Wall clock time and date at job start Tue Mar 31 2020 11:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38500 * 125.83338 * 2 1 4 4 C 1.40117 * 125.92555 * 0.04059 * 3 2 1 5 5 H 1.07995 * 120.00553 * 354.34043 * 4 3 2 6 6 C 1.40044 * 119.99946 * 174.33280 * 4 3 2 7 7 N 1.30800 * 119.99554 * 6.08253 * 6 4 3 8 8 Si 1.86796 * 120.00199 * 186.07806 * 6 4 3 9 9 H 1.48501 * 109.47059 * 94.98592 * 8 6 4 10 10 H 1.48497 * 109.47416 * 214.98466 * 8 6 4 11 11 H 1.48499 * 109.47085 * 334.98615 * 8 6 4 12 12 N 1.32242 * 108.14614 * 179.79984 * 3 2 1 13 13 N 1.40160 * 107.75710 * 0.37649 * 12 3 2 14 14 C 1.46503 * 126.14425 * 179.88390 * 13 12 3 15 15 N 1.46897 * 109.47395 * 269.68828 * 14 13 12 16 16 C 1.48556 * 110.99964 * 169.99823 * 15 14 13 17 17 C 1.54384 * 104.59361 * 200.95998 * 16 15 14 18 18 H 1.08994 * 118.16093 * 244.14470 * 17 16 15 19 19 C 1.54254 * 105.05985 * 23.85867 * 17 16 15 20 20 H 1.09008 * 121.78676 * 222.13121 * 19 17 16 21 21 C 1.52149 * 110.66491 * 54.51166 * 15 14 13 22 22 C 1.52997 * 59.72979 * 114.08970 * 19 17 16 23 23 F 1.39908 * 117.44146 * 107.64534 * 22 19 17 24 24 F 1.39892 * 117.44399 * 252.39355 * 22 19 17 25 25 C 1.34729 * 125.83452 * 180.02562 * 2 1 3 26 26 S 1.71198 * 125.97485 * 359.93532 * 25 2 1 27 27 H 1.09001 * 109.46900 * 269.97818 * 1 2 3 28 28 H 1.08996 * 109.47800 * 29.97426 * 1 2 3 29 29 H 1.09002 * 109.47026 * 149.98245 * 1 2 3 30 30 H 0.97006 * 119.99594 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.47000 * 149.68864 * 14 13 12 32 32 H 1.09004 * 109.46922 * 29.69388 * 14 13 12 33 33 H 1.09000 * 110.41433 * 82.18458 * 16 15 14 34 34 H 1.08995 * 110.51374 * 319.78976 * 16 15 14 35 35 H 1.09004 * 110.22536 * 41.38922 * 21 15 14 36 36 H 1.08999 * 112.21841 * 277.81872 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2758 1.1229 0.0000 4 6 1.8372 2.4536 0.0008 5 1 0.7842 2.6753 -0.0907 6 6 2.7643 3.4964 0.1205 7 7 4.0461 3.2359 0.1117 8 14 2.1705 5.2590 0.2924 9 1 2.1091 5.6225 1.7310 10 1 3.1118 6.1691 -0.4082 11 1 0.8186 5.3868 -0.3086 12 7 3.5357 0.7211 0.0044 13 7 3.5374 -0.6805 -0.0015 14 6 4.7216 -1.5432 -0.0018 15 7 5.1168 -1.8318 -1.3869 16 6 6.4429 -2.4998 -1.4339 17 6 6.9533 -2.2506 -2.8694 18 1 7.0957 -3.1122 -3.5216 19 6 6.2101 -0.9854 -3.3451 20 1 5.7989 -0.9052 -4.3514 21 6 5.3140 -0.5416 -2.1689 22 6 7.7268 -0.9598 -3.1459 23 9 8.5272 -0.9208 -4.2928 24 9 8.2204 -0.2558 -2.0424 25 6 2.2537 -1.0923 -0.0005 26 16 1.7193 -2.7187 0.0003 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 4.6883 3.9582 0.1942 31 1 4.4914 -2.4764 0.5123 32 1 5.5395 -1.0377 0.5117 33 1 6.3369 -3.5687 -1.2483 34 1 7.1212 -2.0540 -0.7064 35 1 5.8304 0.1961 -1.5548 36 1 4.3725 -0.1367 -2.5400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328638142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:38 Heat of formation + Delta-G solvation = 21.107766 kcal Electronic energy + Delta-G solvation = -24682.306813 eV Core-core repulsion = 20773.170960 eV Total energy + Delta-G solvation = -3909.135853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84667 -48.52594 -42.66167 -40.45842 -36.76513 -35.73835 -34.38847 -32.32935 -29.81317 -29.48351 -28.28023 -26.78745 -24.40310 -22.96692 -22.71007 -22.08315 -21.73863 -19.45786 -19.02170 -18.51510 -17.87217 -17.49065 -17.42437 -17.06748 -16.58878 -16.46935 -16.21701 -15.50945 -15.25748 -15.09341 -14.79022 -14.63128 -14.41533 -13.97654 -13.75028 -13.60812 -13.46380 -13.25603 -13.12277 -12.87997 -12.74708 -12.63786 -12.42893 -12.00138 -11.93063 -11.72949 -11.38344 -11.00285 -10.92531 -10.68843 -9.75550 -8.81897 -8.64656 -8.55279 -6.98292 0.51648 0.80211 1.26197 1.44101 1.58619 1.59581 1.76149 1.84445 1.87944 2.11406 2.40824 2.78871 2.94282 3.00671 3.07475 3.47801 3.57355 3.78445 3.94463 4.02773 4.14017 4.19448 4.28721 4.46673 4.52560 4.62696 4.70569 4.71116 4.76870 4.82824 4.90588 5.08251 5.24871 5.27334 5.53054 5.85496 6.02997 6.46970 6.55723 7.30968 8.21556 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.005372 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.188828 B = 5210.581761 C = 7200.557615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.517 5.517 3 C 0.355 3.645 4 C -0.449 4.449 5 H 0.119 0.881 6 C 0.038 3.962 7 N -0.773 5.773 8 Si 1.003 2.997 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.245 1.245 12 N -0.370 5.370 13 N -0.380 5.380 14 C 0.315 3.685 15 N -0.519 5.519 16 C 0.062 3.938 17 C -0.123 4.123 18 H 0.180 0.820 19 C -0.164 4.164 20 H 0.156 0.844 21 C 0.081 3.919 22 C 0.209 3.791 23 F -0.156 7.156 24 F -0.173 7.173 25 C 0.469 3.531 26 S -0.732 6.732 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.291 0.709 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -0.962 -4.326 6.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.218 5.218 3 C 0.107 3.893 4 C -0.491 4.491 5 H 0.136 0.864 6 C -0.186 4.186 7 N -0.398 5.398 8 Si 0.822 3.178 9 H -0.190 1.190 10 H -0.198 1.198 11 H -0.168 1.168 12 N -0.203 5.203 13 N -0.165 5.165 14 C 0.104 3.896 15 N -0.245 5.245 16 C -0.065 4.065 17 C -0.142 4.142 18 H 0.197 0.803 19 C -0.184 4.184 20 H 0.174 0.826 21 C -0.046 4.046 22 C 0.172 3.828 23 F -0.137 7.137 24 F -0.154 7.154 25 C 0.098 3.902 26 S -0.608 6.608 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.095 -1.911 -4.505 7.064 hybrid contribution 0.260 2.021 0.478 2.093 sum 5.355 0.110 -4.026 6.701 Atomic orbital electron populations 1.22037 0.73062 1.05206 1.04338 1.46260 1.09687 1.04108 1.61720 1.21662 0.84393 0.89394 0.93895 1.18900 0.97243 0.85393 1.47534 0.86367 1.26837 0.94064 1.05918 0.91731 1.69965 1.03156 1.36855 1.29818 0.84842 0.79774 0.73846 0.79324 1.18970 1.19777 1.16769 1.79320 1.15029 0.83011 1.42938 1.49305 1.03944 1.06846 1.56445 1.22078 0.83268 0.93007 0.91291 1.66757 1.28040 1.18667 1.11076 1.22736 0.87319 1.02627 0.93836 1.24906 0.96485 0.93060 0.99776 0.80276 1.24733 0.89352 1.01681 1.02622 0.82647 1.22862 0.97862 0.91092 0.92760 1.20383 0.87152 0.99678 0.75610 1.93021 1.75484 1.96924 1.48236 1.92992 1.89397 1.80518 1.52493 1.22872 0.85322 0.92337 0.89647 1.92674 1.85280 1.00281 1.82597 0.89959 0.87542 0.89279 0.89853 0.86303 0.91255 0.85073 0.92007 0.93521 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.21 10.66 127.77 1.36 4.57 16 2 N -0.52 -22.77 3.17 -548.31 -1.74 -24.51 16 3 C 0.35 16.91 7.50 133.52 1.00 17.91 16 4 C -0.45 -19.88 8.99 23.16 0.21 -19.67 16 5 H 0.12 4.57 7.08 -2.91 -0.02 4.55 16 6 C 0.04 1.62 5.49 85.28 0.47 2.09 16 7 N -0.77 -36.37 11.92 21.85 0.26 -36.11 16 8 Si 1.00 31.97 29.56 68.60 2.03 33.99 16 9 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16 10 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 11 H -0.24 -7.21 7.11 99.48 0.71 -6.51 16 12 N -0.37 -18.32 10.27 -55.17 -0.57 -18.88 16 13 N -0.38 -17.20 3.24 -359.70 -1.16 -18.36 16 14 C 0.32 11.81 6.04 170.81 1.03 12.84 16 15 N -0.52 -17.27 5.65 -883.39 -4.99 -22.26 16 16 C 0.06 1.48 6.20 86.45 0.54 2.02 16 17 C -0.12 -2.62 7.11 -9.90 -0.07 -2.69 16 18 H 0.18 2.61 8.14 -2.39 -0.02 2.59 16 19 C -0.16 -4.37 7.02 -9.90 -0.07 -4.44 16 20 H 0.16 3.59 8.14 -2.38 -0.02 3.57 16 21 C 0.08 2.87 5.38 85.72 0.46 3.33 16 22 C 0.21 5.39 5.12 30.59 0.16 5.54 16 23 F -0.16 -3.95 17.60 44.97 0.79 -3.16 16 24 F -0.17 -5.33 16.18 44.97 0.73 -4.60 16 25 C 0.47 21.96 7.84 179.06 1.40 23.36 16 26 S -0.73 -35.56 29.50 -56.49 -1.67 -37.23 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.11 3.06 7.27 -2.39 -0.02 3.04 16 29 H 0.09 3.03 7.61 -2.39 -0.02 3.01 16 30 H 0.29 12.48 8.30 -92.70 -0.77 11.71 16 31 H 0.12 4.36 7.64 -2.38 -0.02 4.34 16 32 H 0.07 2.52 7.88 -2.38 -0.02 2.50 16 33 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.06 1.48 7.33 -2.39 -0.02 1.46 16 35 H 0.05 1.89 7.50 -2.39 -0.02 1.87 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -63.37 327.07 1.30 -62.08 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.13 Total: 24.17 kcal Atomic # 6 Polarization: 38.38 SS G_CDS: 6.49 Total: 44.87 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -8.20 Total: -120.13 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.52 Total: -7.76 kcal Atomic # 14 Polarization: 31.97 SS G_CDS: 2.03 Total: 33.99 kcal Atomic # 16 Polarization: -35.56 SS G_CDS: -1.67 Total: -37.23 kcal Total: -63.37 1.30 -62.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328638142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.185 kcal (2) G-P(sol) polarization free energy of solvation -63.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds