Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28450 * 125.05752 * 2 1 4 4 C 1.32000 * 110.49289 * 179.73099 * 3 2 1 5 5 C 1.47633 * 126.27718 * 180.02562 * 4 3 2 6 6 O 1.21483 * 120.00134 * 179.97438 * 5 4 3 7 7 O 1.34716 * 119.99831 * 359.97438 * 5 4 3 8 8 C 1.40949 * 107.45207 * 0.02562 * 4 3 2 9 9 C 1.36771 * 125.05588 * 179.69374 * 2 1 3 10 10 C 1.47154 * 126.64988 * 0.24358 * 9 2 1 11 11 O 1.21618 * 120.00648 * 187.44151 * 10 9 2 12 12 N 1.34781 * 119.99904 * 7.44407 * 10 9 2 13 13 C 1.39149 * 120.00159 * 181.42115 * 12 10 9 14 14 C 1.39698 * 119.57879 * 340.20588 * 13 12 10 15 15 C 1.38651 * 119.49364 * 179.74509 * 14 13 12 16 16 C 1.38352 * 118.67090 * 0.51429 * 15 14 13 17 17 C 1.40579 * 119.13372 * 359.75254 * 16 15 14 18 18 C 1.41333 * 119.78447 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00086 * 8.46062 * 18 17 16 20 20 C 1.40027 * 120.00350 * 188.45504 * 18 17 16 21 21 N 1.30746 * 119.99713 * 8.45476 * 20 18 17 22 22 Si 1.86800 * 120.00379 * 188.45673 * 20 18 17 23 23 H 1.48501 * 109.47092 * 94.98157 * 22 20 18 24 24 H 1.48500 * 109.47151 * 214.97915 * 22 20 18 25 25 H 1.48494 * 109.46931 * 334.98453 * 22 20 18 26 26 N 1.31925 * 119.57787 * 160.47538 * 13 12 10 27 27 H 1.08993 * 109.47145 * 98.15684 * 1 2 3 28 28 H 1.08998 * 109.46943 * 218.15933 * 1 2 3 29 29 H 1.08999 * 109.46767 * 338.15714 * 1 2 3 30 30 H 0.96708 * 117.00158 * 179.97438 * 7 5 4 31 31 H 1.08003 * 127.27277 * 180.02562 * 8 4 3 32 32 H 0.97008 * 119.99611 * 1.42542 * 12 10 9 33 33 H 1.08000 * 120.25420 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.66215 * 180.26267 * 15 14 13 35 35 H 1.08006 * 120.43060 * 179.76708 * 16 15 14 36 36 H 0.96997 * 120.00125 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2029 1.0515 0.0000 4 6 3.4805 0.7195 0.0058 5 6 4.6252 1.6518 0.0082 6 8 5.7605 1.2196 0.0142 7 8 4.4108 2.9817 0.0038 8 6 3.5515 -0.6882 0.0093 9 6 2.2506 -1.1196 0.0060 10 6 1.7887 -2.5167 0.0084 11 8 2.5889 -3.4216 0.1502 12 7 0.4788 -2.7937 -0.1465 13 6 0.0381 -4.1132 -0.1146 14 6 0.9476 -5.1496 -0.3388 15 6 0.5077 -6.4639 -0.3014 16 6 -0.8309 -6.7090 -0.0518 17 6 -1.6976 -5.6226 0.1602 18 6 -3.0677 -5.8571 0.4158 19 1 -3.4212 -6.8638 0.5835 20 6 -3.9669 -4.7843 0.4518 21 7 -3.5757 -3.5910 0.0881 22 14 -5.7254 -5.0580 1.0195 23 1 -5.8344 -4.7374 2.4653 24 1 -6.6377 -4.1771 0.2470 25 1 -6.1019 -6.4772 0.7975 26 7 -1.2343 -4.3693 0.1216 27 1 -0.3633 -0.1458 -1.0172 28 1 -0.3633 -0.8080 0.6349 29 1 -0.3633 0.9539 0.3824 30 1 5.1915 3.5524 0.0060 31 1 4.4427 -1.2981 0.0146 32 1 -0.1567 -2.0731 -0.2804 33 1 1.9864 -4.9289 -0.5353 34 1 1.1954 -7.2799 -0.4678 35 1 -1.2050 -7.7217 -0.0200 36 1 -4.1986 -2.8479 0.1126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574466518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = 16.334682 kcal Electronic energy + Delta-G solvation = -25153.513816 eV Core-core repulsion = 21219.814550 eV Total energy + Delta-G solvation = -3933.699266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.00653 -40.15600 -39.81097 -37.81188 -36.30481 -35.00437 -33.80216 -33.19711 -31.46299 -30.56546 -29.25255 -28.26181 -25.76982 -24.58069 -23.70352 -21.84657 -21.30157 -21.24247 -20.18205 -18.47564 -17.95862 -17.58420 -16.83334 -16.62038 -16.48392 -15.72304 -15.62931 -15.01613 -14.83134 -14.48495 -14.39363 -13.95263 -13.73275 -13.58942 -13.16985 -12.99761 -12.68119 -12.39270 -12.10505 -11.79787 -11.49482 -11.38565 -11.22790 -11.08852 -11.04692 -10.80698 -10.25477 -10.07585 -9.61925 -9.49498 -9.35686 -9.21262 -8.21420 -7.86472 -7.32570 -6.63080 -4.62512 0.93347 1.20209 1.92098 2.51665 2.70840 2.79155 2.89615 3.01027 3.04278 3.12390 3.18973 3.37972 3.84772 3.99253 4.38265 4.62752 4.76595 4.80780 5.03291 5.17187 5.19981 5.43348 5.73776 5.99893 6.02078 6.13027 6.16090 6.21862 6.58769 6.63564 6.68318 7.00575 7.26769 7.28910 7.37079 7.63246 7.72057 7.74105 7.93976 8.12983 8.31137 8.55967 8.79984 9.84124 10.15793 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.003195 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.466835 B = 8762.034094 C =10048.997933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.256 5.256 3 N -0.205 5.205 4 C -0.023 4.023 5 C 0.580 3.420 6 O -0.504 6.504 7 O -0.501 6.501 8 C -0.092 4.092 9 C -0.031 4.031 10 C 0.587 3.413 11 O -0.493 6.493 12 N -0.644 5.644 13 C 0.350 3.650 14 C -0.312 4.312 15 C -0.049 4.049 16 C -0.282 4.282 17 C 0.282 3.718 18 C -0.436 4.436 19 H 0.087 0.913 20 C 0.076 3.924 21 N -0.730 5.730 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.261 1.261 26 N -0.510 5.510 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.415 0.585 31 H 0.180 0.820 32 H 0.404 0.596 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 11.384 -0.710 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.050 5.050 3 N -0.047 5.047 4 C -0.178 4.178 5 C 0.421 3.579 6 O -0.390 6.390 7 O -0.312 6.312 8 C -0.120 4.120 9 C -0.155 4.155 10 C 0.371 3.629 11 O -0.366 6.366 12 N -0.293 5.293 13 C 0.116 3.884 14 C -0.336 4.336 15 C -0.073 4.073 16 C -0.305 4.305 17 C 0.156 3.844 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.148 4.148 21 N -0.352 5.352 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.185 1.185 26 N -0.229 5.229 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.274 0.726 31 H 0.197 0.803 32 H 0.245 0.755 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.814 12.152 -0.512 13.080 hybrid contribution 0.284 -0.615 0.065 0.680 sum 5.097 11.537 -0.448 12.621 Atomic orbital electron populations 1.22740 0.71735 1.07338 1.06015 1.46072 1.08279 1.02312 1.48335 1.73652 1.02735 1.13251 1.15049 1.20456 0.89788 0.92168 1.15353 1.19103 0.86284 0.80630 0.71870 1.90939 1.23053 1.78643 1.46388 1.84636 1.43420 1.17681 1.85470 1.21804 0.96652 0.92263 1.01323 1.21539 0.91487 0.88663 1.13825 1.16746 0.82595 0.85536 0.78000 1.90756 1.54092 1.43879 1.47859 1.43543 1.07614 1.08969 1.69147 1.18376 0.91680 0.82229 0.96076 1.21800 1.01309 0.92108 1.18422 1.20864 0.94950 0.95443 0.96061 1.21782 0.94344 0.98998 1.15346 1.18137 0.93203 0.84977 0.88105 1.19569 0.90634 0.94761 1.41774 0.89492 1.25995 1.00801 0.94703 0.93347 1.70012 1.35316 1.00283 1.29609 0.86299 0.81306 0.79704 0.79432 1.19441 1.20171 1.18474 1.67887 1.10131 1.23502 1.21344 0.87829 0.87079 0.86630 0.72625 0.80281 0.75545 0.84464 0.88009 0.87970 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 9.65 59.85 0.58 1.16 16 2 N -0.26 -3.24 3.75 -64.20 -0.24 -3.48 16 3 N -0.21 -2.71 11.97 33.32 0.40 -2.32 16 4 C -0.02 -0.32 7.13 -82.93 -0.59 -0.91 16 5 C 0.58 7.05 8.34 34.57 0.29 7.34 16 6 O -0.50 -7.12 17.70 -19.25 -0.34 -7.46 16 7 O -0.50 -4.53 13.44 -40.53 -0.54 -5.08 16 8 C -0.09 -1.30 10.56 -38.99 -0.41 -1.71 16 9 C -0.03 -0.45 6.90 -82.48 -0.57 -1.02 16 10 C 0.59 10.44 7.67 -12.64 -0.10 10.34 16 11 O -0.49 -10.07 13.56 5.26 0.07 -10.00 16 12 N -0.64 -12.03 5.11 -12.46 -0.06 -12.09 16 13 C 0.35 8.14 7.51 -155.07 -1.17 6.98 16 14 C -0.31 -7.23 8.89 -38.88 -0.35 -7.58 16 15 C -0.05 -1.09 10.15 -39.39 -0.40 -1.49 16 16 C -0.28 -6.73 9.83 -38.66 -0.38 -7.11 16 17 C 0.28 7.35 6.51 -85.00 -0.55 6.80 16 18 C -0.44 -10.99 9.13 -37.74 -0.34 -11.34 16 19 H 0.09 2.07 7.86 -52.48 -0.41 1.65 16 20 C 0.08 1.80 5.46 -17.34 -0.09 1.70 16 21 N -0.73 -17.49 11.60 55.55 0.64 -16.85 16 22 Si 0.91 17.42 29.57 -169.99 -5.03 12.40 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.77 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 N -0.51 -13.00 8.04 -10.28 -0.08 -13.09 16 27 H 0.10 0.83 7.99 -51.93 -0.42 0.42 16 28 H 0.11 1.16 6.18 -51.93 -0.32 0.84 16 29 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.42 1.53 9.11 45.56 0.42 1.94 16 31 H 0.18 2.37 8.06 -52.48 -0.42 1.94 16 32 H 0.40 6.48 4.71 -40.82 -0.19 6.29 16 33 H 0.14 3.13 5.15 -52.99 -0.27 2.86 16 34 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 35 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 36 H 0.27 5.83 8.29 -40.82 -0.34 5.49 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -32.44 325.40 -6.39 -38.83 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -2.02 Total: 11.07 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -4.09 Total: 3.16 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.66 Total: -47.82 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.81 Total: -22.54 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.44 -6.39 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574466518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.168 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds