Wall clock time and date at job start Tue Mar 31 2020 11:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47133 * 2 1 4 4 N 1.46502 * 109.47001 * 119.99978 * 2 1 3 5 5 S 1.65598 * 119.99921 * 263.83128 * 4 2 1 6 6 O 1.42105 * 106.40208 * 48.45670 * 5 4 2 7 7 O 1.42108 * 106.40164 * 181.37323 * 5 4 2 8 8 N 1.65596 * 107.21875 * 294.91465 * 5 4 2 9 9 C 1.46496 * 120.00071 * 95.69393 * 8 5 4 10 10 C 1.46499 * 119.99923 * 275.69149 * 8 5 4 11 11 C 1.50706 * 109.47180 * 95.23981 * 10 8 5 12 12 H 1.08004 * 119.99941 * 4.93785 * 11 10 8 13 13 C 1.37872 * 120.00319 * 184.94323 * 11 10 8 14 14 N 1.31514 * 120.00217 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00125 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47107 * 59.99738 * 15 13 11 17 17 H 1.48497 * 109.47403 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47133 * 299.99588 * 15 13 11 19 19 C 1.50700 * 109.46850 * 239.99908 * 2 1 3 20 20 C 1.38240 * 119.97155 * 279.72502 * 19 2 1 21 21 C 1.38202 * 120.02340 * 179.73108 * 20 19 2 22 22 C 1.38455 * 119.97282 * 0.52544 * 21 20 19 23 23 F 1.35107 * 120.02816 * 179.73023 * 22 21 20 24 24 C 1.38466 * 119.95043 * 359.74988 * 22 21 20 25 25 C 1.38192 * 119.96994 * 359.97438 * 24 22 21 26 26 H 1.09003 * 109.46898 * 55.24697 * 1 2 3 27 27 H 1.08998 * 109.47449 * 175.24628 * 1 2 3 28 28 H 1.09004 * 109.47029 * 295.25280 * 1 2 3 29 29 H 0.96999 * 119.99763 * 83.82847 * 4 2 1 30 30 H 1.09002 * 109.47634 * 90.00186 * 9 8 5 31 31 H 1.09004 * 109.46861 * 210.00270 * 9 8 5 32 32 H 1.09004 * 109.47100 * 329.99993 * 9 8 5 33 33 H 1.08996 * 109.47406 * 215.23669 * 10 8 5 34 34 H 1.09000 * 109.47336 * 335.23707 * 10 8 5 35 35 H 0.96995 * 120.00380 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.99276 * 359.97438 * 20 19 2 37 37 H 1.08000 * 120.01368 * 180.25899 * 21 20 19 38 38 H 1.07997 * 120.01373 * 179.97438 * 24 22 21 39 39 H 1.07999 * 119.98849 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4396 0.1796 2.5407 6 8 1.3701 1.0827 2.7855 7 8 2.8967 -0.7625 3.5014 8 7 3.7504 1.1062 2.1340 9 6 3.5618 2.4954 1.7091 10 6 5.0986 0.5367 2.1992 11 6 5.4953 0.0276 0.8373 12 1 4.8458 0.1901 -0.0102 13 6 6.6871 -0.6458 0.6733 14 7 7.4782 -0.8433 1.7052 15 14 7.1784 -1.2774 -1.0146 16 1 7.2776 -0.1368 -1.9604 17 1 8.4939 -1.9604 -0.9240 18 1 6.1547 -2.2366 -1.5014 19 6 2.0323 -0.7104 -1.2305 20 6 2.0717 -2.0919 -1.2626 21 6 2.5269 -2.7446 -2.3925 22 6 2.9537 -2.0142 -3.4885 23 9 3.4041 -2.6511 -4.5917 24 6 2.9191 -0.6304 -3.4531 25 6 2.4582 0.0199 -2.3242 26 1 -0.3633 0.5858 -0.8444 27 1 -0.3634 -1.0241 -0.0852 28 1 -0.3633 0.4384 0.9295 29 1 2.0948 -1.6576 1.2006 30 1 3.5989 3.1501 2.5798 31 1 4.3528 2.7727 1.0122 32 1 2.5936 2.5972 1.2189 33 1 5.8025 1.3050 2.5190 34 1 5.1109 -0.2871 2.9128 35 1 8.3169 -1.3167 1.5897 36 1 1.7430 -2.6614 -0.4058 37 1 2.5537 -3.8240 -2.4189 38 1 3.2522 -0.0597 -4.3073 39 1 2.4314 1.0992 -2.2961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028083293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:05 Heat of formation + Delta-G solvation = -99.556276 kcal Electronic energy + Delta-G solvation = -25599.546466 eV Core-core repulsion = 21776.345781 eV Total energy + Delta-G solvation = -3823.200685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.81725 -39.40767 -36.72108 -35.78324 -35.46401 -35.24818 -32.49790 -31.19500 -30.50708 -28.69715 -27.80432 -25.10439 -23.69097 -23.03453 -22.29909 -20.91870 -18.97605 -17.79565 -17.31937 -16.77885 -16.53918 -16.41312 -15.89562 -15.51343 -15.22190 -14.80345 -14.38655 -13.96665 -13.73189 -13.52720 -13.45351 -13.30087 -12.98910 -12.83377 -12.41475 -12.26425 -12.19647 -11.76352 -11.72472 -11.52400 -11.48527 -11.17584 -11.13062 -11.00423 -10.89607 -10.72420 -10.52353 -10.14111 -9.80029 -9.32567 -9.03557 -8.51293 -8.49167 -8.07167 -6.11816 -4.18171 1.13423 1.28763 1.33378 3.25761 3.31403 3.33419 3.42743 3.68240 4.12278 4.32562 4.36300 4.60326 4.72904 4.91188 4.97922 5.09552 5.22312 5.25556 5.35554 5.41792 5.49161 5.61280 5.81598 5.89881 5.99094 6.01735 6.10231 6.16821 6.21777 6.25443 6.30404 6.51914 6.60757 6.93088 7.17418 7.35980 7.42989 7.62239 7.85234 8.13755 8.87065 9.48428 10.96094 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.007584 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.620849 B = 3690.990521 C = 5555.068024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.201 3.799 3 H 0.091 0.909 4 N -1.118 6.118 5 S 2.788 3.212 6 O -0.999 6.999 7 O -0.980 6.980 8 N -0.996 5.996 9 C 0.103 3.897 10 C 0.245 3.755 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.087 4.087 20 C -0.075 4.075 21 C -0.150 4.150 22 C 0.092 3.908 23 F -0.144 7.144 24 C -0.151 4.151 25 C -0.078 4.078 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.412 0.588 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 1.498 -7.785 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.094 3.906 3 H 0.109 0.891 4 N -0.876 5.876 5 S 2.796 3.204 6 O -0.982 6.982 7 O -0.964 6.964 8 N -0.839 5.839 9 C -0.044 4.044 10 C 0.123 3.877 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.089 4.089 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.073 3.927 23 F -0.123 7.123 24 C -0.170 4.170 25 C -0.096 4.096 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.413 1.582 -6.887 14.283 hybrid contribution 1.013 -0.990 -1.658 2.180 sum -11.400 0.593 -8.545 14.259 Atomic orbital electron populations 1.22333 0.94253 1.02704 1.03161 1.19455 0.93847 0.95278 0.82067 0.89106 1.56155 1.81979 1.19412 1.30051 1.01692 0.72709 0.72885 0.73162 1.93542 1.54748 1.65271 1.84655 1.93595 1.81687 1.63011 1.58115 1.57605 1.22628 1.20694 1.82966 1.21282 1.01066 0.82393 0.99618 1.19212 0.76120 0.94602 0.97747 1.21495 1.04827 1.36488 0.94711 0.91850 1.24917 0.96394 0.95726 0.96632 1.69920 1.11814 1.41346 1.29741 0.86712 0.77921 0.79310 0.84508 1.20209 1.21295 1.19908 1.19987 0.99498 0.93955 0.95416 1.20723 0.97756 0.93860 0.96995 1.21079 1.02074 1.00679 0.93010 1.17732 1.00109 0.90856 0.84028 1.91478 1.86977 1.82337 1.51503 1.21077 1.03117 0.92500 1.00299 1.20835 0.96715 1.00230 0.91861 0.91579 0.92063 0.90701 0.75352 0.93679 0.90790 0.92764 0.94696 0.92996 0.92563 0.85092 0.84875 0.84830 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.50 37.16 0.35 -1.48 16 2 C 0.20 2.68 3.01 -69.08 -0.21 2.47 16 3 H 0.09 1.18 6.63 -51.93 -0.34 0.83 16 4 N -1.12 -17.38 5.47 -5.88 -0.03 -17.41 16 5 S 2.79 52.80 6.01 -107.50 -0.65 52.16 16 6 O -1.00 -19.08 16.36 -57.17 -0.94 -20.02 16 7 O -0.98 -22.16 16.82 -57.17 -0.96 -23.12 16 8 N -1.00 -19.74 3.23 -123.05 -0.40 -20.13 16 9 C 0.10 1.67 10.18 59.84 0.61 2.28 16 10 C 0.25 5.95 5.42 -5.19 -0.03 5.92 16 11 C -0.54 -13.65 9.38 -34.44 -0.32 -13.98 16 12 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.09 -1.17 4.96 -104.62 -0.52 -1.69 16 20 C -0.07 -1.00 9.17 -39.59 -0.36 -1.36 16 21 C -0.15 -2.04 10.03 -39.51 -0.40 -2.44 16 22 C 0.09 1.33 7.30 -39.42 -0.29 1.05 16 23 F -0.14 -2.15 17.27 2.25 0.04 -2.11 16 24 C -0.15 -2.01 10.03 -39.51 -0.40 -2.41 16 25 C -0.08 -1.00 9.67 -39.60 -0.38 -1.38 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 29 H 0.41 5.92 7.09 -34.47 -0.24 5.68 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.05 0.75 6.59 -51.93 -0.34 0.40 16 33 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.05 1.40 6.99 -51.93 -0.36 1.04 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.13 1.49 6.79 -52.49 -0.36 1.13 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -32.25 346.08 -9.01 -41.26 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.97 Total: 4.18 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.04 Total: -11.34 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.31 Total: -62.16 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.90 Total: -43.14 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 52.80 SS G_CDS: -0.65 Total: 52.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.25 -9.01 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028083293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.293 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds