Wall clock time and date at job start Tue Mar 31 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99873 * 2 1 4 4 C 1.50698 * 109.47099 * 275.35670 * 3 2 1 5 5 H 1.08004 * 120.00214 * 4.39423 * 4 3 2 6 6 C 1.37877 * 120.00036 * 184.39476 * 4 3 2 7 7 N 1.31511 * 119.99772 * 4.76337 * 6 4 3 8 8 Si 1.86800 * 120.00029 * 184.75827 * 6 4 3 9 9 H 1.48501 * 109.46714 * 94.86461 * 8 6 4 10 10 H 1.48501 * 109.47180 * 214.85575 * 8 6 4 11 11 H 1.48494 * 109.47378 * 334.86238 * 8 6 4 12 12 S 1.65607 * 119.99825 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.39824 * 333.84933 * 12 2 1 14 14 O 1.42107 * 106.39702 * 200.93563 * 12 2 1 15 15 N 1.65598 * 107.21955 * 87.39498 * 12 2 1 16 16 C 1.46493 * 119.99928 * 87.18499 * 15 12 2 17 17 C 1.46502 * 119.99721 * 267.18351 * 15 12 2 18 18 C 1.50709 * 109.46631 * 262.82888 * 17 15 12 19 19 C 1.38266 * 119.98565 * 274.55725 * 18 17 15 20 20 C 1.38221 * 120.04830 * 180.25827 * 19 18 17 21 21 C 1.38218 * 120.02482 * 359.49179 * 20 19 18 22 22 C 1.38435 * 119.97468 * 0.25432 * 21 20 19 23 23 F 1.35109 * 120.02365 * 179.97438 * 22 21 20 24 24 C 1.38174 * 119.98583 * 94.30970 * 18 17 15 25 25 H 1.08998 * 109.46887 * 269.99753 * 1 2 3 26 26 H 1.08995 * 109.47325 * 29.99781 * 1 2 3 27 27 H 1.08996 * 109.46928 * 150.00052 * 1 2 3 28 28 H 1.08994 * 109.47462 * 35.35953 * 3 2 1 29 29 H 1.08999 * 109.46533 * 155.35874 * 3 2 1 30 30 H 0.97003 * 119.99957 * 179.97438 * 7 6 4 31 31 H 1.09009 * 109.46805 * 269.99781 * 16 15 12 32 32 H 1.08994 * 109.47642 * 29.99414 * 16 15 12 33 33 H 1.09003 * 109.47365 * 149.99949 * 16 15 12 34 34 H 1.08998 * 109.46956 * 142.83505 * 17 15 12 35 35 H 1.08998 * 109.47438 * 22.82635 * 17 15 12 36 36 H 1.07993 * 119.97717 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.98890 * 179.76127 * 20 19 18 38 38 H 1.08010 * 120.01224 * 180.23167 * 21 20 19 39 39 H 1.08005 * 120.01150 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3338 1.7701 -1.4146 5 1 1.8561 1.2385 -2.2243 6 6 3.0683 2.9074 -1.6752 7 7 3.7269 3.5016 -0.7042 8 14 3.1281 3.6042 -3.4073 9 1 2.0962 4.6624 -3.5510 10 1 4.4711 4.1850 -3.6611 11 1 2.8646 2.5196 -4.3866 12 16 2.2930 -1.4342 -0.0006 13 8 1.4339 -2.3937 0.5997 14 8 3.5963 -1.1453 0.4866 15 7 2.4759 -1.8940 -1.5810 16 6 3.6225 -1.4133 -2.3557 17 6 1.4909 -2.7815 -2.2042 18 6 1.9935 -4.2015 -2.1570 19 6 2.8346 -4.6702 -3.1493 20 6 3.2920 -5.9740 -3.1102 21 6 2.9175 -6.8075 -2.0732 22 6 2.0796 -6.3377 -1.0763 23 9 1.7124 -7.1518 -0.0625 24 6 1.6177 -5.0330 -1.1194 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6534 2.0024 0.5947 29 1 3.1881 1.1163 0.4285 30 1 4.2440 4.3016 -0.8876 31 1 3.3610 -0.4770 -2.8487 32 1 4.4685 -1.2486 -1.6885 33 1 3.8912 -2.1566 -3.1064 34 1 1.3392 -2.4841 -3.2418 35 1 0.5465 -2.7123 -1.6645 36 1 3.1314 -4.0184 -3.9575 37 1 3.9459 -6.3402 -3.8878 38 1 3.2781 -7.8251 -2.0408 39 1 0.9635 -4.6655 -0.3425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044648990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:08 Heat of formation + Delta-G solvation = -111.196466 kcal Electronic energy + Delta-G solvation = -25201.132545 eV Core-core repulsion = 21377.427103 eV Total energy + Delta-G solvation = -3823.705441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.89987 -40.22839 -38.35133 -37.22305 -37.05155 -36.86386 -34.45771 -32.56716 -31.41482 -29.66347 -28.36301 -26.77779 -25.73185 -24.14167 -23.59771 -22.59643 -19.92531 -18.92861 -18.67959 -18.20183 -18.06485 -17.43213 -17.14904 -17.07795 -16.63099 -16.49057 -15.83287 -15.48563 -15.11019 -14.93889 -14.69308 -14.41986 -14.02152 -13.96686 -13.82991 -13.72033 -13.41064 -13.34534 -13.18076 -12.97600 -12.88621 -12.87651 -12.54528 -12.40899 -12.35618 -12.28088 -12.03878 -11.86485 -11.67698 -10.56135 -10.09680 -9.96330 -9.74510 -9.64367 -8.13724 -6.27867 -0.37096 0.19380 0.26078 1.47374 1.48190 1.58912 1.98862 2.44948 2.50856 2.73460 3.18126 3.25580 3.40389 3.71132 3.76385 3.97181 4.12828 4.17154 4.26540 4.38208 4.51162 4.64247 4.71445 4.80150 4.82693 4.92848 4.98446 5.06085 5.12293 5.15027 5.20272 5.27225 5.37063 5.46075 5.54964 5.62147 5.77979 5.95582 5.98548 6.12534 6.84395 7.42389 8.94838 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.004323 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.187280 B = 6475.362986 C = 7217.255508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.004 6.004 3 C 0.255 3.745 4 C -0.538 4.538 5 H 0.077 0.923 6 C 0.009 3.991 7 N -0.931 5.931 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.252 1.252 12 S 2.792 3.208 13 O -0.999 6.999 14 O -1.018 7.018 15 N -0.996 5.996 16 C 0.088 3.912 17 C 0.159 3.841 18 C -0.089 4.089 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.152 4.152 22 C 0.066 3.934 23 F -0.154 7.154 24 C -0.158 4.158 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -16.471 -9.586 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.845 5.845 3 C 0.132 3.868 4 C -0.577 4.577 5 H 0.095 0.905 6 C -0.190 4.190 7 N -0.571 5.571 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.176 1.176 12 S 2.801 3.199 13 O -0.982 6.982 14 O -1.002 7.002 15 N -0.836 5.836 16 C -0.057 4.057 17 C 0.034 3.966 18 C -0.091 4.091 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.171 4.171 22 C 0.047 3.953 23 F -0.132 7.132 24 C -0.178 4.178 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.841 -16.787 -8.729 19.306 hybrid contribution -0.022 0.879 -0.068 0.882 sum -3.863 -15.908 -8.797 18.584 Atomic orbital electron populations 1.21475 0.77985 1.03508 1.01801 1.57614 1.15653 1.22083 1.89140 1.18800 0.90762 0.80132 0.97135 1.21806 1.31764 1.10414 0.93681 0.90473 1.25870 0.94493 0.97315 1.01305 1.70097 1.31754 1.20686 1.34565 0.85476 0.77077 0.78967 0.79757 1.20406 1.21536 1.17567 1.01416 0.72242 0.72339 0.73862 1.93508 1.68324 1.60698 1.75707 1.93511 1.41434 1.85574 1.79716 1.57648 1.34734 1.59830 1.31354 1.21633 0.86573 1.00655 0.96824 1.20415 0.90102 0.83979 1.02107 1.20278 0.98307 0.95944 0.94604 1.21526 0.95952 0.96579 0.98811 1.21430 0.98665 0.92851 0.97707 1.21493 0.98624 1.02669 0.94295 1.18045 1.00368 0.89016 0.87834 1.91459 1.90548 1.72410 1.58831 1.21382 1.03026 0.92933 1.00457 0.92880 0.90514 0.90226 0.96595 0.96456 0.92641 0.92123 0.92697 0.87677 0.85851 0.89058 0.82422 0.81376 0.82767 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.15 10.31 127.77 1.32 4.47 16 2 N -1.00 -41.21 3.23 -543.24 -1.75 -42.97 16 3 C 0.26 12.92 5.41 85.63 0.46 13.38 16 4 C -0.54 -27.17 9.19 25.60 0.24 -26.93 16 5 H 0.08 3.61 7.69 -2.91 -0.02 3.59 16 6 C 0.01 0.50 5.45 84.66 0.46 0.96 16 7 N -0.93 -53.58 13.29 21.45 0.29 -53.29 16 8 Si 0.96 40.36 29.54 68.60 2.03 42.39 16 9 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 12 S 2.79 111.66 6.02 -56.49 -0.34 111.32 16 13 O -1.00 -39.43 15.09 -128.00 -1.93 -41.36 16 14 O -1.02 -49.83 15.30 -128.00 -1.96 -51.79 16 15 N -1.00 -30.81 3.23 -543.22 -1.75 -32.56 16 16 C 0.09 2.59 10.68 127.77 1.36 3.96 16 17 C 0.16 3.68 5.50 85.64 0.47 4.15 16 18 C -0.09 -2.07 5.44 -19.87 -0.11 -2.17 16 19 C -0.11 -1.90 9.18 22.27 0.20 -1.70 16 20 C -0.09 -1.35 10.04 22.26 0.22 -1.12 16 21 C -0.15 -2.88 10.03 22.31 0.22 -2.65 16 22 C 0.07 1.71 7.30 22.37 0.16 1.87 16 23 F -0.15 -4.33 17.27 44.97 0.78 -3.55 16 24 C -0.16 -4.34 9.49 22.31 0.21 -4.13 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 27 H 0.08 2.08 7.63 -2.39 -0.02 2.07 16 28 H 0.02 0.85 8.11 -2.39 -0.02 0.83 16 29 H 0.02 1.01 6.88 -2.39 -0.02 0.99 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.06 1.91 7.82 -2.38 -0.02 1.89 16 32 H 0.05 1.90 7.04 -2.39 -0.02 1.89 16 33 H 0.10 2.12 6.84 -2.39 -0.02 2.10 16 34 H 0.12 2.04 8.10 -2.39 -0.02 2.03 16 35 H 0.09 2.08 7.14 -2.39 -0.02 2.07 16 36 H 0.16 1.83 7.41 -2.91 -0.02 1.81 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.13 3.92 7.18 -2.91 -0.02 3.90 16 Total: -1.00 -70.45 344.80 1.64 -68.81 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.06 Total: 12.93 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.23 Total: -9.92 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -3.22 Total: -128.82 kcal Atomic # 8 Polarization: -89.27 SS G_CDS: -3.89 Total: -93.16 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 111.66 SS G_CDS: -0.34 Total: 111.32 kcal Total: -70.45 1.64 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044648990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.390 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds