Wall clock time and date at job start Tue Mar 31 2020 11:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47146 * 2 1 4 4 S 1.80999 * 109.47058 * 120.00142 * 2 1 3 5 5 C 1.76199 * 99.99693 * 190.65502 * 4 2 1 6 6 S 1.71201 * 120.00517 * 5.49004 * 5 4 2 7 7 N 1.34778 * 119.99678 * 185.49084 * 5 4 2 8 8 C 1.47027 * 125.64957 * 180.02562 * 7 5 4 9 9 C 1.54319 * 107.40334 * 178.98109 * 8 7 5 10 10 C 1.55153 * 102.94371 * 337.72476 * 9 8 7 11 11 C 1.47738 * 125.82301 * 359.89293 * 7 5 4 12 12 C 1.50696 * 109.46983 * 240.00101 * 2 1 3 13 13 O 1.21283 * 120.00370 * 264.99727 * 12 2 1 14 14 N 1.34778 * 119.99990 * 85.00524 * 12 2 1 15 15 C 1.46498 * 120.00268 * 359.97438 * 14 12 2 16 16 C 1.46506 * 119.99832 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47356 * 89.99729 * 16 14 12 18 18 H 1.07999 * 119.99603 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99745 * 180.02562 * 17 16 14 20 20 N 1.31506 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46718 * 59.99792 * 21 19 17 23 23 H 1.48490 * 109.46846 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46794 * 299.99909 * 21 19 17 25 25 H 1.08999 * 109.47189 * 305.53259 * 1 2 3 26 26 H 1.09000 * 109.47068 * 65.52909 * 1 2 3 27 27 H 1.09000 * 109.47273 * 185.53167 * 1 2 3 28 28 H 1.09001 * 109.88148 * 59.47851 * 8 7 5 29 29 H 1.09007 * 109.87863 * 298.47595 * 8 7 5 30 30 H 1.08999 * 110.72525 * 96.09423 * 9 8 7 31 31 H 1.09004 * 110.72033 * 219.36254 * 9 8 7 32 32 H 1.09003 * 111.00598 * 153.57349 * 10 9 8 33 33 H 1.09001 * 111.00814 * 277.43533 * 10 9 8 34 34 H 1.09001 * 110.28738 * 85.26166 * 11 7 5 35 35 H 1.09005 * 110.47528 * 323.03450 * 11 7 5 36 36 H 1.08999 * 109.46884 * 90.00443 * 15 14 12 37 37 H 1.08997 * 109.47496 * 210.00684 * 15 14 12 38 38 H 1.09006 * 109.47228 * 330.00982 * 15 14 12 39 39 H 1.08998 * 109.46491 * 209.99312 * 16 14 12 40 40 H 1.08998 * 109.46974 * 329.98877 * 16 14 12 41 41 H 0.97001 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8533 1.4778 5 6 3.8431 -0.4354 1.3957 6 16 4.4020 0.6521 0.1975 7 7 4.7109 -0.9720 2.2763 8 6 6.1571 -0.7110 2.3217 9 6 6.7349 -1.5178 3.5035 10 6 5.4955 -1.7435 4.4091 11 6 4.3704 -1.9178 3.3590 12 6 2.0323 -0.7104 -1.2304 13 8 2.3208 -1.8871 -1.1761 14 7 2.1611 -0.0380 -2.3914 15 6 1.8123 1.3834 -2.4573 16 6 2.6489 -0.7288 -3.5878 17 6 1.4815 -1.3082 -4.3444 18 1 0.4767 -1.1755 -3.9712 19 6 1.6963 -2.0085 -5.5125 20 7 2.9198 -2.1705 -5.9666 21 14 0.2492 -2.7274 -6.4500 22 1 -0.6726 -1.6345 -6.8512 23 1 0.7437 -3.4274 -7.6626 24 1 -0.4736 -3.6910 -5.5817 25 1 -0.3633 0.5972 0.8363 26 1 -0.3633 0.4257 -0.9354 27 1 -0.3634 -1.0229 0.0991 28 1 6.3371 0.3530 2.4758 29 1 6.6214 -1.0341 1.3899 30 1 7.1398 -2.4695 3.1595 31 1 7.4963 -0.9409 4.0286 32 1 5.6108 -2.6446 5.0116 33 1 5.3092 -0.8745 5.0402 34 1 4.3613 -2.9395 2.9792 35 1 3.4030 -1.6670 3.7942 36 1 2.6909 1.9843 -2.2228 37 1 1.4637 1.6258 -3.4612 38 1 1.0227 1.5975 -1.7369 39 1 3.1795 -0.0212 -4.2248 40 1 3.3255 -1.5310 -3.2935 41 1 3.0709 -2.6628 -6.7886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078553108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:50 Heat of formation + Delta-G solvation = -6.059120 kcal Electronic energy + Delta-G solvation = -22488.935407 eV Core-core repulsion = 19236.002239 eV Total energy + Delta-G solvation = -3252.933168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62001 -38.92487 -34.65047 -33.50369 -33.18708 -32.14519 -29.69694 -27.67305 -26.77667 -25.73055 -24.32820 -22.51754 -22.00659 -21.48383 -18.68970 -17.65556 -17.56980 -16.71943 -16.41137 -16.38437 -15.70332 -14.71354 -14.50178 -14.32307 -14.05141 -13.94652 -13.74711 -13.39919 -12.99557 -12.64598 -12.36907 -11.99476 -11.97259 -11.87243 -11.83380 -11.75415 -11.64545 -11.34831 -11.20763 -11.13899 -11.06605 -10.82476 -10.48738 -10.22733 -10.07131 -9.53621 -8.83421 -8.37752 -8.34557 -7.71889 -7.47449 -7.37589 -5.94977 -4.00026 0.65647 0.99302 1.72740 2.18726 2.70273 3.36521 3.40565 3.42906 3.59477 3.98589 4.06789 4.08410 4.38511 4.50709 4.77360 4.82083 4.97925 5.02575 5.07119 5.24734 5.32263 5.32496 5.38706 5.41206 5.48754 5.64471 5.66000 5.71981 5.81270 5.88474 6.11039 6.20808 6.41563 6.51479 7.19697 7.59686 7.68857 8.01667 8.33801 8.56681 8.99093 9.20399 9.64399 11.12742 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.003780 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.973788 B = 7406.005177 C = 7727.649933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 H 0.137 0.863 4 S 0.000 6.000 5 C 0.314 3.686 6 S -0.555 6.555 7 N -0.522 5.522 8 C 0.098 3.902 9 C -0.133 4.133 10 C -0.130 4.130 11 C 0.075 3.925 12 C 0.530 3.470 13 O -0.536 6.536 14 N -0.581 5.581 15 C 0.083 3.917 16 C 0.252 3.748 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.042 0.958 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 4.490 23.183 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.239 4.239 3 H 0.155 0.845 4 S 0.233 5.767 5 C -0.051 4.051 6 S -0.424 6.424 7 N -0.225 5.225 8 C -0.026 4.026 9 C -0.171 4.171 10 C -0.168 4.168 11 C -0.050 4.050 12 C 0.312 3.688 13 O -0.414 6.414 14 N -0.312 5.312 15 C -0.061 4.061 16 C 0.132 3.868 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.000 3.771 23.147 23.537 hybrid contribution -0.305 -0.185 -0.960 1.024 sum 1.695 3.586 22.187 22.539 Atomic orbital electron populations 1.21604 0.89570 1.03927 1.03946 1.24309 1.00852 1.05030 0.93728 0.84531 1.85217 0.96530 1.64056 1.30851 1.27485 0.96655 0.90693 0.90241 1.93294 1.83516 1.34894 1.30654 1.47647 1.08315 1.39498 1.27089 1.22436 0.77849 1.01829 1.00517 1.22716 0.97759 1.01293 0.95313 1.22790 0.93634 1.03619 0.96761 1.22978 1.00243 0.94255 0.87503 1.19351 0.78861 0.86851 0.83691 1.90680 1.51022 1.15431 1.84285 1.47778 1.63403 1.09512 1.10483 1.21685 0.99402 0.82751 1.02301 1.19230 0.95001 0.92646 0.79906 1.21424 0.93400 1.34419 1.07136 0.92551 1.24932 0.95812 0.96034 0.97327 1.69935 1.19624 1.41544 1.22252 0.86584 0.82561 0.79314 0.79096 1.20269 1.21234 1.20242 0.90847 0.89363 0.91006 0.89285 0.89125 0.89860 0.89099 0.88873 0.90040 0.89075 0.89211 0.93107 0.90963 0.92729 0.95045 0.94025 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.89 37.16 0.33 -1.40 16 2 C -0.11 -1.75 1.57 -27.89 -0.04 -1.80 16 3 H 0.14 2.19 5.71 -51.91 -0.30 1.89 16 4 S 0.00 0.00 19.66 -107.48 -2.11 -2.11 16 5 C 0.31 5.05 7.36 54.06 0.40 5.45 16 6 S -0.55 -10.80 26.25 -107.48 -2.82 -13.62 16 7 N -0.52 -6.48 3.34 -170.56 -0.57 -7.05 16 8 C 0.10 1.00 6.32 -3.06 -0.02 0.99 16 9 C -0.13 -0.81 6.95 -24.90 -0.17 -0.98 16 10 C -0.13 -0.69 7.08 -24.59 -0.17 -0.87 16 11 C 0.08 0.64 6.66 -2.37 -0.02 0.62 16 12 C 0.53 11.79 5.18 -10.99 -0.06 11.74 16 13 O -0.54 -14.19 15.71 5.56 0.09 -14.10 16 14 N -0.58 -13.37 2.86 -182.95 -0.52 -13.89 16 15 C 0.08 1.49 9.87 59.85 0.59 2.08 16 16 C 0.25 7.04 5.16 -5.19 -0.03 7.01 16 17 C -0.52 -15.39 9.39 -34.44 -0.32 -15.71 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 21 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.16 6.97 -51.93 -0.36 0.79 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.70 7.55 -51.93 -0.39 0.30 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.05 0.79 5.23 -51.93 -0.27 0.52 16 39 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -37.58 358.41 -10.75 -48.33 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.32 Total: -2.30 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 0.39 Total: 8.82 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.36 Total: -47.75 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -4.93 Total: -15.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.58 -10.75 -48.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078553108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.271 kcal (2) G-P(sol) polarization free energy of solvation -37.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds