83 16 11 C -0.04 -0.64 10.91 83.36 0.91 0.27 16 12 C -0.05 -0.90 12.05 83.73 1.01 0.11 16 13 N -0.31 -7.98 12.39 -58.25 -0.72 -8.70 16 14 N -0.13 -3.48 12.40 37.02 0.46 -3.02 16 15 C -0.09 -1.48 9.44 22.35 0.21 -1.27 16 16 C -0.12 -2.29 9.41 22.51 0.21 -2.08 16 17 C -0.02 -0.64 9.30 22.18 0.21 -0.43 16 18 C -0.24 -8.96 7.11 22.44 0.16 -8.80 16 19 C 0.12 5.20 5.26 -19.86 -0.10 5.10 16 20 C -0.44 -21.54 9.01 23.30 0.21 -21.33 16 21 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 22 C 0.05 2.15 5.41 85.37 0.46 2.62 16 23 N -0.81 -38.78 13.92 21.89 0.30 -38.48 16 24 Si 0.97 34.92 24.52 68.60 1.68 36.60 16 25 H -0.24 -7.62 6.71 99.48 0.67 -6.95 16 26 H -0.28 -9.72 7.11 99.48 0.71 -9.01 16 27 H -0.24 -8.60 6.86 99.48 0.68 -7.92 16 28 H 0.14 3.46 6.13 -2.91 -0.02 3.44 16 29 H 0.15 2.75 6.12 -2.91 -0.02 2.73 16 30 H 0.13 2.98 7.68 -2.91 -0.02 2.95 16 31 H 0.23 1.10 7.09 -2.91 -0.02 1.08 16 32 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.45 6.75 -2.91 -0.02 1.43 16 34 H 0.15 2.38 6.14 -2.91 -0.02 2.37 16 35 H 0.14 3.24 6.08 -2.91 -0.02 3.23 16 36 H 0.12 4.12 4.75 -2.91 -0.01 4.11 16 37 H 0.31 12.91 8.29 -92.71 -0.77 12.14 16 Total: -1.00 -62.49 325.49 7.59 -54.91 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.10 Total: 14.46 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 5.08 Total: -26.44 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -0.27 Total: -79.53 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 1.68 Total: 36.60 kcal Total: -62.49 7.59 -54.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242414769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.020 kcal (2) G-P(sol) polarization free energy of solvation -62.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds