Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99804 * 2 1 4 4 C 1.50698 * 109.46968 * 270.00290 * 3 2 1 5 5 C 1.33392 * 125.20552 * 90.00003 * 4 3 2 6 6 C 1.38428 * 114.92283 * 179.97438 * 5 4 3 7 7 C 1.33393 * 114.91779 * 0.02562 * 6 5 4 8 8 S 1.75883 * 109.59380 * 359.75212 * 7 6 5 9 9 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 10 10 O 1.21589 * 119.99629 * 179.97438 * 9 2 1 11 11 N 1.34770 * 120.00178 * 359.97438 * 9 2 1 12 12 C 1.39956 * 119.99722 * 174.86323 * 11 9 2 13 13 C 1.39294 * 119.94251 * 145.75896 * 12 11 9 14 14 C 1.38492 * 120.42543 * 180.02562 * 13 12 11 15 15 C 1.37682 * 120.32147 * 359.97438 * 14 13 12 16 16 C 1.40747 * 119.88423 * 359.97438 * 15 14 13 17 17 C 1.41406 * 120.20845 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00064 * 205.17389 * 17 16 15 19 19 C 1.39941 * 119.99927 * 25.17971 * 17 16 15 20 20 N 1.30822 * 120.00047 * 16.79279 * 19 17 16 21 21 Si 1.86799 * 119.99604 * 196.79464 * 19 17 16 22 22 H 1.48497 * 109.47580 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47343 * 120.00030 * 21 19 17 24 24 H 1.48507 * 109.46787 * 239.99621 * 21 19 17 25 25 C 1.38233 * 119.94976 * 325.48221 * 12 11 9 26 26 H 1.08997 * 109.46907 * 89.99747 * 1 2 3 27 27 H 1.08994 * 109.46751 * 210.00210 * 1 2 3 28 28 H 1.08999 * 109.46799 * 329.99541 * 1 2 3 29 29 H 1.08997 * 109.46900 * 150.00083 * 3 2 1 30 30 H 1.08997 * 109.46965 * 30.00152 * 3 2 1 31 31 H 1.07993 * 122.53619 * 359.95863 * 5 4 3 32 32 H 1.07988 * 122.53950 * 180.02562 * 6 5 4 33 33 H 1.08000 * 125.20099 * 180.02562 * 7 6 5 34 34 H 0.97000 * 120.00209 * 354.86289 * 11 9 2 35 35 H 1.07998 * 119.78668 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.83692 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.05798 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99885 * 180.02562 * 20 19 17 39 39 H 1.08006 * 120.15652 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6328 2.4708 -2.1458 6 6 2.0740 2.7409 -3.4298 7 6 3.2479 2.1928 -3.7476 8 16 3.8654 1.2836 -2.3745 9 6 2.1389 -1.1672 -0.0005 10 8 3.3548 -1.1672 -0.0010 11 7 1.4651 -2.3343 -0.0005 12 6 2.1606 -3.5439 -0.1096 13 6 1.6967 -4.6753 0.5575 14 6 2.3775 -5.8772 0.4570 15 6 3.5210 -5.9668 -0.3046 16 6 4.0009 -4.8321 -0.9852 17 6 5.1750 -4.9162 -1.7689 18 1 5.7671 -4.0316 -1.9512 19 6 5.5695 -6.1457 -2.3083 20 7 4.7153 -7.1342 -2.3771 21 14 7.3159 -6.3755 -2.9301 22 1 8.0784 -5.1153 -2.7414 23 1 7.9719 -7.4700 -2.1706 24 1 7.2856 -6.7237 -4.3735 25 6 3.3036 -3.6153 -0.8837 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.1499 1.1384 0.5138 30 1 1.6085 2.0284 0.5138 31 1 0.6988 2.8518 -1.7603 32 1 1.5106 3.3492 -4.1216 33 1 3.7453 2.2957 -4.7008 34 1 0.4980 -2.3361 0.0751 35 1 0.8005 -4.6149 1.1570 36 1 2.0091 -6.7485 0.9779 37 1 4.0487 -6.9060 -0.3797 38 1 4.9889 -7.9865 -2.7507 39 1 3.6618 -2.7396 -1.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624873813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = 22.088252 kcal Electronic energy + Delta-G solvation = -23273.898399 eV Core-core repulsion = 19886.741841 eV Total energy + Delta-G solvation = -3387.156558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57872 -39.37541 -38.62547 -36.57765 -36.20370 -34.83442 -31.89137 -31.72677 -29.71883 -28.13378 -27.26971 -26.52733 -24.22672 -22.99408 -22.66490 -20.91699 -20.21847 -19.63398 -18.77279 -18.30898 -17.55669 -17.07410 -16.69328 -16.43759 -16.26081 -15.88470 -15.25999 -14.99890 -14.70660 -14.36071 -14.00120 -13.90605 -13.74978 -13.56211 -13.52905 -13.32879 -13.15469 -13.00270 -12.89893 -12.76882 -12.33158 -12.17543 -11.94407 -11.53843 -11.49507 -11.21410 -10.95700 -10.76043 -9.86403 -9.61220 -9.44304 -9.37639 -8.71324 -8.57162 -6.35944 0.04074 0.76359 0.93486 1.04408 1.22118 1.34882 1.46945 1.50334 1.61343 1.98558 2.19406 2.21395 2.74778 3.03375 3.75355 3.86988 4.09824 4.23378 4.29107 4.48294 4.51109 4.64863 4.67297 4.70970 4.75973 4.88765 5.05453 5.11431 5.13896 5.14909 5.21892 5.33618 5.34992 5.49791 5.64888 5.71968 5.83439 6.03189 6.11503 6.14917 6.38298 6.70202 6.95226 6.96946 7.03579 7.59212 8.33953 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004087 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.512340 B = 6848.596544 C = 8528.794383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.622 5.622 3 C 0.203 3.797 4 C -0.205 4.205 5 C -0.117 4.117 6 C -0.139 4.139 7 C -0.223 4.223 8 S 0.041 5.959 9 C 0.691 3.309 10 O -0.608 6.608 11 N -0.671 5.671 12 C 0.176 3.824 13 C -0.251 4.251 14 C -0.090 4.090 15 C -0.199 4.199 16 C 0.090 3.910 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.040 3.960 20 N -0.822 5.822 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.257 1.257 24 H -0.261 1.261 25 C -0.234 4.234 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.289 0.711 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 17.282 1.571 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.359 5.359 3 C 0.078 3.922 4 C -0.324 4.324 5 C -0.148 4.148 6 C -0.170 4.170 7 C -0.359 4.359 8 S 0.305 5.695 9 C 0.393 3.607 10 O -0.486 6.486 11 N -0.321 5.321 12 C 0.082 3.918 13 C -0.273 4.273 14 C -0.108 4.108 15 C -0.219 4.219 16 C 0.088 3.912 17 C -0.532 4.532 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.448 5.448 21 Si 0.799 3.201 22 H -0.192 1.192 23 H -0.181 1.181 24 H -0.185 1.185 25 C -0.256 4.256 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.192 0.808 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.408 16.251 1.749 18.858 hybrid contribution -0.484 0.384 -0.896 1.088 sum -9.892 16.635 0.854 19.373 Atomic orbital electron populations 1.22072 0.76771 1.05213 1.02923 1.47162 1.08064 1.03163 1.77513 1.19860 0.98273 0.84357 0.89662 1.25095 0.98736 1.06332 1.02207 1.20471 1.01336 0.99348 0.93690 1.20547 0.96245 1.02576 0.97611 1.26008 1.02099 1.04733 1.03092 1.85500 1.24548 1.51731 1.07693 1.16221 0.85175 0.81392 0.77903 1.90954 1.13607 1.86401 1.57675 1.42523 1.10283 1.02903 1.76432 1.17307 0.93659 0.84792 0.96013 1.20427 1.05458 0.92517 1.08878 1.20821 0.94989 0.97012 0.98021 1.21289 0.99726 0.99070 1.01820 1.17816 0.91908 0.91387 0.90127 1.19727 1.08270 0.95397 1.29801 0.92355 1.26651 1.02777 0.94326 0.93737 1.69858 1.36359 1.04161 1.34405 0.85228 0.76935 0.79198 0.78728 1.19180 1.18097 1.18539 1.20915 0.99781 0.97928 1.06983 0.92153 0.90592 0.86903 0.91473 0.83896 0.80846 0.81464 0.80725 0.74615 0.85071 0.85781 0.87776 0.90019 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.29 127.77 1.31 2.33 16 2 N -0.62 -15.77 2.86 -869.32 -2.48 -18.26 16 3 C 0.20 4.60 5.94 85.63 0.51 5.11 16 4 C -0.20 -5.05 6.09 24.59 0.15 -4.90 16 5 C -0.12 -2.15 10.05 21.22 0.21 -1.94 16 6 C -0.14 -2.64 10.18 21.22 0.22 -2.43 16 7 C -0.22 -5.27 11.23 66.72 0.75 -4.52 16 8 S 0.04 1.30 23.33 -56.49 -1.32 -0.02 16 9 C 0.69 26.02 8.01 179.06 1.43 27.46 16 10 O -0.61 -29.41 13.68 -4.00 -0.05 -29.47 16 11 N -0.67 -24.52 5.22 -317.33 -1.66 -26.17 16 12 C 0.18 8.26 6.25 38.10 0.24 8.50 16 13 C -0.25 -10.83 9.97 22.58 0.23 -10.60 16 14 C -0.09 -4.19 10.02 22.20 0.22 -3.96 16 15 C -0.20 -11.00 8.69 22.75 0.20 -10.80 16 16 C 0.09 5.38 5.57 -21.31 -0.12 5.27 16 17 C -0.50 -30.22 9.05 23.46 0.21 -30.01 16 18 H 0.06 3.58 7.90 -2.91 -0.02 3.55 16 19 C 0.04 2.16 5.16 85.26 0.44 2.60 16 20 N -0.82 -44.86 10.94 21.82 0.24 -44.62 16 21 Si 0.98 41.36 29.59 68.60 2.03 43.39 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 C -0.23 -13.21 8.39 22.85 0.19 -13.02 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.96 6.29 -2.39 -0.02 0.95 16 28 H 0.11 0.76 7.89 -2.39 -0.02 0.74 16 29 H 0.07 1.92 7.42 -2.39 -0.02 1.90 16 30 H 0.14 1.78 7.89 -2.39 -0.02 1.76 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.17 2.09 8.06 -2.92 -0.02 2.06 16 33 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.41 11.18 6.51 -92.71 -0.60 10.57 16 35 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.10 5.94 6.16 -2.91 -0.02 5.92 16 38 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.08 4.85 6.48 -2.91 -0.02 4.83 16 Total: -1.00 -78.44 345.09 3.43 -75.01 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.48 Total: 31.07 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 6.19 Total: -30.93 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.90 Total: -89.05 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.05 Total: -29.47 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.32 Total: -0.02 kcal Total: -78.44 3.43 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624873813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.095 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds