Wall clock time and date at job start Tue Mar 31 2020 11:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46499 * 119.99873 * 2 1
4 4 C 1.50698 * 109.47099 * 275.35670 * 3 2 1
5 5 H 1.08004 * 120.00214 * 4.39423 * 4 3 2
6 6 C 1.37877 * 120.00036 * 184.39476 * 4 3 2
7 7 N 1.31511 * 119.99772 * 4.76337 * 6 4 3
8 8 Si 1.86800 * 120.00029 * 184.75827 * 6 4 3
9 9 H 1.48501 * 109.46714 * 94.86461 * 8 6 4
10 10 H 1.48501 * 109.47180 * 214.85575 * 8 6 4
11 11 H 1.48494 * 109.47378 * 334.86238 * 8 6 4
12 12 S 1.65607 * 119.99825 * 180.02562 * 2 1 3
13 13 O 1.42099 * 106.39824 * 333.84933 * 12 2 1
14 14 O 1.42107 * 106.39702 * 200.93563 * 12 2 1
15 15 N 1.65598 * 107.21955 * 87.39498 * 12 2 1
16 16 C 1.46493 * 119.99928 * 87.18499 * 15 12 2
17 17 C 1.46502 * 119.99721 * 267.18351 * 15 12 2
18 18 C 1.50709 * 109.46631 * 262.82888 * 17 15 12
19 19 C 1.38266 * 119.98565 * 274.55725 * 18 17 15
20 20 C 1.38221 * 120.04830 * 180.25827 * 19 18 17
21 21 C 1.38218 * 120.02482 * 359.49179 * 20 19 18
22 22 C 1.38435 * 119.97468 * 0.25432 * 21 20 19
23 23 F 1.35109 * 120.02365 * 179.97438 * 22 21 20
24 24 C 1.38174 * 119.98583 * 94.30970 * 18 17 15
25 25 H 1.08998 * 109.46887 * 269.99753 * 1 2 3
26 26 H 1.08995 * 109.47325 * 29.99781 * 1 2 3
27 27 H 1.08996 * 109.46928 * 150.00052 * 1 2 3
28 28 H 1.08994 * 109.47462 * 35.35953 * 3 2 1
29 29 H 1.08999 * 109.46533 * 155.35874 * 3 2 1
30 30 H 0.97003 * 119.99957 * 179.97438 * 7 6 4
31 31 H 1.09009 * 109.46805 * 269.99781 * 16 15 12
32 32 H 1.08994 * 109.47642 * 29.99414 * 16 15 12
33 33 H 1.09003 * 109.47365 * 149.99949 * 16 15 12
34 34 H 1.08998 * 109.46956 * 142.83505 * 17 15 12
35 35 H 1.08998 * 109.47438 * 22.82635 * 17 15 12
36 36 H 1.07993 * 119.97717 * 0.02562 * 19 18 17
37 37 H 1.07999 * 119.98890 * 179.76127 * 20 19 18
38 38 H 1.08010 * 120.01224 * 180.23167 * 21 20 19
39 39 H 1.08005 * 120.01150 * 0.02562 * 24 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3338 1.7701 -1.4146
5 1 1.8561 1.2385 -2.2243
6 6 3.0683 2.9074 -1.6752
7 7 3.7269 3.5016 -0.7042
8 14 3.1281 3.6042 -3.4073
9 1 2.0962 4.6624 -3.5510
10 1 4.4711 4.1850 -3.6611
11 1 2.8646 2.5196 -4.3866
12 16 2.2930 -1.4342 -0.0006
13 8 1.4339 -2.3937 0.5997
14 8 3.5963 -1.1453 0.4866
15 7 2.4759 -1.8940 -1.5810
16 6 3.6225 -1.4133 -2.3557
17 6 1.4909 -2.7815 -2.2042
18 6 1.9935 -4.2015 -2.1570
19 6 2.8346 -4.6702 -3.1493
20 6 3.2920 -5.9740 -3.1102
21 6 2.9175 -6.8075 -2.0732
22 6 2.0796 -6.3377 -1.0763
23 9 1.7124 -7.1518 -0.0625
24 6 1.6177 -5.0330 -1.1194
25 1 -0.3633 0.0000 1.0277
26 1 -0.3634 0.8900 -0.5138
27 1 -0.3633 -0.8900 -0.5138
28 1 1.6534 2.0024 0.5947
29 1 3.1881 1.1163 0.4285
30 1 4.2440 4.3016 -0.8876
31 1 3.3610 -0.4770 -2.8487
32 1 4.4685 -1.2486 -1.6885
33 1 3.8912 -2.1566 -3.1064
34 1 1.3392 -2.4841 -3.2418
35 1 0.5465 -2.7123 -1.6645
36 1 3.1314 -4.0184 -3.9575
37 1 3.9459 -6.3402 -3.8878
38 1 3.2781 -7.8251 -2.0408
39 1 0.9635 -4.6655 -0.3425
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044648990.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:09
Heat of formation + Delta-G solvation = -90.914347 kcal
Electronic energy + Delta-G solvation = -25200.253046 eV
Core-core repulsion = 21377.427103 eV
Total energy + Delta-G solvation = -3822.825943 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.104 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.89197 -39.32282 -36.70837 -35.91338 -35.48905 -35.20724 -32.51935 -31.59706
-30.52442 -27.86930 -27.25336 -25.14253 -24.54132 -22.71848 -22.28291 -21.63121
-18.45766 -17.57254 -17.16450 -16.73554 -16.44117 -16.27182 -16.24143 -15.76809
-15.56967 -14.84296 -14.49455 -14.26613 -13.84580 -13.51414 -13.36046 -13.29263
-12.71886 -12.44672 -12.35443 -12.29973 -12.24402 -12.08303 -11.74689 -11.69316
-11.27414 -11.16614 -11.15178 -11.13159 -11.02378 -10.77442 -10.54308 -10.11564
-9.81439 -9.10672 -8.78794 -8.75282 -8.52342 -8.05752 -6.14280 -4.20898
0.95473 1.13148 1.32264 3.21418 3.28564 3.30231 3.34668 3.62513
4.10972 4.18290 4.32744 4.59805 4.67056 4.91329 4.96341 5.02870
5.12179 5.19408 5.32545 5.52055 5.55486 5.63445 5.76822 5.95211
6.02000 6.05514 6.06741 6.15725 6.19433 6.28179 6.39780 6.47843
6.51667 6.81479 6.86342 7.29190 7.41011 7.62175 7.82503 8.12251
8.83809 9.44752 10.93687
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.020430 B = 0.004323 C = 0.003879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1370.187280 B = 6475.362986 C = 7217.255508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.107 3.893
2 N -0.997 5.997
3 C 0.242 3.758
4 C -0.540 4.540
5 H 0.063 0.937
6 C 0.065 3.935
7 N -0.887 5.887
8 Si 0.894 3.106
9 H -0.281 1.281
10 H -0.285 1.285
11 H -0.273 1.273
12 S 2.785 3.215
13 O -0.996 6.996
14 O -0.974 6.974
15 N -1.002 6.002
16 C 0.088 3.912
17 C 0.165 3.835
18 C -0.076 4.076
19 C -0.114 4.114
20 C -0.097 4.097
21 C -0.156 4.156
22 C 0.093 3.907
23 F -0.141 7.141
24 C -0.136 4.136
25 H 0.044 0.956
26 H 0.073 0.927
27 H 0.050 0.950
28 H 0.034 0.966
29 H 0.055 0.945
30 H 0.265 0.735
31 H 0.070 0.930
32 H 0.080 0.920
33 H 0.061 0.939
34 H 0.089 0.911
35 H 0.090 0.910
36 H 0.130 0.870
37 H 0.131 0.869
38 H 0.132 0.868
39 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.955 -15.155 -6.122 16.816
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.839 5.839
3 C 0.120 3.880
4 C -0.579 4.579
5 H 0.081 0.919
6 C -0.139 4.139
7 N -0.525 5.525
8 Si 0.722 3.278
9 H -0.207 1.207
10 H -0.211 1.211
11 H -0.198 1.198
12 S 2.793 3.207
13 O -0.980 6.980
14 O -0.958 6.958
15 N -0.839 5.839
16 C -0.057 4.057
17 C 0.039 3.961
18 C -0.078 4.078
19 C -0.133 4.133
20 C -0.115 4.115
21 C -0.175 4.175
22 C 0.074 3.926
23 F -0.120 7.120
24 C -0.155 4.155
25 H 0.063 0.937
26 H 0.092 0.908
27 H 0.069 0.931
28 H 0.052 0.948
29 H 0.073 0.927
30 H 0.074 0.926
31 H 0.089 0.911
32 H 0.099 0.901
33 H 0.079 0.921
34 H 0.107 0.893
35 H 0.108 0.892
36 H 0.148 0.852
37 H 0.149 0.851
38 H 0.150 0.850
39 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -3.524 -15.444 -5.272 16.695
hybrid contribution -0.084 0.588 -1.155 1.299
sum -3.608 -14.856 -6.427 16.583
Atomic orbital electron populations
1.21221 0.80220 1.01931 1.00639 1.57705 1.14132 1.23512 1.88514
1.19242 0.92344 0.78817 0.97566 1.21534 1.32461 1.10616 0.93316
0.91872 1.24967 0.94850 0.96846 0.97208 1.69946 1.30483 1.20028
1.32062 0.86564 0.77471 0.79368 0.84446 1.20687 1.21120 1.19775
1.01861 0.73259 0.72628 0.72930 1.93513 1.68549 1.61061 1.74899
1.93571 1.39090 1.84988 1.78120 1.57938 1.33799 1.59618 1.32586
1.21577 0.87722 0.99587 0.96784 1.20093 0.91057 0.84373 1.00574
1.20258 0.97182 0.96339 0.94068 1.21161 0.97339 0.95710 0.99078
1.20974 0.99331 0.93525 0.97683 1.21145 0.99922 1.01339 0.95062
1.17737 0.98870 0.89034 0.86985 1.91497 1.90219 1.72177 1.58104
1.21398 1.02131 0.91988 0.99989 0.93700 0.90826 0.93125 0.94835
0.92680 0.92550 0.91149 0.90137 0.92068 0.89251 0.89184 0.85202
0.85085 0.85001 0.83323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.77 10.31 59.85 0.62 2.38 16
2 N -1.00 -20.30 3.23 -123.06 -0.40 -20.70 16
3 C 0.24 5.94 5.41 -5.20 -0.03 5.92 16
4 C -0.54 -13.67 9.19 -34.44 -0.32 -13.98 16
5 H 0.06 1.53 7.69 -52.48 -0.40 1.13 16
6 C 0.06 1.70 5.45 -17.82 -0.10 1.61 16
7 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16
8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16
9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16
11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
12 S 2.78 55.14 6.02 -107.50 -0.65 54.49 16
13 O -1.00 -19.54 15.09 -57.17 -0.86 -20.40 16
14 O -0.97 -22.91 15.30 -57.17 -0.87 -23.78 16
15 N -1.00 -16.25 3.23 -123.05 -0.40 -16.65 16
16 C 0.09 1.39 10.68 59.84 0.64 2.03 16
17 C 0.17 2.13 5.50 -5.19 -0.03 2.10 16
18 C -0.08 -0.97 5.44 -104.63 -0.57 -1.54 16
19 C -0.11 -1.22 9.18 -39.58 -0.36 -1.59 16
20 C -0.10 -0.94 10.04 -39.59 -0.40 -1.34 16
21 C -0.16 -1.68 10.03 -39.52 -0.40 -2.08 16
22 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16
23 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16
24 C -0.14 -1.89 9.49 -39.52 -0.38 -2.26 16
25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16
27 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16
28 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16
29 H 0.06 1.51 6.88 -51.93 -0.36 1.15 16
30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
31 H 0.07 1.18 7.82 -51.92 -0.41 0.77 16
32 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16
33 H 0.06 0.74 6.84 -51.93 -0.36 0.38 16
34 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16
35 H 0.09 1.11 7.14 -51.93 -0.37 0.74 16
36 H 0.13 1.14 7.41 -52.49 -0.39 0.75 16
37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16
39 H 0.15 2.20 7.18 -52.48 -0.38 1.82 16
LS Contribution 344.80 15.07 5.20 5.20
Total: -1.00 -31.29 344.80 -8.92 -40.21
By element:
Atomic # 1 Polarization: 5.68 SS G_CDS: -5.08 Total: 0.60 kcal
Atomic # 6 Polarization: -6.22 SS G_CDS: -1.60 Total: -7.82 kcal
Atomic # 7 Polarization: -61.48 SS G_CDS: -0.06 Total: -61.54 kcal
Atomic # 8 Polarization: -42.44 SS G_CDS: -1.74 Total: -44.18 kcal
Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal
Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal
Atomic # 16 Polarization: 55.14 SS G_CDS: -0.65 Total: 54.49 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -31.29 -8.92 -40.21 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044648990.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.709 kcal
(2) G-P(sol) polarization free energy of solvation -31.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds