Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28451 * 125.06352 * 2 1 4 4 C 1.32000 * 110.49693 * 179.73697 * 3 2 1 5 5 C 1.47629 * 126.27664 * 180.02562 * 4 3 2 6 6 O 1.21483 * 120.00410 * 179.97438 * 5 4 3 7 7 O 1.34724 * 119.99860 * 359.97438 * 5 4 3 8 8 C 1.40950 * 107.44905 * 0.02562 * 4 3 2 9 9 C 1.36774 * 125.06027 * 179.69696 * 2 1 3 10 10 C 1.47167 * 126.63871 * 0.24670 * 9 2 1 11 11 O 1.21627 * 119.99894 * 187.49186 * 10 9 2 12 12 N 1.34772 * 120.00402 * 7.48958 * 10 9 2 13 13 C 1.39369 * 120.00220 * 181.62324 * 12 10 9 14 14 C 1.38623 * 119.58337 * 340.77013 * 13 12 10 15 15 C 1.40796 * 118.79633 * 179.78252 * 14 13 12 16 16 C 1.41540 * 121.00072 * 180.24297 * 15 14 13 17 17 H 1.07996 * 120.00765 * 204.21259 * 16 15 14 18 18 C 1.40039 * 119.99847 * 24.20745 * 16 15 14 19 19 N 1.30744 * 119.99840 * 12.95558 * 18 16 15 20 20 Si 1.86796 * 120.00008 * 192.95272 * 18 16 15 21 21 H 1.48506 * 109.47176 * 90.00151 * 20 18 16 22 22 H 1.48499 * 109.47059 * 209.99895 * 20 18 16 23 23 H 1.48498 * 109.47245 * 330.00165 * 20 18 16 24 24 C 1.41180 * 118.00650 * 0.48261 * 15 14 13 25 25 C 1.37586 * 119.02372 * 359.75889 * 24 15 14 26 26 N 1.32087 * 121.10970 * 359.97438 * 25 24 15 27 27 H 1.08997 * 109.47827 * 97.76391 * 1 2 3 28 28 H 1.09006 * 109.47402 * 217.77047 * 1 2 3 29 29 H 1.09003 * 109.47098 * 337.76354 * 1 2 3 30 30 H 0.96701 * 116.99948 * 179.97438 * 7 5 4 31 31 H 1.08002 * 127.26904 * 180.02562 * 8 4 3 32 32 H 0.97006 * 120.00405 * 1.62383 * 12 10 9 33 33 H 1.08000 * 120.60091 * 0.02562 * 14 13 12 34 34 H 0.96997 * 120.00222 * 180.02562 * 19 18 16 35 35 H 1.08008 * 120.49146 * 179.78206 * 24 15 14 36 36 H 1.07998 * 119.44796 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2029 1.0514 0.0000 4 6 3.4804 0.7194 0.0057 5 6 4.6252 1.6516 0.0081 6 8 5.7605 1.2195 0.0139 7 8 4.4108 2.9817 0.0038 8 6 3.5513 -0.6883 0.0091 9 6 2.2506 -1.1195 0.0059 10 6 1.7885 -2.5168 0.0082 11 8 2.5886 -3.4217 0.1509 12 7 0.4788 -2.7937 -0.1477 13 6 0.0368 -4.1150 -0.1117 14 6 0.9413 -5.1451 -0.3174 15 6 0.4777 -6.4738 -0.2728 16 6 1.3615 -7.5613 -0.4713 17 1 0.9810 -8.5098 -0.8205 18 6 2.7296 -7.4075 -0.2148 19 7 3.1582 -6.3604 0.4404 20 14 3.9421 -8.6985 -0.8086 21 1 4.4116 -8.3462 -2.1728 22 1 5.1027 -8.7501 0.1163 23 1 3.2760 -10.0252 -0.8416 24 6 -0.8963 -6.6887 -0.0294 25 6 -1.7190 -5.6019 0.1579 26 7 -1.2435 -4.3704 0.1137 27 1 -0.3635 -0.1388 -1.0182 28 1 -0.3634 -0.8124 0.6295 29 1 -0.3633 0.9513 0.3889 30 1 5.1915 3.5522 0.0059 31 1 4.4426 -1.2983 0.0142 32 1 -0.1563 -2.0735 -0.2851 33 1 1.9835 -4.9324 -0.5045 34 1 4.1058 -6.2536 0.6177 35 1 -1.2957 -7.6914 0.0097 36 1 -2.7711 -5.7584 0.3450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574467164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = 13.145429 kcal Electronic energy + Delta-G solvation = -25409.510162 eV Core-core repulsion = 21475.672600 eV Total energy + Delta-G solvation = -3933.837562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.94429 -40.08958 -39.70639 -37.75225 -36.26020 -34.95783 -34.04571 -33.24639 -31.38791 -30.56677 -28.57988 -28.23879 -25.96345 -24.53896 -23.60728 -22.08665 -21.19272 -20.97111 -20.13983 -18.42643 -17.90402 -17.72967 -16.79734 -16.47585 -16.05193 -15.60050 -15.50453 -15.31520 -14.63634 -14.30142 -14.25665 -13.90706 -13.71706 -13.54293 -13.21003 -12.85584 -12.66715 -12.53919 -12.37269 -11.75668 -11.46692 -11.38276 -11.20781 -11.03781 -11.00380 -10.54307 -10.21095 -9.87931 -9.54105 -9.39259 -9.38089 -8.95684 -8.18669 -7.97610 -7.18047 -6.68349 -4.56392 0.99683 1.30706 1.94888 2.61094 2.75975 2.83376 2.93231 3.07276 3.10126 3.18811 3.25480 3.51234 3.90323 4.00716 4.45866 4.67448 4.72391 4.72726 5.01693 5.16268 5.25506 5.51808 5.62540 5.80309 6.08845 6.19427 6.25024 6.40101 6.62811 6.74858 6.96264 7.11988 7.29958 7.40460 7.52672 7.68511 7.76273 7.85178 8.25418 8.40725 8.58595 8.76180 8.84068 9.44876 10.14643 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003886 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.827855 B = 7203.005896 C = 9029.230221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.260 5.260 3 N -0.210 5.210 4 C -0.021 4.021 5 C 0.579 3.421 6 O -0.503 6.503 7 O -0.502 6.502 8 C -0.093 4.093 9 C -0.025 4.025 10 C 0.569 3.431 11 O -0.449 6.449 12 N -0.652 5.652 13 C 0.310 3.690 14 C -0.220 4.220 15 C 0.132 3.868 16 C -0.449 4.449 17 H 0.081 0.919 18 C 0.071 3.929 19 N -0.752 5.752 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.289 4.289 25 C 0.122 3.878 26 N -0.607 5.607 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.415 0.585 31 H 0.180 0.820 32 H 0.395 0.605 33 H 0.177 0.823 34 H 0.286 0.714 35 H 0.102 0.898 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 14.103 -1.213 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.055 5.055 3 N -0.051 5.051 4 C -0.176 4.176 5 C 0.420 3.580 6 O -0.388 6.388 7 O -0.313 6.313 8 C -0.121 4.121 9 C -0.149 4.149 10 C 0.352 3.648 11 O -0.317 6.317 12 N -0.301 5.301 13 C 0.089 3.911 14 C -0.244 4.244 15 C 0.123 3.877 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.152 4.152 19 N -0.375 5.375 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.313 4.313 25 C -0.033 4.033 26 N -0.328 5.328 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.273 0.727 31 H 0.198 0.802 32 H 0.234 0.766 33 H 0.194 0.806 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.649 14.809 -0.866 14.925 hybrid contribution 1.574 -1.128 -0.308 1.961 sum -0.074 13.681 -1.174 13.731 Atomic orbital electron populations 1.22650 0.72353 1.06993 1.05577 1.45997 1.08048 1.02472 1.48967 1.73615 1.02761 1.13268 1.15449 1.20448 0.89729 0.92193 1.15230 1.19118 0.86331 0.80596 0.71935 1.90946 1.23055 1.78610 1.46238 1.84632 1.43406 1.17721 1.85553 1.21831 0.96836 0.92193 1.01286 1.21691 0.91442 0.88665 1.13131 1.16862 0.82915 0.85639 0.79372 1.90998 1.53256 1.42707 1.44789 1.43414 1.07731 1.08224 1.70748 1.18025 0.90634 0.82573 0.99841 1.23036 1.03002 0.90770 1.07640 1.17804 0.91042 0.92759 0.86069 1.19611 0.91436 0.98040 1.38913 0.90043 1.26043 0.99525 0.96492 0.93108 1.69787 1.17346 1.25180 1.25184 0.86270 0.79536 0.81180 0.79546 1.19202 1.20104 1.18615 1.21837 0.95888 0.98007 1.15573 1.21471 0.97688 0.87135 0.96960 1.66525 1.14125 1.24735 1.27372 0.88156 0.87462 0.86799 0.72671 0.80237 0.76608 0.80643 0.90289 0.88028 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 9.66 59.84 0.58 1.11 16 2 N -0.26 -3.28 3.75 -64.20 -0.24 -3.52 16 3 N -0.21 -2.80 11.97 33.32 0.40 -2.40 16 4 C -0.02 -0.30 7.13 -82.94 -0.59 -0.89 16 5 C 0.58 7.40 8.34 34.56 0.29 7.69 16 6 O -0.50 -7.52 17.70 -19.25 -0.34 -7.86 16 7 O -0.50 -4.72 13.44 -40.56 -0.54 -5.27 16 8 C -0.09 -1.42 10.56 -38.99 -0.41 -1.83 16 9 C -0.02 -0.38 6.90 -82.48 -0.57 -0.95 16 10 C 0.57 10.76 7.67 -12.64 -0.10 10.66 16 11 O -0.45 -10.32 13.39 5.25 0.07 -10.25 16 12 N -0.65 -12.03 5.11 -12.55 -0.06 -12.10 16 13 C 0.31 7.18 7.52 -154.78 -1.16 6.02 16 14 C -0.22 -5.75 7.56 -38.47 -0.29 -6.04 16 15 C 0.13 3.48 5.61 -106.56 -0.60 2.89 16 16 C -0.45 -11.70 9.14 -37.65 -0.34 -12.05 16 17 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 18 C 0.07 1.76 5.27 -17.34 -0.09 1.67 16 19 N -0.75 -19.55 10.57 55.55 0.59 -18.96 16 20 Si 0.91 18.53 29.58 -169.99 -5.03 13.50 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.29 -6.88 9.90 -38.70 -0.38 -7.26 16 25 C 0.12 2.68 11.15 -17.68 -0.20 2.48 16 26 N -0.61 -13.68 10.36 -12.54 -0.13 -13.81 16 27 H 0.10 0.64 8.01 -51.93 -0.42 0.23 16 28 H 0.11 0.92 6.16 -51.93 -0.32 0.60 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.41 1.68 9.11 45.56 0.42 2.10 16 31 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 32 H 0.40 5.69 4.72 -40.82 -0.19 5.50 16 33 H 0.18 4.80 3.16 -53.15 -0.17 4.64 16 34 H 0.29 6.90 8.29 -40.82 -0.34 6.56 16 35 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -33.69 323.25 -6.21 -39.90 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -1.92 Total: 12.41 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.87 Total: 3.48 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.55 Total: -50.79 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.82 Total: -23.38 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.69 -6.21 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574467164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.047 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds