Wall clock time and date at job start Tue Mar 31 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38500 * 125.83338 * 2 1 4 4 C 1.40117 * 125.92555 * 0.04059 * 3 2 1 5 5 H 1.07995 * 120.00553 * 354.34043 * 4 3 2 6 6 C 1.40044 * 119.99946 * 174.33280 * 4 3 2 7 7 N 1.30800 * 119.99554 * 6.08253 * 6 4 3 8 8 Si 1.86796 * 120.00199 * 186.07806 * 6 4 3 9 9 H 1.48501 * 109.47059 * 94.98592 * 8 6 4 10 10 H 1.48497 * 109.47416 * 214.98466 * 8 6 4 11 11 H 1.48499 * 109.47085 * 334.98615 * 8 6 4 12 12 N 1.32242 * 108.14614 * 179.79984 * 3 2 1 13 13 N 1.40160 * 107.75710 * 0.37649 * 12 3 2 14 14 C 1.46503 * 126.14425 * 179.88390 * 13 12 3 15 15 N 1.46897 * 109.47395 * 269.68828 * 14 13 12 16 16 C 1.48556 * 110.99964 * 169.99823 * 15 14 13 17 17 C 1.54384 * 104.59361 * 200.95998 * 16 15 14 18 18 H 1.08994 * 118.16093 * 244.14470 * 17 16 15 19 19 C 1.54254 * 105.05985 * 23.85867 * 17 16 15 20 20 H 1.09008 * 121.78676 * 222.13121 * 19 17 16 21 21 C 1.52149 * 110.66491 * 54.51166 * 15 14 13 22 22 C 1.52997 * 59.72979 * 114.08970 * 19 17 16 23 23 F 1.39908 * 117.44146 * 107.64534 * 22 19 17 24 24 F 1.39892 * 117.44399 * 252.39355 * 22 19 17 25 25 C 1.34729 * 125.83452 * 180.02562 * 2 1 3 26 26 S 1.71198 * 125.97485 * 359.93532 * 25 2 1 27 27 H 1.09001 * 109.46900 * 269.97818 * 1 2 3 28 28 H 1.08996 * 109.47800 * 29.97426 * 1 2 3 29 29 H 1.09002 * 109.47026 * 149.98245 * 1 2 3 30 30 H 0.97006 * 119.99594 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.47000 * 149.68864 * 14 13 12 32 32 H 1.09004 * 109.46922 * 29.69388 * 14 13 12 33 33 H 1.09000 * 110.41433 * 82.18458 * 16 15 14 34 34 H 1.08995 * 110.51374 * 319.78976 * 16 15 14 35 35 H 1.09004 * 110.22536 * 41.38922 * 21 15 14 36 36 H 1.08999 * 112.21841 * 277.81872 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2758 1.1229 0.0000 4 6 1.8372 2.4536 0.0008 5 1 0.7842 2.6753 -0.0907 6 6 2.7643 3.4964 0.1205 7 7 4.0461 3.2359 0.1117 8 14 2.1705 5.2590 0.2924 9 1 2.1091 5.6225 1.7310 10 1 3.1118 6.1691 -0.4082 11 1 0.8186 5.3868 -0.3086 12 7 3.5357 0.7211 0.0044 13 7 3.5374 -0.6805 -0.0015 14 6 4.7216 -1.5432 -0.0018 15 7 5.1168 -1.8318 -1.3869 16 6 6.4429 -2.4998 -1.4339 17 6 6.9533 -2.2506 -2.8694 18 1 7.0957 -3.1122 -3.5216 19 6 6.2101 -0.9854 -3.3451 20 1 5.7989 -0.9052 -4.3514 21 6 5.3140 -0.5416 -2.1689 22 6 7.7268 -0.9598 -3.1459 23 9 8.5272 -0.9208 -4.2928 24 9 8.2204 -0.2558 -2.0424 25 6 2.2537 -1.0923 -0.0005 26 16 1.7193 -2.7187 0.0003 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 4.6883 3.9582 0.1942 31 1 4.4914 -2.4764 0.5123 32 1 5.5395 -1.0377 0.5117 33 1 6.3369 -3.5687 -1.2483 34 1 7.1212 -2.0540 -0.7064 35 1 5.8304 0.1961 -1.5548 36 1 4.3725 -0.1367 -2.5400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328638142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:39 Heat of formation + Delta-G solvation = 36.530536 kcal Electronic energy + Delta-G solvation = -24681.638032 eV Core-core repulsion = 20773.170960 eV Total energy + Delta-G solvation = -3908.467072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.73164 -47.40230 -40.94764 -39.24050 -35.25130 -34.07074 -32.95917 -30.64403 -28.59522 -27.94616 -26.62895 -25.32644 -22.95428 -21.47846 -21.04834 -20.88831 -20.50935 -17.92459 -17.78069 -17.02033 -16.53861 -16.06601 -15.91714 -15.74381 -15.08536 -14.87453 -14.72639 -14.20812 -14.04287 -13.71194 -13.60702 -13.38658 -13.02417 -12.63101 -12.29292 -12.25981 -12.04525 -11.86489 -11.70748 -11.58683 -11.42816 -11.09726 -10.79304 -10.64987 -10.55066 -10.13237 -9.91536 -9.61251 -9.30568 -8.95686 -8.39956 -7.12411 -6.78497 -6.69214 -5.21602 2.25929 2.52194 2.72847 2.82428 2.87193 2.91143 2.94717 3.33149 3.45920 3.59738 3.98533 4.02202 4.12238 4.17903 4.58312 4.76723 4.83496 5.06312 5.13012 5.29062 5.47794 5.52045 5.59731 5.66381 5.76345 5.82439 5.98264 6.07077 6.14174 6.20738 6.44788 6.64013 6.74182 6.89286 6.95176 7.49786 7.70222 8.16864 8.28372 9.07211 9.85056 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.005372 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.188828 B = 5210.581761 C = 7200.557615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.517 5.517 3 C 0.376 3.624 4 C -0.436 4.436 5 H 0.098 0.902 6 C 0.077 3.923 7 N -0.736 5.736 8 Si 0.928 3.072 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.259 1.259 12 N -0.346 5.346 13 N -0.384 5.384 14 C 0.318 3.682 15 N -0.512 5.512 16 C 0.066 3.934 17 C -0.154 4.154 18 H 0.143 0.857 19 C -0.154 4.154 20 H 0.139 0.861 21 C 0.072 3.928 22 C 0.214 3.786 23 F -0.159 7.159 24 F -0.158 7.158 25 C 0.481 3.519 26 S -0.702 6.702 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.286 0.714 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -1.259 -3.779 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.127 3.873 4 C -0.478 4.478 5 H 0.116 0.884 6 C -0.150 4.150 7 N -0.360 5.360 8 Si 0.751 3.249 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.182 1.182 12 N -0.178 5.178 13 N -0.170 5.170 14 C 0.106 3.894 15 N -0.238 5.238 16 C -0.062 4.062 17 C -0.174 4.174 18 H 0.161 0.839 19 C -0.174 4.174 20 H 0.157 0.843 21 C -0.055 4.055 22 C 0.177 3.823 23 F -0.139 7.139 24 F -0.139 7.139 25 C 0.112 3.888 26 S -0.577 6.577 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.226 -2.185 -3.951 6.906 hybrid contribution 0.174 2.080 0.301 2.109 sum 5.400 -0.105 -3.650 6.519 Atomic orbital electron populations 1.21758 0.75341 1.04144 1.03027 1.45989 1.08266 1.04986 1.62559 1.21272 0.84072 0.88517 0.93409 1.18374 0.95924 0.85605 1.47898 0.88415 1.25835 0.94295 1.01908 0.92922 1.69869 1.01734 1.35244 1.29182 0.85953 0.79879 0.79572 0.79499 1.19132 1.19768 1.18225 1.79375 1.14101 0.82077 1.42256 1.48999 1.03310 1.07095 1.57610 1.21917 0.84123 0.93468 0.89941 1.66749 1.25550 1.19091 1.12450 1.22528 0.89175 1.01576 0.92923 1.24748 0.99347 0.93022 1.00243 0.83884 1.24811 0.89548 0.99854 1.03186 0.84328 1.23210 0.99191 0.91302 0.91786 1.20280 0.87616 0.98519 0.75855 1.93017 1.75624 1.96864 1.48414 1.93021 1.89245 1.79932 1.51687 1.22905 0.84755 0.92407 0.88691 1.92754 1.84963 0.99096 1.80917 0.91447 0.89811 0.89175 0.90316 0.86584 0.91504 0.87748 0.92340 0.90741 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.66 59.85 0.64 2.38 16 2 N -0.52 -11.35 3.17 -124.66 -0.39 -11.75 16 3 C 0.38 8.88 7.50 -155.27 -1.16 7.72 16 4 C -0.44 -9.78 8.99 -38.20 -0.34 -10.12 16 5 H 0.10 1.98 7.08 -52.49 -0.37 1.60 16 6 C 0.08 1.68 5.49 -17.31 -0.10 1.58 16 7 N -0.74 -17.10 11.92 55.55 0.66 -16.44 16 8 Si 0.93 16.15 29.56 -169.99 -5.03 11.12 16 9 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 10 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 11 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 12 N -0.35 -8.34 10.27 31.21 0.32 -8.02 16 13 N -0.38 -8.50 3.24 -65.04 -0.21 -8.71 16 14 C 0.32 5.86 6.04 -63.31 -0.38 5.48 16 15 N -0.51 -8.56 5.65 -230.57 -1.30 -9.86 16 16 C 0.07 0.85 6.20 -2.18 -0.01 0.84 16 17 C -0.15 -1.83 7.11 -89.24 -0.63 -2.47 16 18 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 19 C -0.15 -2.12 7.02 -89.24 -0.63 -2.75 16 20 H 0.14 1.69 8.14 -51.92 -0.42 1.27 16 21 C 0.07 1.23 5.38 -0.11 0.00 1.23 16 22 C 0.21 2.91 5.12 -26.73 -0.14 2.77 16 23 F -0.16 -2.15 17.60 2.25 0.04 -2.11 16 24 F -0.16 -2.45 16.18 2.25 0.04 -2.41 16 25 C 0.48 11.13 7.84 -86.93 -0.68 10.45 16 26 S -0.70 -16.98 29.50 -107.50 -3.17 -20.15 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.27 7.27 -51.93 -0.38 0.89 16 29 H 0.09 1.56 7.61 -51.93 -0.40 1.16 16 30 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 31 H 0.12 2.11 7.64 -51.92 -0.40 1.71 16 32 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.74 7.33 -51.93 -0.38 0.35 16 35 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16 36 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -28.97 327.07 -11.52 -40.50 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.97 Total: 5.80 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: -3.44 Total: 17.10 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.93 Total: -54.78 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.52 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal Atomic # 16 Polarization: -16.98 SS G_CDS: -3.17 Total: -20.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.97 -11.52 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328638142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds