Wall clock time and date at job start Tue Mar 31 2020 11:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45206 * 109.47476 * 2 1 4 4 C 1.34701 * 117.00512 * 179.97438 * 3 2 1 5 5 O 1.21453 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.47900 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.39511 * 119.59560 * 180.02562 * 6 4 3 8 8 C 1.38267 * 119.18307 * 179.70046 * 7 6 4 9 9 C 1.39791 * 118.38422 * 0.54308 * 8 7 6 10 10 C 1.48239 * 120.43706 * 179.73255 * 9 8 7 11 11 C 1.39115 * 120.42631 * 129.72229 * 10 9 8 12 12 C 1.40927 * 118.11766 * 180.02562 * 11 10 9 13 13 C 1.41379 * 120.57058 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00463 * 155.74537 * 13 12 11 15 15 C 1.39894 * 120.00091 * 335.75144 * 13 12 11 16 16 N 1.30862 * 120.00201 * 343.49416 * 15 13 12 17 17 Si 1.86804 * 120.00149 * 163.50002 * 15 13 12 18 18 H 1.48504 * 109.47298 * 90.00007 * 17 15 13 19 19 H 1.48508 * 109.47092 * 209.99698 * 17 15 13 20 20 H 1.48497 * 109.47049 * 329.99667 * 17 15 13 21 21 C 1.40821 * 118.86401 * 0.02562 * 12 11 10 22 22 N 1.31499 * 120.71323 * 359.97438 * 21 12 11 23 23 C 1.32164 * 122.09301 * 0.02562 * 22 21 12 24 24 F 1.35096 * 119.46853 * 179.97438 * 23 22 21 25 25 C 1.39752 * 119.12218 * 359.45881 * 9 8 7 26 26 N 1.31300 * 120.73812 * 0.27713 * 25 9 8 27 27 H 1.09005 * 109.47251 * 300.00219 * 1 2 3 28 28 H 1.09005 * 109.46798 * 59.99754 * 1 2 3 29 29 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47181 * 240.00307 * 2 1 3 31 31 H 1.08999 * 109.47547 * 119.99820 * 2 1 3 32 32 H 1.07996 * 120.40693 * 359.96219 * 7 6 4 33 33 H 1.07992 * 120.80810 * 180.29731 * 8 7 6 34 34 H 1.07995 * 120.94139 * 0.04592 * 11 10 9 35 35 H 0.97001 * 120.00630 * 179.97438 * 16 15 13 36 36 H 1.07991 * 119.64061 * 179.72383 * 21 12 11 37 37 H 1.08008 * 119.63505 * 180.29710 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0893 0.5823 0.0005 6 6 3.9148 2.9122 0.0000 7 6 5.2991 3.0852 0.0000 8 6 5.8184 4.3667 -0.0068 9 6 4.9282 5.4445 -0.0018 10 6 5.4354 6.8374 -0.0028 11 6 4.9520 7.7625 -0.9224 12 6 5.4685 9.0731 -0.8802 13 6 5.0144 10.0546 -1.7909 14 1 5.0891 11.1019 -1.5379 15 6 4.4682 9.6692 -3.0198 16 7 4.6634 8.4565 -3.4712 17 14 3.4603 10.8858 -4.0166 18 1 4.3557 11.6377 -4.9321 19 1 2.4430 10.1518 -4.8115 20 1 2.7808 11.8350 -3.0987 21 6 6.4454 9.3880 0.0839 22 7 6.8701 8.4773 0.9320 23 6 6.4087 7.2388 0.9219 24 9 6.8830 6.3456 1.8175 25 6 3.5538 5.1914 -0.0017 26 7 3.0981 3.9600 -0.0008 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.9570 2.2288 0.0010 33 1 6.8857 4.5309 -0.0118 34 1 4.2019 7.4844 -1.6479 35 1 4.2844 8.1892 -4.3231 36 1 6.8530 10.3872 0.1245 37 1 2.8585 6.0180 -0.0028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245256668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:55 Heat of formation + Delta-G solvation = -86.999562 kcal Electronic energy + Delta-G solvation = -24788.578402 eV Core-core repulsion = 20830.478266 eV Total energy + Delta-G solvation = -3958.100136 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.47541 -41.98496 -40.90286 -39.96033 -37.79539 -36.03844 -34.93991 -33.33533 -32.67372 -32.23735 -30.72138 -27.42778 -26.56473 -25.04222 -24.23889 -23.56035 -23.00499 -22.17534 -19.46953 -19.41159 -18.57913 -18.34069 -17.83031 -17.70973 -17.26723 -17.08171 -16.51635 -16.42351 -15.79203 -15.53142 -15.14393 -14.75162 -14.62486 -14.43659 -14.23374 -14.14662 -13.90113 -13.67139 -13.61991 -13.35600 -13.09629 -12.97379 -12.83198 -12.52677 -12.32390 -12.02535 -11.91197 -11.56462 -11.28241 -11.23907 -10.97083 -10.70042 -10.29638 -9.97094 -9.41470 -8.80578 -6.51465 -0.83654 0.06421 0.43600 0.77220 1.24183 1.41645 1.44305 1.50311 1.59419 2.17560 2.51662 2.64024 2.94054 3.19896 3.42668 3.50914 3.63647 3.75803 3.82286 4.00152 4.04774 4.08151 4.21018 4.32400 4.53494 4.61386 4.66256 4.78551 4.86539 4.91721 4.98739 5.05418 5.09066 5.15317 5.32461 5.33909 5.51846 5.70747 5.86567 6.30534 6.34862 6.57566 6.63123 6.69309 7.29706 8.13235 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003533 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.264677 B = 7924.021316 C = 9542.651680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.344 6.344 4 C 0.534 3.466 5 O -0.517 6.517 6 C 0.058 3.942 7 C -0.089 4.089 8 C -0.071 4.071 9 C -0.042 4.042 10 C -0.099 4.099 11 C -0.105 4.105 12 C 0.035 3.965 13 C -0.452 4.452 14 H 0.100 0.900 15 C 0.039 3.961 16 N -0.807 5.807 17 Si 0.987 3.013 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.253 1.253 21 C 0.005 3.995 22 N -0.501 5.501 23 C 0.144 3.856 24 F -0.142 7.142 25 C 0.108 3.892 26 N -0.441 5.441 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.297 0.703 36 H 0.158 0.842 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -9.833 0.459 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.259 6.259 4 C 0.378 3.622 5 O -0.406 6.406 6 C -0.077 4.077 7 C -0.109 4.109 8 C -0.096 4.096 9 C -0.045 4.045 10 C -0.103 4.103 11 C -0.130 4.130 12 C 0.030 3.970 13 C -0.480 4.480 14 H 0.118 0.882 15 C -0.180 4.180 16 N -0.431 5.431 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.176 1.176 21 C -0.157 4.157 22 N -0.213 5.213 23 C -0.010 4.010 24 F -0.122 7.122 25 C -0.053 4.053 26 N -0.151 5.151 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.175 0.825 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.262 -10.379 0.909 12.700 hybrid contribution 0.392 0.191 -0.833 0.940 sum -6.870 -10.188 0.076 12.288 Atomic orbital electron populations 1.21829 0.90387 1.04517 1.03581 1.23464 0.97234 0.78548 1.03158 1.86695 1.22233 1.34184 1.82802 1.20637 0.81378 0.88057 0.72160 1.90815 1.61055 1.41675 1.47039 1.20209 0.90955 0.90792 1.05762 1.22109 0.94219 0.98747 0.95814 1.21820 1.01300 0.90833 0.95648 1.20102 0.95183 0.93007 0.96221 1.19051 0.99481 0.93355 0.98420 1.21751 1.00553 0.92871 0.97797 1.18790 0.91054 0.93719 0.93431 1.19936 1.33406 0.95335 0.99350 0.88204 1.26851 0.94718 0.97760 0.98651 1.69785 1.33356 1.20436 1.19483 0.85096 0.78056 0.78239 0.77919 1.18691 1.19346 1.17627 1.22634 0.98833 0.97736 0.96491 1.66287 1.27807 1.01268 1.25929 1.17652 1.01773 0.86543 0.94999 1.91401 1.88436 1.65300 1.67070 1.23079 0.92859 0.93681 0.95637 1.67593 1.39288 0.98989 1.09277 0.91520 0.91610 0.87519 0.90634 0.90543 0.81107 0.82898 0.84562 0.89199 0.82475 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.29 71.98 0.74 -1.26 16 2 C 0.05 0.95 6.19 71.98 0.45 1.40 16 3 O -0.34 -9.53 10.03 -56.10 -0.56 -10.10 16 4 C 0.53 16.25 7.94 70.38 0.56 16.81 16 5 O -0.52 -16.32 16.10 19.99 0.32 -15.99 16 6 C 0.06 1.88 6.75 41.86 0.28 2.16 16 7 C -0.09 -2.64 9.62 22.58 0.22 -2.42 16 8 C -0.07 -2.32 9.01 22.65 0.20 -2.12 16 9 C -0.04 -1.57 5.34 -19.88 -0.11 -1.68 16 10 C -0.10 -4.25 5.50 -19.95 -0.11 -4.36 16 11 C -0.10 -4.77 8.30 23.14 0.19 -4.58 16 12 C 0.03 1.63 5.59 -21.22 -0.12 1.52 16 13 C -0.45 -20.24 9.08 23.44 0.21 -20.02 16 14 H 0.10 4.14 7.90 -2.91 -0.02 4.12 16 15 C 0.04 1.63 5.19 85.24 0.44 2.07 16 16 N -0.81 -35.92 10.90 21.82 0.24 -35.68 16 17 Si 0.99 32.05 29.59 68.60 2.03 34.08 16 18 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 19 H -0.27 -8.52 7.11 99.48 0.71 -7.81 16 20 H -0.25 -8.01 7.11 99.48 0.71 -7.31 16 21 C 0.00 0.22 10.96 85.37 0.94 1.16 16 22 N -0.50 -23.73 10.33 -193.67 -2.00 -25.73 16 23 C 0.14 6.57 8.32 85.10 0.71 7.27 16 24 F -0.14 -6.17 15.98 44.97 0.72 -5.45 16 25 C 0.11 3.76 10.70 85.14 0.91 4.67 16 26 N -0.44 -15.07 10.10 -184.12 -1.86 -16.93 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.17 4.23 7.63 -2.91 -0.02 4.21 16 33 H 0.15 4.73 7.87 -2.91 -0.02 4.71 16 34 H 0.14 6.29 6.20 -2.91 -0.02 6.27 16 35 H 0.30 11.97 8.30 -92.71 -0.77 11.20 16 36 H 0.16 6.37 8.06 -2.92 -0.02 6.34 16 37 H 0.18 5.63 8.05 -2.91 -0.02 5.61 16 Total: -1.00 -55.58 337.82 5.52 -50.05 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.12 Total: 25.13 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.52 Total: 0.63 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.62 Total: -78.35 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.24 Total: -26.09 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.72 Total: -5.45 kcal Atomic # 14 Polarization: 32.05 SS G_CDS: 2.03 Total: 34.08 kcal Total: -55.58 5.52 -50.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245256668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.947 kcal (2) G-P(sol) polarization free energy of solvation -55.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds