Wall clock time and date at job start Tue Mar 31 2020 11:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38218 * 120.00866 * 2 1 4 4 C 1.38225 * 120.02429 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97640 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.47147 * 90.00405 * 5 4 3 7 7 S 1.65593 * 120.00160 * 164.42370 * 6 5 4 8 8 O 1.42105 * 106.40371 * 176.27723 * 7 6 5 9 9 O 1.42101 * 106.40243 * 309.19388 * 7 6 5 10 10 N 1.65602 * 107.21891 * 62.73392 * 7 6 5 11 11 C 1.46496 * 119.99999 * 273.06010 * 10 7 6 12 12 C 1.46502 * 119.99795 * 93.06438 * 10 7 6 13 13 C 1.50699 * 109.47164 * 95.55349 * 12 10 7 14 14 H 1.08001 * 119.99950 * 4.95619 * 13 12 10 15 15 C 1.37882 * 119.99948 * 184.95384 * 13 12 10 16 16 N 1.31519 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00018 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47102 * 89.99925 * 17 15 13 19 19 H 1.48496 * 109.47134 * 209.99965 * 17 15 13 20 20 H 1.48498 * 109.47129 * 330.00066 * 17 15 13 21 21 C 1.38270 * 120.05043 * 359.97438 * 4 3 2 22 22 C 1.38175 * 120.02493 * 359.97438 * 21 4 3 23 23 C 1.38437 * 120.01636 * 179.97438 * 2 1 3 24 24 F 1.35106 * 120.01921 * 359.74752 * 23 2 1 25 25 H 1.08997 * 109.47153 * 270.01657 * 1 2 3 26 26 H 1.09001 * 109.47142 * 30.02025 * 1 2 3 27 27 H 1.09001 * 109.46440 * 150.01704 * 1 2 3 28 28 H 1.08002 * 119.99062 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47553 * 210.00323 * 5 4 3 30 30 H 1.09009 * 109.47532 * 330.00522 * 5 4 3 31 31 H 0.96998 * 119.99699 * 344.42239 * 6 5 4 32 32 H 1.09005 * 109.47181 * 90.00476 * 11 10 7 33 33 H 1.09008 * 109.47389 * 210.00115 * 11 10 7 34 34 H 1.08994 * 109.47318 * 330.00199 * 11 10 7 35 35 H 1.09004 * 109.46949 * 215.55188 * 12 10 7 36 36 H 1.09001 * 109.47081 * 335.55362 * 12 10 7 37 37 H 0.96997 * 119.99965 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.98436 * 180.02562 * 21 4 3 39 39 H 1.07998 * 120.00934 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1973 0.0005 5 6 4.3332 2.5028 0.0011 6 7 4.5766 2.9256 1.3826 7 16 5.6984 4.1007 1.7034 8 8 5.6365 4.3433 3.1022 9 8 6.8900 3.7113 1.0342 10 7 5.1793 5.4888 0.9645 11 6 5.5304 5.7497 -0.4336 12 6 4.3690 6.4559 1.7091 13 6 5.2618 7.5313 2.2724 14 1 6.3137 7.5429 2.0277 15 6 4.7358 8.5006 3.1001 16 7 5.5150 9.4394 3.5913 17 14 2.9167 8.4802 3.5238 18 1 2.7030 7.6695 4.7495 19 1 2.4481 9.8692 3.7610 20 1 2.1528 7.8856 2.3977 21 6 4.2733 0.0006 0.0016 22 6 3.5844 -1.1971 0.0027 23 6 2.1996 -1.1987 0.0005 24 9 1.5248 -2.3692 0.0062 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5136 28 1 1.6583 2.1322 -0.0004 29 1 5.2858 2.3734 -0.5124 30 1 3.7437 3.2623 -0.5127 31 1 4.0807 2.5171 2.1092 32 1 4.7624 5.3326 -1.0851 33 1 5.5997 6.8254 -0.5962 34 1 6.4902 5.2855 -0.6599 35 1 3.6352 6.9062 1.0405 36 1 3.8540 5.9474 2.5242 37 1 5.1450 10.1210 4.1738 38 1 5.3533 0.0022 0.0024 39 1 4.1257 -2.1316 0.0039 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027967088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:52 Heat of formation + Delta-G solvation = -97.658380 kcal Electronic energy + Delta-G solvation = -24211.326770 eV Core-core repulsion = 20388.208384 eV Total energy + Delta-G solvation = -3823.118386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.19216 -39.69826 -36.73218 -35.71651 -35.40524 -35.25952 -33.07176 -32.40635 -30.87804 -28.42649 -27.41229 -25.71783 -25.17901 -22.85799 -21.95666 -21.14971 -19.07267 -17.84963 -17.42432 -17.09626 -16.86714 -16.76844 -16.18210 -15.95097 -15.32282 -14.84700 -14.30905 -14.21571 -14.04090 -13.72250 -13.66028 -13.59281 -13.22768 -13.04512 -12.79285 -12.54097 -12.37922 -12.32674 -11.92036 -11.77968 -11.55085 -11.35233 -11.31651 -11.27086 -11.25565 -10.69386 -10.48649 -10.30224 -9.59916 -9.48933 -9.25258 -8.87421 -8.61025 -8.16910 -6.10492 -4.10225 0.68006 0.89082 1.16845 3.12750 3.26108 3.30984 3.33477 3.52198 3.93593 4.04427 4.28335 4.36267 4.36780 4.45821 4.84283 4.88826 4.91812 5.12159 5.20756 5.24389 5.26088 5.28630 5.47239 5.51918 5.68120 5.72432 5.81748 5.84878 5.88553 5.96501 6.17212 6.20534 6.41384 6.56250 6.68958 6.93461 7.08335 7.38047 7.55560 8.46320 8.94022 9.48663 11.03009 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.003483 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.875619 B = 8036.780731 C = 8891.100815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.100 4.100 5 C 0.161 3.839 6 N -1.132 6.132 7 S 2.782 3.218 8 O -0.961 6.961 9 O -0.992 6.992 10 N -0.990 5.990 11 C 0.092 3.908 12 C 0.228 3.772 13 C -0.535 4.535 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.874 3.126 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.078 4.078 22 C -0.151 4.151 23 C 0.097 3.903 24 F -0.140 7.140 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.414 0.586 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.906 -19.538 -10.803 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.102 4.102 5 C 0.035 3.965 6 N -0.891 5.891 7 S 2.789 3.211 8 O -0.944 6.944 9 O -0.975 6.975 10 N -0.832 5.832 11 C -0.055 4.055 12 C 0.105 3.895 13 C -0.574 4.574 14 H 0.096 0.904 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.700 3.300 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.097 4.097 22 C -0.170 4.170 23 C 0.078 3.922 24 F -0.118 7.118 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.020 -19.407 -10.343 23.408 hybrid contribution -1.576 -0.219 0.447 1.653 sum -9.596 -19.626 -9.896 23.983 Atomic orbital electron populations 1.20739 0.90010 1.03385 1.02994 1.19951 0.97159 0.91841 1.03251 1.20932 0.93347 0.97402 0.97795 1.19940 0.93666 0.95026 1.01577 1.20113 1.00150 0.92867 0.83366 1.56384 1.61859 1.57605 1.13278 1.02003 0.73365 0.72394 0.73322 1.93653 1.86281 1.84334 1.30161 1.93535 1.44246 1.82856 1.76848 1.57376 1.69010 1.35379 1.21434 1.21431 0.99238 1.03948 0.80861 1.19433 0.91065 0.88097 0.90936 1.21383 0.97344 1.09348 1.29348 0.90388 1.24882 0.97842 0.95140 0.95085 1.69896 1.35506 1.14990 1.32837 0.86900 0.85727 0.77695 0.79666 1.19738 1.20959 1.19014 1.21022 1.00657 0.90773 0.97231 1.21142 0.92157 0.99886 1.03815 1.17600 0.90105 0.80910 1.03619 1.91481 1.80430 1.46019 1.93885 0.90673 0.90744 0.91236 0.84544 0.89463 0.90701 0.75325 0.94171 0.90051 0.91230 0.94964 0.95103 0.92480 0.84488 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.83 36.01 0.35 -0.47 16 2 C -0.12 -1.10 5.89 -104.55 -0.62 -1.72 16 3 C -0.08 -0.68 9.35 -39.59 -0.37 -1.05 16 4 C -0.10 -0.95 5.28 -104.62 -0.55 -1.51 16 5 C 0.16 1.68 6.38 -5.19 -0.03 1.65 16 6 N -1.13 -14.87 6.04 -11.65 -0.07 -14.94 16 7 S 2.78 51.63 6.09 -107.50 -0.65 50.98 16 8 O -0.96 -22.07 16.99 -57.17 -0.97 -23.04 16 9 O -0.99 -19.61 16.34 -57.17 -0.93 -20.54 16 10 N -0.99 -19.05 3.23 -123.05 -0.40 -19.45 16 11 C 0.09 1.43 10.69 59.84 0.64 2.07 16 12 C 0.23 5.21 4.16 -5.19 -0.02 5.19 16 13 C -0.54 -15.06 9.93 -34.44 -0.34 -15.40 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 16 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 17 Si 0.87 20.89 27.37 -169.99 -4.65 16.24 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -5.83 6.69 56.52 0.38 -5.46 16 21 C -0.08 -0.70 9.70 -39.59 -0.38 -1.09 16 22 C -0.15 -1.34 10.03 -39.52 -0.40 -1.73 16 23 C 0.10 0.95 7.24 -39.42 -0.29 0.66 16 24 F -0.14 -1.44 16.48 2.25 0.04 -1.40 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 28 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.09 0.88 7.74 -51.93 -0.40 0.48 16 30 H 0.07 0.68 8.00 -51.92 -0.42 0.27 16 31 H 0.41 4.87 8.65 -34.46 -0.30 4.57 16 32 H 0.04 0.47 8.06 -51.93 -0.42 0.06 16 33 H 0.08 1.33 8.07 -51.92 -0.42 0.91 16 34 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 35 H 0.03 0.69 7.51 -51.93 -0.39 0.30 16 36 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -35.02 347.51 -8.88 -43.90 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.14 Total: 0.97 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.10 Total: -11.38 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.31 Total: -60.95 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.91 Total: -43.58 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.65 Total: 16.24 kcal Atomic # 16 Polarization: 51.63 SS G_CDS: -0.65 Total: 50.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.02 -8.88 -43.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027967088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.762 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds