Wall clock time and date at job start Tue Mar 31 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99873 * 2 1 4 4 C 1.50698 * 109.47099 * 275.35670 * 3 2 1 5 5 H 1.08004 * 120.00214 * 4.39423 * 4 3 2 6 6 C 1.37877 * 120.00036 * 184.39476 * 4 3 2 7 7 N 1.31511 * 119.99772 * 4.76337 * 6 4 3 8 8 Si 1.86800 * 120.00029 * 184.75827 * 6 4 3 9 9 H 1.48501 * 109.46714 * 94.86461 * 8 6 4 10 10 H 1.48501 * 109.47180 * 214.85575 * 8 6 4 11 11 H 1.48494 * 109.47378 * 334.86238 * 8 6 4 12 12 S 1.65607 * 119.99825 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.39824 * 333.84933 * 12 2 1 14 14 O 1.42107 * 106.39702 * 200.93563 * 12 2 1 15 15 N 1.65598 * 107.21955 * 87.39498 * 12 2 1 16 16 C 1.46493 * 119.99928 * 87.18499 * 15 12 2 17 17 C 1.46502 * 119.99721 * 267.18351 * 15 12 2 18 18 C 1.50709 * 109.46631 * 262.82888 * 17 15 12 19 19 C 1.38266 * 119.98565 * 274.55725 * 18 17 15 20 20 C 1.38221 * 120.04830 * 180.25827 * 19 18 17 21 21 C 1.38218 * 120.02482 * 359.49179 * 20 19 18 22 22 C 1.38435 * 119.97468 * 0.25432 * 21 20 19 23 23 F 1.35109 * 120.02365 * 179.97438 * 22 21 20 24 24 C 1.38174 * 119.98583 * 94.30970 * 18 17 15 25 25 H 1.08998 * 109.46887 * 269.99753 * 1 2 3 26 26 H 1.08995 * 109.47325 * 29.99781 * 1 2 3 27 27 H 1.08996 * 109.46928 * 150.00052 * 1 2 3 28 28 H 1.08994 * 109.47462 * 35.35953 * 3 2 1 29 29 H 1.08999 * 109.46533 * 155.35874 * 3 2 1 30 30 H 0.97003 * 119.99957 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.46805 * 269.99781 * 16 15 12 32 32 H 1.08994 * 109.47642 * 29.99414 * 16 15 12 33 33 H 1.09003 * 109.47365 * 149.99949 * 16 15 12 34 34 H 1.08998 * 109.46956 * 142.83505 * 17 15 12 35 35 H 1.08998 * 109.47438 * 22.82635 * 17 15 12 36 36 H 1.07993 * 119.97717 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.98890 * 179.76127 * 20 19 18 38 38 H 1.08010 * 120.01224 * 180.23167 * 21 20 19 39 39 H 1.08005 * 120.01150 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3338 1.7701 -1.4146 5 1 1.8561 1.2385 -2.2243 6 6 3.0683 2.9074 -1.6752 7 7 3.7269 3.5016 -0.7042 8 14 3.1281 3.6042 -3.4073 9 1 2.0962 4.6624 -3.5510 10 1 4.4711 4.1850 -3.6611 11 1 2.8646 2.5196 -4.3866 12 16 2.2930 -1.4342 -0.0006 13 8 1.4339 -2.3937 0.5997 14 8 3.5963 -1.1453 0.4866 15 7 2.4759 -1.8940 -1.5810 16 6 3.6225 -1.4133 -2.3557 17 6 1.4909 -2.7815 -2.2042 18 6 1.9935 -4.2015 -2.1570 19 6 2.8346 -4.6702 -3.1493 20 6 3.2920 -5.9740 -3.1102 21 6 2.9175 -6.8075 -2.0732 22 6 2.0796 -6.3377 -1.0763 23 9 1.7124 -7.1518 -0.0625 24 6 1.6177 -5.0330 -1.1194 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6534 2.0024 0.5947 29 1 3.1881 1.1163 0.4285 30 1 4.2440 4.3016 -0.8876 31 1 3.3610 -0.4770 -2.8487 32 1 4.4685 -1.2486 -1.6885 33 1 3.8912 -2.1566 -3.1064 34 1 1.3392 -2.4841 -3.2418 35 1 0.5465 -2.7123 -1.6645 36 1 3.1314 -4.0184 -3.9575 37 1 3.9459 -6.3402 -3.8878 38 1 3.2781 -7.8251 -2.0408 39 1 0.9635 -4.6655 -0.3425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044648990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:09 Heat of formation + Delta-G solvation = -90.914347 kcal Electronic energy + Delta-G solvation = -25200.253046 eV Core-core repulsion = 21377.427103 eV Total energy + Delta-G solvation = -3822.825943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.89197 -39.32282 -36.70837 -35.91338 -35.48905 -35.20724 -32.51935 -31.59706 -30.52442 -27.86930 -27.25336 -25.14253 -24.54132 -22.71848 -22.28291 -21.63121 -18.45766 -17.57254 -17.16450 -16.73554 -16.44117 -16.27182 -16.24143 -15.76809 -15.56967 -14.84296 -14.49455 -14.26613 -13.84580 -13.51414 -13.36046 -13.29263 -12.71886 -12.44672 -12.35443 -12.29973 -12.24402 -12.08303 -11.74689 -11.69316 -11.27414 -11.16614 -11.15178 -11.13159 -11.02378 -10.77442 -10.54308 -10.11564 -9.81439 -9.10672 -8.78794 -8.75282 -8.52342 -8.05752 -6.14280 -4.20898 0.95473 1.13148 1.32264 3.21418 3.28564 3.30231 3.34668 3.62513 4.10972 4.18290 4.32744 4.59805 4.67056 4.91329 4.96341 5.02870 5.12179 5.19408 5.32545 5.52055 5.55486 5.63445 5.76822 5.95211 6.02000 6.05514 6.06741 6.15725 6.19433 6.28179 6.39780 6.47843 6.51667 6.81479 6.86342 7.29190 7.41011 7.62175 7.82503 8.12251 8.83809 9.44752 10.93687 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.004323 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.187280 B = 6475.362986 C = 7217.255508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.242 3.758 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.785 3.215 13 O -0.996 6.996 14 O -0.974 6.974 15 N -1.002 6.002 16 C 0.088 3.912 17 C 0.165 3.835 18 C -0.076 4.076 19 C -0.114 4.114 20 C -0.097 4.097 21 C -0.156 4.156 22 C 0.093 3.907 23 F -0.141 7.141 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.265 0.735 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -15.155 -6.122 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.120 3.880 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 S 2.793 3.207 13 O -0.980 6.980 14 O -0.958 6.958 15 N -0.839 5.839 16 C -0.057 4.057 17 C 0.039 3.961 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.175 4.175 22 C 0.074 3.926 23 F -0.120 7.120 24 C -0.155 4.155 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.524 -15.444 -5.272 16.695 hybrid contribution -0.084 0.588 -1.155 1.299 sum -3.608 -14.856 -6.427 16.583 Atomic orbital electron populations 1.21221 0.80220 1.01931 1.00639 1.57705 1.14132 1.23512 1.88514 1.19242 0.92344 0.78817 0.97566 1.21534 1.32461 1.10616 0.93316 0.91872 1.24967 0.94850 0.96846 0.97208 1.69946 1.30483 1.20028 1.32062 0.86564 0.77471 0.79368 0.84446 1.20687 1.21120 1.19775 1.01861 0.73259 0.72628 0.72930 1.93513 1.68549 1.61061 1.74899 1.93571 1.39090 1.84988 1.78120 1.57938 1.33799 1.59618 1.32586 1.21577 0.87722 0.99587 0.96784 1.20093 0.91057 0.84373 1.00574 1.20258 0.97182 0.96339 0.94068 1.21161 0.97339 0.95710 0.99078 1.20974 0.99331 0.93525 0.97683 1.21145 0.99922 1.01339 0.95062 1.17737 0.98870 0.89034 0.86985 1.91497 1.90219 1.72177 1.58104 1.21398 1.02131 0.91988 0.99989 0.93700 0.90826 0.93125 0.94835 0.92680 0.92550 0.91149 0.90137 0.92068 0.89251 0.89184 0.85202 0.85085 0.85001 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.77 10.31 59.85 0.62 2.38 16 2 N -1.00 -20.30 3.23 -123.06 -0.40 -20.70 16 3 C 0.24 5.94 5.41 -5.20 -0.03 5.92 16 4 C -0.54 -13.67 9.19 -34.44 -0.32 -13.98 16 5 H 0.06 1.53 7.69 -52.48 -0.40 1.13 16 6 C 0.06 1.70 5.45 -17.82 -0.10 1.61 16 7 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 S 2.78 55.14 6.02 -107.50 -0.65 54.49 16 13 O -1.00 -19.54 15.09 -57.17 -0.86 -20.40 16 14 O -0.97 -22.91 15.30 -57.17 -0.87 -23.78 16 15 N -1.00 -16.25 3.23 -123.05 -0.40 -16.65 16 16 C 0.09 1.39 10.68 59.84 0.64 2.03 16 17 C 0.17 2.13 5.50 -5.19 -0.03 2.10 16 18 C -0.08 -0.97 5.44 -104.63 -0.57 -1.54 16 19 C -0.11 -1.22 9.18 -39.58 -0.36 -1.59 16 20 C -0.10 -0.94 10.04 -39.59 -0.40 -1.34 16 21 C -0.16 -1.68 10.03 -39.52 -0.40 -2.08 16 22 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 23 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 24 C -0.14 -1.89 9.49 -39.52 -0.38 -2.26 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16 28 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.06 1.51 6.88 -51.93 -0.36 1.15 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.18 7.82 -51.92 -0.41 0.77 16 32 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 33 H 0.06 0.74 6.84 -51.93 -0.36 0.38 16 34 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.09 1.11 7.14 -51.93 -0.37 0.74 16 36 H 0.13 1.14 7.41 -52.49 -0.39 0.75 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.15 2.20 7.18 -52.48 -0.38 1.82 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.29 344.80 -8.92 -40.21 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.08 Total: 0.60 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.60 Total: -7.82 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.06 Total: -61.54 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.74 Total: -44.18 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.65 Total: 54.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.29 -8.92 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044648990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.709 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds