Wall clock time and date at job start Tue Mar 31 2020 12:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86798 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47626 * 240.00431 * 3 2 1 5 5 H 1.48505 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47033 * 119.99943 * 3 2 1 7 7 C 1.40070 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00116 * 167.23138 * 7 2 1 9 9 C 1.40816 * 119.99388 * 347.22707 * 7 2 1 10 10 C 1.40372 * 120.42116 * 331.90617 * 9 7 2 11 11 C 1.40002 * 117.97756 * 180.23883 * 10 9 7 12 12 C 1.40789 * 121.39960 * 179.70090 * 11 10 9 13 13 C 1.36114 * 119.47145 * 180.02562 * 12 11 10 14 14 C 1.39171 * 121.47146 * 0.02562 * 13 12 11 15 15 C 1.36241 * 121.75113 * 0.02562 * 14 13 12 16 16 C 1.40490 * 119.70635 * 359.97438 * 15 14 13 17 17 N 1.33648 * 120.98340 * 179.97438 * 16 15 14 18 18 C 1.31633 * 121.73823 * 180.02562 * 17 16 15 19 19 C 1.47832 * 119.45150 * 179.97438 * 18 17 16 20 20 C 1.41704 * 119.97864 * 136.81507 * 19 18 17 21 21 C 1.35677 * 119.61720 * 179.97438 * 20 19 18 22 22 C 1.41019 * 119.42926 * 0.02562 * 21 20 19 23 23 N 1.32242 * 133.25673 * 179.97438 * 22 21 20 24 24 N 1.28658 * 109.55093 * 180.02562 * 23 22 21 25 25 C 1.30766 * 110.31667 * 359.97438 * 24 23 22 26 26 N 1.36216 * 107.45868 * 0.02562 * 25 24 23 27 27 C 1.36025 * 133.51559 * 179.97438 * 26 25 24 28 28 H 0.96998 * 119.99946 * 359.97438 * 1 2 3 29 29 H 1.08007 * 121.00995 * 359.97438 * 10 9 7 30 30 H 1.08008 * 120.26499 * 0.05005 * 12 11 10 31 31 H 1.08003 * 119.26549 * 180.02562 * 13 12 11 32 32 H 1.07998 * 119.12479 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.14421 * 179.97438 * 15 14 13 34 34 H 1.07995 * 120.19421 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.28662 * 180.02562 * 21 20 19 36 36 H 1.07996 * 126.27305 * 180.02562 * 25 24 23 37 37 H 1.08001 * 119.82323 * 0.27364 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0955 1.6965 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0956 1.6963 1.2126 7 6 2.0082 -1.2130 -0.0005 8 1 3.0681 -1.2245 -0.2073 9 6 1.3301 -2.4175 0.2686 10 6 0.1837 -2.4221 1.0786 11 6 -0.4472 -3.6490 1.3168 12 6 -1.5978 -3.7378 2.1233 13 6 -2.1793 -4.9511 2.3292 14 6 -1.6617 -6.1109 1.7600 15 6 -0.5508 -6.0885 0.9717 16 6 0.0987 -4.8688 0.7184 17 7 1.1905 -4.8174 -0.0507 18 6 1.8110 -3.6830 -0.2974 19 6 3.0152 -3.6847 -1.1549 20 6 3.1823 -2.6827 -2.1428 21 6 4.2906 -2.6909 -2.9255 22 6 5.2600 -3.6987 -2.7433 23 7 6.4125 -3.9650 -3.3346 24 7 6.9376 -5.0120 -2.8024 25 6 6.1669 -5.4736 -1.8522 26 7 5.0765 -4.6603 -1.7792 27 6 3.9654 -4.6516 -0.9946 28 1 -0.4850 0.8400 0.0004 29 1 -0.1975 -1.5076 1.5086 30 1 -2.0160 -2.8501 2.5747 31 1 -3.0621 -5.0153 2.9481 32 1 -2.1533 -7.0537 1.9489 33 1 -0.1711 -7.0044 0.5434 34 1 2.4319 -1.9168 -2.2721 35 1 4.4292 -1.9322 -3.6814 36 1 6.3594 -6.3406 -1.2378 37 1 3.8363 -5.4112 -0.2378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245658594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:58 Heat of formation + Delta-G solvation = 139.656398 kcal Electronic energy + Delta-G solvation = -24637.673918 eV Core-core repulsion = 21152.464297 eV Total energy + Delta-G solvation = -3485.209620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.47568 -40.83673 -39.29906 -37.45794 -36.00626 -34.98918 -33.45477 -32.91125 -31.10973 -30.64042 -29.74678 -27.42499 -25.92376 -24.62816 -23.62953 -23.41601 -23.03650 -22.25442 -19.91882 -19.14110 -18.30471 -17.96260 -17.89714 -17.43848 -17.16339 -16.43119 -16.01202 -15.70772 -15.31926 -15.08846 -14.88441 -14.74308 -14.29981 -13.91600 -13.59088 -13.55139 -13.36351 -13.11943 -12.94397 -12.76064 -12.57664 -12.40142 -12.28630 -12.14094 -12.03073 -11.67567 -11.63630 -11.28987 -10.75427 -10.58833 -10.16472 -9.35412 -9.00166 -8.84249 -8.70920 -6.42164 -0.53670 -0.12247 0.17800 0.39920 1.34638 1.37696 1.42272 1.50857 1.60941 1.74942 2.11266 2.17682 2.42620 2.92398 3.09985 3.27900 3.52419 3.71977 3.75083 3.92168 3.95080 4.00632 4.25695 4.29985 4.35276 4.59185 4.61977 4.65398 4.73839 4.86673 4.99629 5.04337 5.09014 5.16145 5.26195 5.36608 5.42679 5.54223 5.68972 5.77626 5.85756 5.91495 5.94513 6.21970 6.44340 6.64018 6.68607 7.32353 7.46918 8.15047 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.005622 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.587330 B = 4979.221769 C = 7563.719391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.043 3.957 3 Si 0.971 3.029 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.442 4.442 8 H 0.095 0.905 9 C 0.058 3.942 10 C -0.191 4.191 11 C -0.064 4.064 12 C -0.151 4.151 13 C -0.102 4.102 14 C -0.162 4.162 15 C -0.073 4.073 16 C 0.001 3.999 17 N -0.459 5.459 18 C 0.099 3.901 19 C -0.024 4.024 20 C -0.042 4.042 21 C -0.101 4.101 22 C 0.188 3.812 23 N -0.335 5.335 24 N -0.292 5.292 25 C 0.127 3.873 26 N -0.390 5.390 27 C 0.080 3.920 28 H 0.295 0.705 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.269 0.731 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -4.111 2.227 4.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.053 3.947 10 C -0.216 4.216 11 C -0.066 4.066 12 C -0.170 4.170 13 C -0.120 4.120 14 C -0.182 4.182 15 C -0.091 4.091 16 C -0.123 4.123 17 N -0.166 5.166 18 C -0.055 4.055 19 C -0.029 4.029 20 C -0.067 4.067 21 C -0.122 4.122 22 C -0.062 4.062 23 N -0.181 5.181 24 N -0.130 5.130 25 C -0.156 4.156 26 N -0.069 5.069 27 C -0.044 4.044 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.195 0.805 36 H 0.284 0.716 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.386 -4.788 0.915 5.068 hybrid contribution -1.298 1.556 1.288 2.401 sum 0.088 -3.231 2.203 3.912 Atomic orbital electron populations 1.69791 1.09025 1.31482 1.31983 1.26706 0.95362 1.04206 0.91385 0.85360 0.79008 0.75820 0.80623 1.17295 1.19401 1.18820 1.19771 0.97046 0.90445 1.39715 0.88748 1.19384 0.92900 0.92281 0.90131 1.21516 1.00720 0.95658 1.03738 1.20003 0.95866 0.93842 0.96889 1.21087 0.96123 0.98805 1.00958 1.20986 0.99896 0.91945 0.99160 1.20807 0.97572 0.99267 1.00533 1.20798 0.95342 0.95292 0.97694 1.19739 0.96009 0.93700 1.02822 1.67404 1.07766 1.28098 1.13349 1.20793 0.96116 0.89482 0.99149 1.17993 0.93024 0.95229 0.96626 1.21485 0.97272 0.96684 0.91298 1.20318 0.91170 0.97809 1.02875 1.22740 0.97403 0.94455 0.91629 1.74787 1.06262 1.12096 1.24911 1.74023 1.25054 1.05918 1.08029 1.27306 0.84020 1.01193 1.03036 1.43866 1.16413 1.21480 1.25143 1.21778 0.84578 1.01236 0.96772 0.89329 0.86282 0.86216 0.83816 0.83488 0.85043 0.82697 0.80469 0.71566 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.61 10.92 21.85 0.24 -35.37 16 2 C 0.04 1.78 5.23 85.29 0.45 2.23 16 3 Si 0.97 32.25 29.58 68.60 2.03 34.28 16 4 H -0.25 -7.89 7.11 99.48 0.71 -7.18 16 5 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.44 -19.29 6.74 23.35 0.16 -19.14 16 8 H 0.09 3.91 6.48 -2.91 -0.02 3.89 16 9 C 0.06 2.68 5.67 -19.91 -0.11 2.57 16 10 C -0.19 -9.03 8.51 23.22 0.20 -8.84 16 11 C -0.06 -2.81 5.87 -20.10 -0.12 -2.92 16 12 C -0.15 -5.61 9.80 22.40 0.22 -5.39 16 13 C -0.10 -3.10 9.91 22.00 0.22 -2.88 16 14 C -0.16 -4.77 9.90 22.03 0.22 -4.56 16 15 C -0.07 -2.53 9.98 22.35 0.22 -2.31 16 16 C 0.00 0.03 6.75 41.55 0.28 0.31 16 17 N -0.46 -19.56 10.02 -169.20 -1.70 -21.25 16 18 C 0.10 4.22 6.54 43.94 0.29 4.51 16 19 C -0.02 -0.88 5.24 -20.29 -0.11 -0.99 16 20 C -0.04 -1.43 7.83 22.53 0.18 -1.25 16 21 C -0.10 -3.10 10.09 22.36 0.23 -2.87 16 22 C 0.19 6.38 7.91 134.12 1.06 7.45 16 23 N -0.33 -12.30 12.30 -55.26 -0.68 -12.98 16 24 N -0.29 -9.87 12.18 -59.41 -0.72 -10.60 16 25 C 0.13 3.41 12.97 179.81 2.33 5.74 16 26 N -0.39 -11.99 2.94 -355.10 -1.05 -13.04 16 27 C 0.08 2.51 10.53 83.64 0.88 3.39 16 28 H 0.30 11.97 8.29 -92.71 -0.77 11.20 16 29 H 0.12 5.85 6.32 -2.91 -0.02 5.83 16 30 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 34 H 0.16 5.40 6.77 -2.91 -0.02 5.38 16 35 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.27 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.19 5.09 8.04 -2.91 -0.02 5.07 16 Total: -1.00 -58.71 322.99 5.84 -52.87 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 1.13 Total: 31.04 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 6.59 Total: -24.95 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.90 Total: -93.24 kcal Atomic # 14 Polarization: 32.25 SS G_CDS: 2.03 Total: 34.28 kcal Total: -58.71 5.84 -52.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245658594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.527 kcal (2) G-P(sol) polarization free energy of solvation -58.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds