Wall clock time and date at job start Tue Mar 31 2020 11:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99804 * 2 1 4 4 C 1.50698 * 109.46968 * 270.00290 * 3 2 1 5 5 C 1.33392 * 125.20552 * 90.00003 * 4 3 2 6 6 C 1.38428 * 114.92283 * 179.97438 * 5 4 3 7 7 C 1.33393 * 114.91779 * 0.02562 * 6 5 4 8 8 S 1.75883 * 109.59380 * 359.75212 * 7 6 5 9 9 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 10 10 O 1.21589 * 119.99629 * 179.97438 * 9 2 1 11 11 N 1.34770 * 120.00178 * 359.97438 * 9 2 1 12 12 C 1.39956 * 119.99722 * 174.86323 * 11 9 2 13 13 C 1.39294 * 119.94251 * 145.75896 * 12 11 9 14 14 C 1.38492 * 120.42543 * 180.02562 * 13 12 11 15 15 C 1.37682 * 120.32147 * 359.97438 * 14 13 12 16 16 C 1.40747 * 119.88423 * 359.97438 * 15 14 13 17 17 C 1.41406 * 120.20845 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00064 * 205.17389 * 17 16 15 19 19 C 1.39941 * 119.99927 * 25.17971 * 17 16 15 20 20 N 1.30822 * 120.00047 * 16.79279 * 19 17 16 21 21 Si 1.86799 * 119.99604 * 196.79464 * 19 17 16 22 22 H 1.48497 * 109.47580 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47343 * 120.00030 * 21 19 17 24 24 H 1.48507 * 109.46787 * 239.99621 * 21 19 17 25 25 C 1.38233 * 119.94976 * 325.48221 * 12 11 9 26 26 H 1.08997 * 109.46907 * 89.99747 * 1 2 3 27 27 H 1.08994 * 109.46751 * 210.00210 * 1 2 3 28 28 H 1.08999 * 109.46799 * 329.99541 * 1 2 3 29 29 H 1.08997 * 109.46900 * 150.00083 * 3 2 1 30 30 H 1.08997 * 109.46965 * 30.00152 * 3 2 1 31 31 H 1.07993 * 122.53619 * 359.95863 * 5 4 3 32 32 H 1.07988 * 122.53950 * 180.02562 * 6 5 4 33 33 H 1.08000 * 125.20099 * 180.02562 * 7 6 5 34 34 H 0.97000 * 120.00209 * 354.86289 * 11 9 2 35 35 H 1.07998 * 119.78668 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.83692 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.05798 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99885 * 180.02562 * 20 19 17 39 39 H 1.08006 * 120.15652 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6328 2.4708 -2.1458 6 6 2.0740 2.7409 -3.4298 7 6 3.2479 2.1928 -3.7476 8 16 3.8654 1.2836 -2.3745 9 6 2.1389 -1.1672 -0.0005 10 8 3.3548 -1.1672 -0.0010 11 7 1.4651 -2.3343 -0.0005 12 6 2.1606 -3.5439 -0.1096 13 6 1.6967 -4.6753 0.5575 14 6 2.3775 -5.8772 0.4570 15 6 3.5210 -5.9668 -0.3046 16 6 4.0009 -4.8321 -0.9852 17 6 5.1750 -4.9162 -1.7689 18 1 5.7671 -4.0316 -1.9512 19 6 5.5695 -6.1457 -2.3083 20 7 4.7153 -7.1342 -2.3771 21 14 7.3159 -6.3755 -2.9301 22 1 8.0784 -5.1153 -2.7414 23 1 7.9719 -7.4700 -2.1706 24 1 7.2856 -6.7237 -4.3735 25 6 3.3036 -3.6153 -0.8837 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.1499 1.1384 0.5138 30 1 1.6085 2.0284 0.5138 31 1 0.6988 2.8518 -1.7603 32 1 1.5106 3.3492 -4.1216 33 1 3.7453 2.2957 -4.7008 34 1 0.4980 -2.3361 0.0751 35 1 0.8005 -4.6149 1.1570 36 1 2.0091 -6.7485 0.9779 37 1 4.0487 -6.9060 -0.3797 38 1 4.9889 -7.9865 -2.7507 39 1 3.6618 -2.7396 -1.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624873813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:21 Heat of formation + Delta-G solvation = 40.914966 kcal Electronic energy + Delta-G solvation = -23273.082011 eV Core-core repulsion = 19886.741841 eV Total energy + Delta-G solvation = -3386.340170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14899 -37.99912 -37.24272 -35.31796 -34.45376 -33.01942 -30.81873 -29.75423 -27.99922 -27.26496 -25.51702 -25.16276 -23.17199 -21.29396 -20.81770 -19.52616 -19.10872 -18.03472 -17.31699 -17.22815 -15.99339 -15.58901 -15.27874 -15.01732 -14.63568 -14.35060 -13.93451 -13.52100 -13.07633 -12.96943 -12.83383 -12.81614 -12.70210 -12.45762 -12.36648 -12.06642 -11.59206 -11.41328 -11.14885 -11.06952 -10.85355 -10.51993 -10.40694 -10.12418 -9.65511 -9.44718 -9.06213 -8.96870 -8.80089 -8.58229 -8.35475 -7.38035 -6.83094 -6.64778 -4.27181 0.98764 1.75244 2.16337 2.59631 2.79433 2.94613 3.10952 3.13426 3.20631 3.25546 3.71683 4.01285 4.25589 4.70866 4.79333 4.94273 5.04609 5.07436 5.29267 5.43770 5.52224 5.55663 5.63644 5.78419 6.06964 6.27090 6.28594 6.38339 6.45403 6.51800 6.81836 6.85197 7.10579 7.16029 7.29319 7.36145 7.72819 7.85979 8.05242 8.17743 8.30151 8.43897 8.72857 8.94957 9.03586 9.08638 10.27517 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004087 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.512340 B = 6848.596544 C = 8528.794383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.634 5.634 3 C 0.205 3.795 4 C -0.200 4.200 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.228 4.228 8 S 0.156 5.844 9 C 0.700 3.300 10 O -0.558 6.558 11 N -0.680 5.680 12 C 0.168 3.832 13 C -0.263 4.263 14 C -0.092 4.092 15 C -0.173 4.173 16 C 0.120 3.880 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.207 4.207 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.160 0.840 34 H 0.393 0.607 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.278 0.722 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 15.929 1.083 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.372 5.372 3 C 0.080 3.920 4 C -0.319 4.319 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.364 4.364 8 S 0.421 5.579 9 C 0.402 3.598 10 O -0.433 6.433 11 N -0.328 5.328 12 C 0.076 3.924 13 C -0.285 4.285 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.117 3.883 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.422 5.422 21 Si 0.730 3.270 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.201 1.201 25 C -0.229 4.229 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.229 0.771 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.076 14.850 1.253 16.094 hybrid contribution -1.288 0.639 -0.775 1.634 sum -7.364 15.489 0.477 17.157 Atomic orbital electron populations 1.21703 0.80084 1.02692 1.01740 1.47113 1.06137 1.04596 1.79379 1.19634 0.98523 0.84103 0.89732 1.25068 0.99780 1.05093 1.01993 1.20029 1.00889 1.01455 0.94241 1.20075 0.96915 1.03426 0.97024 1.25834 1.01527 1.05237 1.03820 1.85034 1.20558 1.48596 1.03700 1.15915 0.85575 0.80171 0.78165 1.90971 1.11020 1.85504 1.55790 1.42744 1.09415 1.04134 1.76468 1.17245 0.94778 0.82671 0.97746 1.19995 1.04749 0.93728 1.10025 1.20434 0.96286 0.95186 0.99211 1.21332 0.97967 1.00030 0.99994 1.17490 0.91241 0.90214 0.89328 1.19610 1.07043 0.94713 1.27305 0.90363 1.25887 0.98683 0.95368 0.94155 1.69838 1.34608 1.03589 1.34192 0.86299 0.82645 0.79436 0.78580 1.18352 1.19744 1.20087 1.21000 0.97746 0.99139 1.05021 0.92758 0.91470 0.90942 0.88653 0.88910 0.84809 0.84837 0.82244 0.77150 0.89490 0.89125 0.86378 0.91092 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.29 59.85 0.62 1.37 16 2 N -0.63 -8.62 2.86 -188.74 -0.54 -9.16 16 3 C 0.21 2.48 5.94 -5.19 -0.03 2.45 16 4 C -0.20 -2.56 6.09 -36.00 -0.22 -2.78 16 5 C -0.13 -1.47 10.05 -41.21 -0.41 -1.88 16 6 C -0.14 -1.57 10.18 -41.20 -0.42 -1.99 16 7 C -0.23 -2.73 11.23 29.04 0.33 -2.40 16 8 S 0.16 2.28 23.33 -107.50 -2.51 -0.23 16 9 C 0.70 13.09 8.01 -86.93 -0.70 12.40 16 10 O -0.56 -12.71 13.68 5.29 0.07 -12.64 16 11 N -0.68 -12.72 5.22 -14.27 -0.07 -12.80 16 12 C 0.17 3.91 6.25 -83.76 -0.52 3.39 16 13 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 14 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 15 C -0.17 -4.64 8.69 -38.84 -0.34 -4.98 16 16 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 17 C -0.46 -12.79 9.05 -37.74 -0.34 -13.13 16 18 H 0.08 2.17 7.90 -52.49 -0.41 1.76 16 19 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 20 N -0.80 -21.08 10.94 55.55 0.61 -20.47 16 21 Si 0.91 19.44 29.59 -169.99 -5.03 14.41 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 C -0.21 -5.52 8.39 -38.69 -0.32 -5.84 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.57 6.29 -51.93 -0.33 0.24 16 28 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 29 H 0.10 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.09 0.78 7.89 -51.93 -0.41 0.37 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.39 5.83 6.51 -40.82 -0.27 5.57 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.11 2.96 6.48 -52.48 -0.34 2.62 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -32.35 345.09 -10.66 -43.01 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.55 Total: 10.33 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.84 Total: -17.65 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.01 Total: -42.43 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.51 Total: -0.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.35 -10.66 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624873813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.924 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds