Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47146 * 2 1 4 4 S 1.80999 * 109.47058 * 120.00142 * 2 1 3 5 5 C 1.76199 * 99.99693 * 190.65502 * 4 2 1 6 6 S 1.71201 * 120.00517 * 5.49004 * 5 4 2 7 7 N 1.34778 * 119.99678 * 185.49084 * 5 4 2 8 8 C 1.47027 * 125.64957 * 180.02562 * 7 5 4 9 9 C 1.54319 * 107.40334 * 178.98109 * 8 7 5 10 10 C 1.55153 * 102.94371 * 337.72476 * 9 8 7 11 11 C 1.47738 * 125.82301 * 359.89293 * 7 5 4 12 12 C 1.50696 * 109.46983 * 240.00101 * 2 1 3 13 13 O 1.21283 * 120.00370 * 264.99727 * 12 2 1 14 14 N 1.34778 * 119.99990 * 85.00524 * 12 2 1 15 15 C 1.46498 * 120.00268 * 359.97438 * 14 12 2 16 16 C 1.46506 * 119.99832 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47356 * 89.99729 * 16 14 12 18 18 H 1.07999 * 119.99603 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99745 * 180.02562 * 17 16 14 20 20 N 1.31506 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46718 * 59.99792 * 21 19 17 23 23 H 1.48490 * 109.46846 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46794 * 299.99909 * 21 19 17 25 25 H 1.08999 * 109.47189 * 305.53259 * 1 2 3 26 26 H 1.09000 * 109.47068 * 65.52909 * 1 2 3 27 27 H 1.09000 * 109.47273 * 185.53167 * 1 2 3 28 28 H 1.09001 * 109.88148 * 59.47851 * 8 7 5 29 29 H 1.09007 * 109.87863 * 298.47595 * 8 7 5 30 30 H 1.08999 * 110.72525 * 96.09423 * 9 8 7 31 31 H 1.09004 * 110.72033 * 219.36254 * 9 8 7 32 32 H 1.09003 * 111.00598 * 153.57349 * 10 9 8 33 33 H 1.09001 * 111.00814 * 277.43533 * 10 9 8 34 34 H 1.09001 * 110.28738 * 85.26166 * 11 7 5 35 35 H 1.09005 * 110.47528 * 323.03450 * 11 7 5 36 36 H 1.08999 * 109.46884 * 90.00443 * 15 14 12 37 37 H 1.08997 * 109.47496 * 210.00684 * 15 14 12 38 38 H 1.09006 * 109.47228 * 330.00982 * 15 14 12 39 39 H 1.08998 * 109.46491 * 209.99312 * 16 14 12 40 40 H 1.08998 * 109.46974 * 329.98877 * 16 14 12 41 41 H 0.97001 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8533 1.4778 5 6 3.8431 -0.4354 1.3957 6 16 4.4020 0.6521 0.1975 7 7 4.7109 -0.9720 2.2763 8 6 6.1571 -0.7110 2.3217 9 6 6.7349 -1.5178 3.5035 10 6 5.4955 -1.7435 4.4091 11 6 4.3704 -1.9178 3.3590 12 6 2.0323 -0.7104 -1.2304 13 8 2.3208 -1.8871 -1.1761 14 7 2.1611 -0.0380 -2.3914 15 6 1.8123 1.3834 -2.4573 16 6 2.6489 -0.7288 -3.5878 17 6 1.4815 -1.3082 -4.3444 18 1 0.4767 -1.1755 -3.9712 19 6 1.6963 -2.0085 -5.5125 20 7 2.9198 -2.1705 -5.9666 21 14 0.2492 -2.7274 -6.4500 22 1 -0.6726 -1.6345 -6.8512 23 1 0.7437 -3.4274 -7.6626 24 1 -0.4736 -3.6910 -5.5817 25 1 -0.3633 0.5972 0.8363 26 1 -0.3633 0.4257 -0.9354 27 1 -0.3634 -1.0229 0.0991 28 1 6.3371 0.3530 2.4758 29 1 6.6214 -1.0341 1.3899 30 1 7.1398 -2.4695 3.1595 31 1 7.4963 -0.9409 4.0286 32 1 5.6108 -2.6446 5.0116 33 1 5.3092 -0.8745 5.0402 34 1 4.3613 -2.9395 2.9792 35 1 3.4030 -1.6670 3.7942 36 1 2.6909 1.9843 -2.2228 37 1 1.4637 1.6258 -3.4612 38 1 1.0227 1.5975 -1.7369 39 1 3.1795 -0.0212 -4.2248 40 1 3.3255 -1.5310 -3.2935 41 1 3.0709 -2.6628 -6.7886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078553108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = -31.353465 kcal Electronic energy + Delta-G solvation = -22490.032252 eV Core-core repulsion = 19236.002239 eV Total energy + Delta-G solvation = -3254.030013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70731 -40.49998 -36.57538 -34.99159 -34.35743 -33.93210 -30.44343 -29.73187 -27.83986 -27.34630 -25.89522 -24.31833 -22.66638 -22.49360 -20.34452 -18.78983 -18.67163 -18.65564 -18.19610 -17.49460 -17.25189 -16.54889 -16.14441 -15.70649 -15.30222 -14.74062 -14.70703 -14.52174 -14.32895 -14.16263 -13.87304 -13.58801 -13.45811 -13.31969 -13.11663 -12.93666 -12.82673 -12.64451 -12.51372 -12.44853 -12.35104 -12.24573 -12.16658 -11.75403 -11.71474 -11.53297 -10.64045 -10.62828 -9.50695 -9.38330 -9.07031 -8.90353 -8.20324 -6.37082 -0.60735 -0.22965 0.39005 0.95303 1.36832 1.42219 1.49566 1.61755 1.90754 2.31393 2.46337 3.08009 3.34980 3.44318 3.50682 3.78107 3.85299 4.02277 4.06584 4.22560 4.33618 4.37549 4.62073 4.63706 4.66839 4.72444 4.72883 4.76310 4.90318 4.97968 4.98448 5.05800 5.11104 5.17643 5.22593 5.42751 5.57304 5.84524 6.05890 6.69169 6.79083 7.27669 7.46141 8.86820 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.003780 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.973788 B = 7406.005177 C = 7727.649933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.145 0.855 4 S 0.054 5.946 5 C 0.313 3.687 6 S -0.663 6.663 7 N -0.507 5.507 8 C 0.087 3.913 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.059 3.941 12 C 0.526 3.474 13 O -0.590 6.590 14 N -0.590 5.590 15 C 0.082 3.918 16 C 0.270 3.730 17 C -0.541 4.541 18 H 0.060 0.940 19 C 0.004 3.996 20 N -0.932 5.932 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.012 0.988 40 H -0.012 1.012 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 4.159 26.044 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.239 4.239 3 H 0.163 0.837 4 S 0.288 5.712 5 C -0.058 4.058 6 S -0.533 6.533 7 N -0.206 5.206 8 C -0.037 4.037 9 C -0.159 4.159 10 C -0.153 4.153 11 C -0.064 4.064 12 C 0.311 3.689 13 O -0.472 6.472 14 N -0.319 5.319 15 C -0.060 4.060 16 C 0.149 3.851 17 C -0.579 4.579 18 H 0.078 0.922 19 C -0.194 4.194 20 N -0.572 5.572 21 Si 0.797 3.203 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.136 0.864 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.030 0.970 40 H 0.006 0.994 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.015 3.466 26.075 26.304 hybrid contribution 0.421 -0.187 -1.672 1.735 sum 0.436 3.278 24.402 24.626 Atomic orbital electron populations 1.21728 0.86479 1.04543 1.06082 1.24257 1.03205 1.04626 0.91784 0.83721 1.84909 0.94487 1.63326 1.28518 1.27475 0.97922 0.90393 0.89997 1.93462 1.84857 1.39727 1.35225 1.48143 1.08978 1.37519 1.25916 1.22704 0.76749 1.02706 1.01569 1.22751 0.98518 1.01112 0.93520 1.22845 0.91044 1.05661 0.95717 1.23467 1.02549 0.93280 0.87114 1.20236 0.77480 0.86429 0.84772 1.90635 1.53215 1.17941 1.85367 1.47752 1.63322 1.11296 1.09575 1.21881 1.00774 0.79795 1.03585 1.18625 0.94026 0.90987 0.81495 1.21679 0.93582 1.34982 1.07676 0.92163 1.25964 0.99023 0.96145 0.98317 1.70088 1.22173 1.42150 1.22803 0.85385 0.78680 0.78799 0.77447 1.18186 1.20489 1.19923 0.86436 0.89069 0.91635 0.89415 0.91604 0.89242 0.86621 0.85827 0.88826 0.88604 0.87825 0.92980 0.91033 0.88611 0.96995 0.99380 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.89 71.98 0.64 -2.43 16 2 C -0.11 -3.40 1.57 29.85 0.05 -3.36 16 3 H 0.15 4.52 5.71 -2.39 -0.01 4.50 16 4 S 0.05 1.53 19.66 -56.46 -1.11 0.42 16 5 C 0.31 10.14 7.36 129.79 0.96 11.10 16 6 S -0.66 -27.31 26.25 -56.46 -1.48 -28.79 16 7 N -0.51 -12.21 3.34 -693.54 -2.31 -14.53 16 8 C 0.09 1.76 6.32 86.73 0.55 2.30 16 9 C -0.12 -1.14 6.95 31.78 0.22 -0.92 16 10 C -0.11 -0.76 7.08 31.98 0.23 -0.53 16 11 C 0.06 0.85 6.66 86.79 0.58 1.42 16 12 C 0.53 24.04 5.18 87.66 0.45 24.50 16 13 O -0.59 -32.59 15.71 -3.04 -0.05 -32.64 16 14 N -0.59 -28.25 2.86 -851.12 -2.43 -30.68 16 15 C 0.08 2.99 9.87 127.77 1.26 4.25 16 16 C 0.27 16.08 5.16 85.63 0.44 16.52 16 17 C -0.54 -32.67 9.39 25.60 0.24 -32.43 16 18 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 19 C 0.00 0.24 5.46 84.66 0.46 0.71 16 20 N -0.93 -59.39 13.29 21.45 0.28 -59.10 16 21 Si 0.97 46.14 29.54 68.60 2.03 48.17 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.14 6.97 -2.39 -0.02 2.12 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.26 7.55 -2.38 -0.02 1.24 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 38 H 0.10 2.65 5.23 -2.38 -0.01 2.64 16 39 H 0.01 0.74 8.07 -2.39 -0.02 0.72 16 40 H -0.01 -0.83 7.42 -2.39 -0.02 -0.84 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -89.19 358.41 2.01 -87.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.02 Total: 8.83 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.07 Total: 21.14 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -4.46 Total: -104.31 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: -25.78 SS G_CDS: -2.59 Total: -28.37 kcal Total: -89.19 2.01 -87.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078553108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.821 kcal (2) G-P(sol) polarization free energy of solvation -89.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds