Wall clock time and date at job start Tue Mar 31 2020 12:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86798 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47626 * 240.00431 * 3 2 1 5 5 H 1.48505 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47033 * 119.99943 * 3 2 1 7 7 C 1.40070 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00116 * 167.23138 * 7 2 1 9 9 C 1.40816 * 119.99388 * 347.22707 * 7 2 1 10 10 C 1.40372 * 120.42116 * 331.90617 * 9 7 2 11 11 C 1.40002 * 117.97756 * 180.23883 * 10 9 7 12 12 C 1.40789 * 121.39960 * 179.70090 * 11 10 9 13 13 C 1.36114 * 119.47145 * 180.02562 * 12 11 10 14 14 C 1.39171 * 121.47146 * 0.02562 * 13 12 11 15 15 C 1.36241 * 121.75113 * 0.02562 * 14 13 12 16 16 C 1.40490 * 119.70635 * 359.97438 * 15 14 13 17 17 N 1.33648 * 120.98340 * 179.97438 * 16 15 14 18 18 C 1.31633 * 121.73823 * 180.02562 * 17 16 15 19 19 C 1.47832 * 119.45150 * 179.97438 * 18 17 16 20 20 C 1.41704 * 119.97864 * 136.81507 * 19 18 17 21 21 C 1.35677 * 119.61720 * 179.97438 * 20 19 18 22 22 C 1.41019 * 119.42926 * 0.02562 * 21 20 19 23 23 N 1.32242 * 133.25673 * 179.97438 * 22 21 20 24 24 N 1.28658 * 109.55093 * 180.02562 * 23 22 21 25 25 C 1.30766 * 110.31667 * 359.97438 * 24 23 22 26 26 N 1.36216 * 107.45868 * 0.02562 * 25 24 23 27 27 C 1.36025 * 133.51559 * 179.97438 * 26 25 24 28 28 H 0.96998 * 119.99946 * 359.97438 * 1 2 3 29 29 H 1.08007 * 121.00995 * 359.97438 * 10 9 7 30 30 H 1.08008 * 120.26499 * 0.05005 * 12 11 10 31 31 H 1.08003 * 119.26549 * 180.02562 * 13 12 11 32 32 H 1.07998 * 119.12479 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.14421 * 179.97438 * 15 14 13 34 34 H 1.07995 * 120.19421 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.28662 * 180.02562 * 21 20 19 36 36 H 1.07996 * 126.27305 * 180.02562 * 25 24 23 37 37 H 1.08001 * 119.82323 * 0.27364 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0956 1.6963 1.2126 7 6 2.0082 -1.2130 -0.0005 8 1 3.0681 -1.2245 -0.2073 9 6 1.3301 -2.4175 0.2686 10 6 0.1837 -2.4221 1.0786 11 6 -0.4472 -3.6490 1.3168 12 6 -1.5978 -3.7378 2.1233 13 6 -2.1793 -4.9511 2.3292 14 6 -1.6617 -6.1109 1.7600 15 6 -0.5508 -6.0885 0.9717 16 6 0.0987 -4.8688 0.7184 17 7 1.1905 -4.8174 -0.0507 18 6 1.8110 -3.6830 -0.2974 19 6 3.0152 -3.6847 -1.1549 20 6 3.1823 -2.6827 -2.1428 21 6 4.2906 -2.6909 -2.9255 22 6 5.2600 -3.6987 -2.7433 23 7 6.4125 -3.9650 -3.3346 24 7 6.9376 -5.0120 -2.8024 25 6 6.1669 -5.4736 -1.8522 26 7 5.0765 -4.6603 -1.7792 27 6 3.9654 -4.6516 -0.9946 28 1 -0.4850 0.8400 0.0004 29 1 -0.1975 -1.5076 1.5086 30 1 -2.0160 -2.8501 2.5747 31 1 -3.0621 -5.0153 2.9481 32 1 -2.1533 -7.0537 1.9489 33 1 -0.1711 -7.0044 0.5434 34 1 2.4319 -1.9168 -2.2721 35 1 4.4292 -1.9322 -3.6814 36 1 6.3594 -6.3406 -1.2378 37 1 3.8363 -5.4112 -0.2378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245658594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:58 Heat of formation + Delta-G solvation = 149.054393 kcal Electronic energy + Delta-G solvation = -24637.266390 eV Core-core repulsion = 21152.464297 eV Total energy + Delta-G solvation = -3484.802093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17771 -39.35186 -37.95102 -36.02262 -34.47538 -33.68228 -31.94153 -31.54034 -29.62203 -29.29812 -28.35685 -25.89564 -24.55211 -23.30796 -22.18540 -22.07649 -21.64439 -20.74332 -18.47171 -17.76563 -16.96626 -16.53168 -16.47292 -16.12435 -15.71673 -15.05044 -14.72131 -14.45912 -13.94320 -13.68035 -13.48649 -13.21872 -12.82925 -12.51022 -12.21110 -12.09664 -11.88244 -11.76951 -11.55690 -11.30758 -11.25728 -11.04395 -10.91131 -10.80115 -10.65186 -10.34613 -10.17846 -9.78090 -9.24454 -9.19968 -8.59847 -7.96816 -7.53224 -7.37587 -7.21038 -4.82421 0.81449 1.22808 1.58880 1.85681 2.61499 2.76216 2.82762 2.84822 2.95391 3.21300 3.52762 3.58841 3.80212 4.36626 4.44349 4.64875 4.81534 4.90928 5.13261 5.22505 5.27848 5.44362 5.51835 5.62685 5.76651 5.92209 5.98173 6.06042 6.09839 6.23860 6.29706 6.44352 6.46132 6.60733 6.63713 6.75306 6.80058 7.02870 7.11973 7.16523 7.19963 7.43829 7.49762 7.68116 8.00989 8.20432 8.25894 8.77034 8.90501 9.64823 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.005622 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.587330 B = 4979.221769 C = 7563.719391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.428 4.428 8 H 0.091 0.909 9 C 0.081 3.919 10 C -0.161 4.161 11 C -0.044 4.044 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.174 4.174 15 C -0.059 4.059 16 C 0.027 3.973 17 N -0.452 5.452 18 C 0.102 3.898 19 C -0.002 4.002 20 C -0.039 4.039 21 C -0.109 4.109 22 C 0.201 3.799 23 N -0.308 5.308 24 N -0.262 5.262 25 C 0.103 3.897 26 N -0.384 5.384 27 C 0.060 3.940 28 H 0.291 0.709 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.221 0.779 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -2.554 1.684 3.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.109 0.891 9 C 0.076 3.924 10 C -0.186 4.186 11 C -0.046 4.046 12 C -0.147 4.147 13 C -0.133 4.133 14 C -0.195 4.195 15 C -0.077 4.077 16 C -0.097 4.097 17 N -0.159 5.159 18 C -0.052 4.052 19 C -0.007 4.007 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.049 4.049 23 N -0.155 5.155 24 N -0.102 5.102 25 C -0.179 4.179 26 N -0.062 5.062 27 C -0.064 4.064 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.237 0.763 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.393 -3.216 0.386 3.525 hybrid contribution -1.249 1.282 1.400 2.273 sum 0.143 -1.933 1.786 2.636 Atomic orbital electron populations 1.69729 1.07764 1.30636 1.30903 1.26040 0.94929 1.01828 0.92198 0.86236 0.80219 0.79221 0.80779 1.18141 1.19798 1.18363 1.19644 0.96897 0.90130 1.38938 0.89109 1.19091 0.92485 0.91130 0.89697 1.21569 0.99359 0.95569 1.02148 1.19709 0.94816 0.93955 0.96137 1.20890 0.96237 0.97169 1.00362 1.20524 0.99557 0.92972 1.00251 1.20311 0.98774 0.97667 1.02721 1.20507 0.94614 0.95739 0.96884 1.19231 0.95476 0.92638 1.02366 1.67343 1.07449 1.28079 1.12990 1.20527 0.95452 0.89946 0.99264 1.18043 0.93053 0.93683 0.95900 1.21601 0.96944 0.96836 0.91025 1.20118 0.92181 0.97801 1.02923 1.22483 0.97358 0.93786 0.91263 1.74842 1.05554 1.11196 1.23926 1.74068 1.23994 1.05531 1.06591 1.26322 0.85804 1.01386 1.04424 1.43717 1.16040 1.21243 1.25227 1.21705 0.85353 1.01992 0.97340 0.89728 0.84687 0.86878 0.87642 0.87505 0.86803 0.82016 0.82789 0.76282 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.38 10.92 55.55 0.61 -15.77 16 2 C 0.07 1.47 5.23 -17.31 -0.09 1.38 16 3 Si 0.91 15.56 29.58 -169.99 -5.03 10.53 16 4 H -0.26 -4.32 7.11 56.52 0.40 -3.92 16 5 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.43 -9.01 6.74 -37.92 -0.26 -9.26 16 8 H 0.09 1.82 6.48 -52.49 -0.34 1.48 16 9 C 0.08 1.79 5.67 -104.69 -0.59 1.20 16 10 C -0.16 -3.62 8.51 -38.12 -0.32 -3.94 16 11 C -0.04 -0.94 5.87 -104.98 -0.62 -1.55 16 12 C -0.13 -2.39 9.80 -39.38 -0.39 -2.77 16 13 C -0.11 -1.91 9.91 -40.00 -0.40 -2.30 16 14 C -0.17 -2.87 9.90 -39.95 -0.40 -3.26 16 15 C -0.06 -1.08 9.98 -39.45 -0.39 -1.47 16 16 C 0.03 0.57 6.75 -82.94 -0.56 0.01 16 17 N -0.45 -9.55 10.02 -4.83 -0.05 -9.59 16 18 C 0.10 2.12 6.54 -80.60 -0.53 1.59 16 19 C 0.00 -0.04 5.24 -105.27 -0.55 -0.60 16 20 C -0.04 -0.65 7.83 -39.18 -0.31 -0.96 16 21 C -0.11 -1.71 10.09 -39.44 -0.40 -2.11 16 22 C 0.20 3.51 7.91 -155.98 -1.23 2.28 16 23 N -0.31 -5.82 12.30 31.18 0.38 -5.43 16 24 N -0.26 -4.64 12.18 29.87 0.36 -4.28 16 25 C 0.10 1.52 12.97 -89.07 -1.16 0.37 16 26 N -0.38 -6.24 2.94 -63.59 -0.19 -6.43 16 27 C 0.06 0.97 10.53 -16.32 -0.17 0.80 16 28 H 0.29 5.67 8.29 -40.82 -0.34 5.33 16 29 H 0.14 3.09 6.32 -52.48 -0.33 2.76 16 30 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.16 2.72 6.77 -52.49 -0.36 2.37 16 35 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.22 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.17 2.47 8.04 -52.49 -0.42 2.05 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -26.14 322.99 -10.52 -36.66 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -3.12 Total: 10.06 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -8.36 Total: -20.61 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 1.12 Total: -41.51 kcal Atomic # 14 Polarization: 15.56 SS G_CDS: -5.03 Total: 10.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.14 -10.52 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245658594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.712 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds