Wall clock time and date at job start Tue Mar 31 2020 11:46:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.38500 * 125.83338 * 2 1
4 4 C 1.40117 * 125.92555 * 0.04059 * 3 2 1
5 5 H 1.07995 * 120.00553 * 354.34043 * 4 3 2
6 6 C 1.40044 * 119.99946 * 174.33280 * 4 3 2
7 7 N 1.30800 * 119.99554 * 6.08253 * 6 4 3
8 8 Si 1.86796 * 120.00199 * 186.07806 * 6 4 3
9 9 H 1.48501 * 109.47059 * 94.98592 * 8 6 4
10 10 H 1.48497 * 109.47416 * 214.98466 * 8 6 4
11 11 H 1.48499 * 109.47085 * 334.98615 * 8 6 4
12 12 N 1.32242 * 108.14614 * 179.79984 * 3 2 1
13 13 N 1.40160 * 107.75710 * 0.37649 * 12 3 2
14 14 C 1.46503 * 126.14425 * 179.88390 * 13 12 3
15 15 N 1.46897 * 109.47395 * 269.68828 * 14 13 12
16 16 C 1.48556 * 110.99964 * 169.99823 * 15 14 13
17 17 C 1.54384 * 104.59361 * 200.95998 * 16 15 14
18 18 H 1.08994 * 118.16093 * 244.14470 * 17 16 15
19 19 C 1.54254 * 105.05985 * 23.85867 * 17 16 15
20 20 H 1.09008 * 121.78676 * 222.13121 * 19 17 16
21 21 C 1.52149 * 110.66491 * 54.51166 * 15 14 13
22 22 C 1.52997 * 59.72979 * 114.08970 * 19 17 16
23 23 F 1.39908 * 117.44146 * 107.64534 * 22 19 17
24 24 F 1.39892 * 117.44399 * 252.39355 * 22 19 17
25 25 C 1.34729 * 125.83452 * 180.02562 * 2 1 3
26 26 S 1.71198 * 125.97485 * 359.93532 * 25 2 1
27 27 H 1.09001 * 109.46900 * 269.97818 * 1 2 3
28 28 H 1.08996 * 109.47800 * 29.97426 * 1 2 3
29 29 H 1.09002 * 109.47026 * 149.98245 * 1 2 3
30 30 H 0.97006 * 119.99594 * 179.97438 * 7 6 4
31 31 H 1.09009 * 109.47000 * 149.68864 * 14 13 12
32 32 H 1.09004 * 109.46922 * 29.69388 * 14 13 12
33 33 H 1.09000 * 110.41433 * 82.18458 * 16 15 14
34 34 H 1.08995 * 110.51374 * 319.78976 * 16 15 14
35 35 H 1.09004 * 110.22536 * 41.38922 * 21 15 14
36 36 H 1.08999 * 112.21841 * 277.81872 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2758 1.1229 0.0000
4 6 1.8372 2.4536 0.0008
5 1 0.7842 2.6753 -0.0907
6 6 2.7643 3.4964 0.1205
7 7 4.0461 3.2359 0.1117
8 14 2.1705 5.2590 0.2924
9 1 2.1091 5.6225 1.7310
10 1 3.1118 6.1691 -0.4082
11 1 0.8186 5.3868 -0.3086
12 7 3.5357 0.7211 0.0044
13 7 3.5374 -0.6805 -0.0015
14 6 4.7216 -1.5432 -0.0018
15 7 5.1168 -1.8318 -1.3869
16 6 6.4429 -2.4998 -1.4339
17 6 6.9533 -2.2506 -2.8694
18 1 7.0957 -3.1122 -3.5216
19 6 6.2101 -0.9854 -3.3451
20 1 5.7989 -0.9052 -4.3514
21 6 5.3140 -0.5416 -2.1689
22 6 7.7268 -0.9598 -3.1459
23 9 8.5272 -0.9208 -4.2928
24 9 8.2204 -0.2558 -2.0424
25 6 2.2537 -1.0923 -0.0005
26 16 1.7193 -2.7187 0.0003
27 1 -0.3633 -0.0004 1.0277
28 1 -0.3634 0.8901 -0.5134
29 1 -0.3633 -0.8898 -0.5141
30 1 4.6883 3.9582 0.1942
31 1 4.4914 -2.4764 0.5123
32 1 5.5395 -1.0377 0.5117
33 1 6.3369 -3.5687 -1.2483
34 1 7.1212 -2.0540 -0.7064
35 1 5.8304 0.1961 -1.5548
36 1 4.3725 -0.1367 -2.5400
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001328638142.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:46:39
Heat of formation + Delta-G solvation = 36.530536 kcal
Electronic energy + Delta-G solvation = -24681.638032 eV
Core-core repulsion = 20773.170960 eV
Total energy + Delta-G solvation = -3908.467072 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.086 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-48.73164 -47.40230 -40.94764 -39.24050 -35.25130 -34.07074 -32.95917 -30.64403
-28.59522 -27.94616 -26.62895 -25.32644 -22.95428 -21.47846 -21.04834 -20.88831
-20.50935 -17.92459 -17.78069 -17.02033 -16.53861 -16.06601 -15.91714 -15.74381
-15.08536 -14.87453 -14.72639 -14.20812 -14.04287 -13.71194 -13.60702 -13.38658
-13.02417 -12.63101 -12.29292 -12.25981 -12.04525 -11.86489 -11.70748 -11.58683
-11.42816 -11.09726 -10.79304 -10.64987 -10.55066 -10.13237 -9.91536 -9.61251
-9.30568 -8.95686 -8.39956 -7.12411 -6.78497 -6.69214 -5.21602 2.25929
2.52194 2.72847 2.82428 2.87193 2.91143 2.94717 3.33149 3.45920
3.59738 3.98533 4.02202 4.12238 4.17903 4.58312 4.76723 4.83496
5.06312 5.13012 5.29062 5.47794 5.52045 5.59731 5.66381 5.76345
5.82439 5.98264 6.07077 6.14174 6.20738 6.44788 6.64013 6.74182
6.89286 6.95176 7.49786 7.70222 8.16864 8.28372 9.07211 9.85056
Molecular weight = 316.09amu
Principal moments of inertia in cm(-1)
A = 0.011434 B = 0.005372 C = 0.003888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2448.188828 B = 5210.581761 C = 7200.557615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.517 5.517
3 C 0.376 3.624
4 C -0.436 4.436
5 H 0.098 0.902
6 C 0.077 3.923
7 N -0.736 5.736
8 Si 0.928 3.072
9 H -0.266 1.266
10 H -0.273 1.273
11 H -0.259 1.259
12 N -0.346 5.346
13 N -0.384 5.384
14 C 0.318 3.682
15 N -0.512 5.512
16 C 0.066 3.934
17 C -0.154 4.154
18 H 0.143 0.857
19 C -0.154 4.154
20 H 0.139 0.861
21 C 0.072 3.928
22 C 0.214 3.786
23 F -0.159 7.159
24 F -0.158 7.158
25 C 0.481 3.519
26 S -0.702 6.702
27 H 0.067 0.933
28 H 0.083 0.917
29 H 0.090 0.910
30 H 0.286 0.714
31 H 0.116 0.884
32 H 0.067 0.933
33 H 0.104 0.896
34 H 0.058 0.942
35 H 0.074 0.926
36 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.651 -1.259 -3.779 6.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.218 5.218
3 C 0.127 3.873
4 C -0.478 4.478
5 H 0.116 0.884
6 C -0.150 4.150
7 N -0.360 5.360
8 Si 0.751 3.249
9 H -0.191 1.191
10 H -0.198 1.198
11 H -0.182 1.182
12 N -0.178 5.178
13 N -0.170 5.170
14 C 0.106 3.894
15 N -0.238 5.238
16 C -0.062 4.062
17 C -0.174 4.174
18 H 0.161 0.839
19 C -0.174 4.174
20 H 0.157 0.843
21 C -0.055 4.055
22 C 0.177 3.823
23 F -0.139 7.139
24 F -0.139 7.139
25 C 0.112 3.888
26 S -0.577 6.577
27 H 0.086 0.914
28 H 0.102 0.898
29 H 0.108 0.892
30 H 0.097 0.903
31 H 0.134 0.866
32 H 0.085 0.915
33 H 0.123 0.877
34 H 0.077 0.923
35 H 0.093 0.907
36 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 5.226 -2.185 -3.951 6.906
hybrid contribution 0.174 2.080 0.301 2.109
sum 5.400 -0.105 -3.650 6.519
Atomic orbital electron populations
1.21758 0.75341 1.04144 1.03027 1.45989 1.08266 1.04986 1.62559
1.21272 0.84072 0.88517 0.93409 1.18374 0.95924 0.85605 1.47898
0.88415 1.25835 0.94295 1.01908 0.92922 1.69869 1.01734 1.35244
1.29182 0.85953 0.79879 0.79572 0.79499 1.19132 1.19768 1.18225
1.79375 1.14101 0.82077 1.42256 1.48999 1.03310 1.07095 1.57610
1.21917 0.84123 0.93468 0.89941 1.66749 1.25550 1.19091 1.12450
1.22528 0.89175 1.01576 0.92923 1.24748 0.99347 0.93022 1.00243
0.83884 1.24811 0.89548 0.99854 1.03186 0.84328 1.23210 0.99191
0.91302 0.91786 1.20280 0.87616 0.98519 0.75855 1.93017 1.75624
1.96864 1.48414 1.93021 1.89245 1.79932 1.51687 1.22905 0.84755
0.92407 0.88691 1.92754 1.84963 0.99096 1.80917 0.91447 0.89811
0.89175 0.90316 0.86584 0.91504 0.87748 0.92340 0.90741 0.88428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.74 10.66 59.85 0.64 2.38 16
2 N -0.52 -11.35 3.17 -124.66 -0.39 -11.75 16
3 C 0.38 8.88 7.50 -155.27 -1.16 7.72 16
4 C -0.44 -9.78 8.99 -38.20 -0.34 -10.12 16
5 H 0.10 1.98 7.08 -52.49 -0.37 1.60 16
6 C 0.08 1.68 5.49 -17.31 -0.10 1.58 16
7 N -0.74 -17.10 11.92 55.55 0.66 -16.44 16
8 Si 0.93 16.15 29.56 -169.99 -5.03 11.12 16
9 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16
10 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16
11 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16
12 N -0.35 -8.34 10.27 31.21 0.32 -8.02 16
13 N -0.38 -8.50 3.24 -65.04 -0.21 -8.71 16
14 C 0.32 5.86 6.04 -63.31 -0.38 5.48 16
15 N -0.51 -8.56 5.65 -230.57 -1.30 -9.86 16
16 C 0.07 0.85 6.20 -2.18 -0.01 0.84 16
17 C -0.15 -1.83 7.11 -89.24 -0.63 -2.47 16
18 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16
19 C -0.15 -2.12 7.02 -89.24 -0.63 -2.75 16
20 H 0.14 1.69 8.14 -51.92 -0.42 1.27 16
21 C 0.07 1.23 5.38 -0.11 0.00 1.23 16
22 C 0.21 2.91 5.12 -26.73 -0.14 2.77 16
23 F -0.16 -2.15 17.60 2.25 0.04 -2.11 16
24 F -0.16 -2.45 16.18 2.25 0.04 -2.41 16
25 C 0.48 11.13 7.84 -86.93 -0.68 10.45 16
26 S -0.70 -16.98 29.50 -107.50 -3.17 -20.15 16
27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.08 1.27 7.27 -51.93 -0.38 0.89 16
29 H 0.09 1.56 7.61 -51.93 -0.40 1.16 16
30 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16
31 H 0.12 2.11 7.64 -51.92 -0.40 1.71 16
32 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16
33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.06 0.74 7.33 -51.93 -0.38 0.35 16
35 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16
36 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16
LS Contribution 327.07 15.07 4.93 4.93
Total: -1.00 -28.97 327.07 -11.52 -40.50
By element:
Atomic # 1 Polarization: 9.77 SS G_CDS: -3.97 Total: 5.80 kcal
Atomic # 6 Polarization: 20.54 SS G_CDS: -3.44 Total: 17.10 kcal
Atomic # 7 Polarization: -53.86 SS G_CDS: -0.93 Total: -54.78 kcal
Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.52 kcal
Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal
Atomic # 16 Polarization: -16.98 SS G_CDS: -3.17 Total: -20.15 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -28.97 -11.52 -40.50 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328638142.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal
(2) G-P(sol) polarization free energy of solvation -28.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds