Wall clock time and date at job start Tue Mar 31 2020 11:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45206 * 109.47476 * 2 1 4 4 C 1.34701 * 117.00512 * 179.97438 * 3 2 1 5 5 O 1.21453 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.47900 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.39511 * 119.59560 * 180.02562 * 6 4 3 8 8 C 1.38267 * 119.18307 * 179.70046 * 7 6 4 9 9 C 1.39791 * 118.38422 * 0.54308 * 8 7 6 10 10 C 1.48239 * 120.43706 * 179.73255 * 9 8 7 11 11 C 1.39115 * 120.42631 * 129.72229 * 10 9 8 12 12 C 1.40927 * 118.11766 * 180.02562 * 11 10 9 13 13 C 1.41379 * 120.57058 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00463 * 155.74537 * 13 12 11 15 15 C 1.39894 * 120.00091 * 335.75144 * 13 12 11 16 16 N 1.30862 * 120.00201 * 343.49416 * 15 13 12 17 17 Si 1.86804 * 120.00149 * 163.50002 * 15 13 12 18 18 H 1.48504 * 109.47298 * 90.00007 * 17 15 13 19 19 H 1.48508 * 109.47092 * 209.99698 * 17 15 13 20 20 H 1.48497 * 109.47049 * 329.99667 * 17 15 13 21 21 C 1.40821 * 118.86401 * 0.02562 * 12 11 10 22 22 N 1.31499 * 120.71323 * 359.97438 * 21 12 11 23 23 C 1.32164 * 122.09301 * 0.02562 * 22 21 12 24 24 F 1.35096 * 119.46853 * 179.97438 * 23 22 21 25 25 C 1.39752 * 119.12218 * 359.45881 * 9 8 7 26 26 N 1.31300 * 120.73812 * 0.27713 * 25 9 8 27 27 H 1.09005 * 109.47251 * 300.00219 * 1 2 3 28 28 H 1.09005 * 109.46798 * 59.99754 * 1 2 3 29 29 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47181 * 240.00307 * 2 1 3 31 31 H 1.08999 * 109.47547 * 119.99820 * 2 1 3 32 32 H 1.07996 * 120.40693 * 359.96219 * 7 6 4 33 33 H 1.07992 * 120.80810 * 180.29731 * 8 7 6 34 34 H 1.07995 * 120.94139 * 0.04592 * 11 10 9 35 35 H 0.97001 * 120.00630 * 179.97438 * 16 15 13 36 36 H 1.07991 * 119.64061 * 179.72383 * 21 12 11 37 37 H 1.08008 * 119.63505 * 180.29710 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0893 0.5823 0.0005 6 6 3.9148 2.9122 0.0000 7 6 5.2991 3.0852 0.0000 8 6 5.8184 4.3667 -0.0068 9 6 4.9282 5.4445 -0.0018 10 6 5.4354 6.8374 -0.0028 11 6 4.9520 7.7625 -0.9224 12 6 5.4685 9.0731 -0.8802 13 6 5.0144 10.0546 -1.7909 14 1 5.0891 11.1019 -1.5379 15 6 4.4682 9.6692 -3.0198 16 7 4.6634 8.4565 -3.4712 17 14 3.4603 10.8858 -4.0166 18 1 4.3557 11.6377 -4.9321 19 1 2.4430 10.1518 -4.8115 20 1 2.7808 11.8350 -3.0987 21 6 6.4454 9.3880 0.0839 22 7 6.8701 8.4773 0.9320 23 6 6.4087 7.2388 0.9219 24 9 6.8830 6.3456 1.8175 25 6 3.5538 5.1914 -0.0017 26 7 3.0981 3.9600 -0.0008 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.9570 2.2288 0.0010 33 1 6.8857 4.5309 -0.0118 34 1 4.2019 7.4844 -1.6479 35 1 4.2844 8.1892 -4.3231 36 1 6.8530 10.3872 0.1245 37 1 2.8585 6.0180 -0.0028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245256668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:56 Heat of formation + Delta-G solvation = -74.457201 kcal Electronic energy + Delta-G solvation = -24788.034525 eV Core-core repulsion = 20830.478266 eV Total energy + Delta-G solvation = -3957.556259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.76126 -40.72721 -39.57583 -38.32110 -36.64472 -34.35518 -33.46111 -31.97749 -31.81788 -30.56207 -29.22794 -25.71742 -25.24445 -23.62718 -23.21684 -21.95531 -21.64302 -20.78171 -18.24655 -17.77185 -17.15048 -16.80333 -16.64304 -16.24773 -15.78074 -15.59140 -14.94657 -14.83417 -14.48721 -14.47223 -13.70963 -13.43444 -13.38217 -13.14614 -12.89501 -12.71073 -12.51351 -12.28677 -12.06750 -11.95229 -11.87089 -11.70777 -11.48384 -11.34684 -10.82885 -10.78235 -10.63796 -10.37148 -9.84487 -9.64076 -9.57808 -9.28960 -8.58894 -8.31143 -7.74784 -7.16318 -4.77874 0.52944 1.39406 2.04964 2.44086 2.51555 2.61952 2.88489 2.89816 2.95887 3.64859 3.94481 4.19084 4.21791 4.75382 4.77094 4.84213 4.85390 5.00329 5.05913 5.08452 5.11249 5.21359 5.39696 5.53414 5.59342 5.77452 5.79419 5.93197 6.07731 6.27479 6.31542 6.33630 6.56085 6.67690 6.77311 6.78555 7.22939 7.43408 7.54423 7.58919 7.98108 8.04887 8.29284 8.33307 9.04421 9.75240 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003533 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.264677 B = 7924.021316 C = 9542.651680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.334 6.334 4 C 0.531 3.469 5 O -0.508 6.508 6 C 0.063 3.937 7 C -0.098 4.098 8 C -0.074 4.074 9 C -0.019 4.019 10 C -0.112 4.112 11 C -0.090 4.090 12 C 0.054 3.946 13 C -0.434 4.434 14 H 0.090 0.910 15 C 0.072 3.928 16 N -0.782 5.782 17 Si 0.917 3.083 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 C 0.017 3.983 22 N -0.486 5.486 23 C 0.166 3.834 24 F -0.144 7.144 25 C 0.107 3.893 26 N -0.432 5.432 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.289 0.711 36 H 0.141 0.859 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -9.169 1.157 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.249 6.249 4 C 0.375 3.625 5 O -0.396 6.396 6 C -0.073 4.073 7 C -0.118 4.118 8 C -0.100 4.100 9 C -0.022 4.022 10 C -0.117 4.117 11 C -0.115 4.115 12 C 0.049 3.951 13 C -0.463 4.463 14 H 0.109 0.891 15 C -0.148 4.148 16 N -0.406 5.406 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.180 1.180 21 C -0.145 4.145 22 N -0.198 5.198 23 C 0.012 3.988 24 F -0.124 7.124 25 C -0.055 4.055 26 N -0.143 5.143 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.184 -9.699 1.591 11.612 hybrid contribution 0.088 0.101 -1.038 1.046 sum -6.095 -9.598 0.553 11.384 Atomic orbital electron populations 1.21791 0.92500 1.02750 1.03830 1.23075 0.95576 0.80345 1.02517 1.86704 1.23195 1.31671 1.83339 1.20801 0.80817 0.88614 0.72263 1.90824 1.60709 1.41584 1.46462 1.19865 0.90366 0.90401 1.06630 1.21924 0.94271 0.98613 0.97035 1.21699 1.01069 0.90782 0.96417 1.20141 0.94325 0.93856 0.93879 1.18992 1.00663 0.92278 0.99749 1.21775 0.99977 0.92537 0.97241 1.18481 0.90695 0.93040 0.92892 1.19602 1.32968 0.94908 0.98830 0.89145 1.26050 0.94455 0.96226 0.98094 1.69743 1.33059 1.18930 1.18823 0.86141 0.79720 0.80583 0.79542 1.19095 1.19735 1.18023 1.22367 0.98564 0.97076 0.96477 1.66305 1.27262 1.00714 1.25470 1.17458 1.00712 0.86451 0.94186 1.91412 1.88388 1.65482 1.67135 1.22996 0.93120 0.93274 0.96064 1.67557 1.39017 0.98950 1.08765 0.91339 0.91322 0.90332 0.91211 0.91222 0.83468 0.83664 0.84027 0.89949 0.84145 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.15 0.38 -0.82 16 2 C 0.06 0.62 6.19 37.15 0.23 0.85 16 3 O -0.33 -4.84 10.03 -40.49 -0.41 -5.24 16 4 C 0.53 8.44 7.94 34.69 0.28 8.71 16 5 O -0.51 -8.43 16.10 -19.23 -0.31 -8.73 16 6 C 0.06 1.05 6.75 -83.00 -0.56 0.49 16 7 C -0.10 -1.52 9.62 -39.10 -0.38 -1.90 16 8 C -0.07 -1.25 9.01 -38.99 -0.35 -1.60 16 9 C -0.02 -0.36 5.34 -104.64 -0.56 -0.91 16 10 C -0.11 -2.38 5.50 -104.75 -0.58 -2.96 16 11 C -0.09 -2.02 8.30 -38.24 -0.32 -2.34 16 12 C 0.05 1.24 5.59 -106.71 -0.60 0.65 16 13 C -0.43 -9.75 9.08 -37.77 -0.34 -10.09 16 14 H 0.09 1.90 7.90 -52.48 -0.41 1.49 16 15 C 0.07 1.55 5.19 -17.35 -0.09 1.46 16 16 N -0.78 -17.49 10.90 55.54 0.61 -16.89 16 17 Si 0.92 16.14 29.59 -169.99 -5.03 11.11 16 18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 19 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 20 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 21 C 0.02 0.38 10.96 -16.72 -0.18 0.20 16 22 N -0.49 -11.36 10.33 -12.57 -0.13 -11.49 16 23 C 0.17 3.74 8.32 -16.70 -0.14 3.60 16 24 F -0.14 -3.12 15.98 2.25 0.04 -3.08 16 25 C 0.11 1.86 10.70 -17.21 -0.18 1.67 16 26 N -0.43 -7.53 10.10 -9.55 -0.10 -7.63 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.15 1.98 7.63 -52.49 -0.40 1.58 16 33 H 0.15 2.30 7.87 -52.49 -0.41 1.89 16 34 H 0.14 3.20 6.20 -52.49 -0.33 2.88 16 35 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 36 H 0.14 2.83 8.06 -52.49 -0.42 2.40 16 37 H 0.17 2.67 8.05 -52.48 -0.42 2.24 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -26.44 337.82 -7.27 -33.71 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.65 Total: 6.14 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.39 Total: -2.99 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.38 Total: -36.00 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.72 Total: -13.98 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.44 -7.27 -33.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245256668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.749 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds