Wall clock time and date at job start Tue Mar 31 2020 11:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 O 1.45202 * 109.47243 * 120.00466 * 2 1 3 13 13 C 1.34903 * 116.99331 * 270.00036 * 12 2 1 14 14 O 1.21624 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.46466 * 119.99610 * 180.02562 * 13 12 2 16 16 O 1.34939 * 126.00013 * 359.68166 * 15 13 12 17 17 C 1.33901 * 109.38398 * 179.89264 * 16 15 13 18 18 C 1.35166 * 108.78496 * 0.37960 * 17 16 15 19 19 C 1.36644 * 125.99616 * 179.97438 * 15 13 12 20 20 C 1.50705 * 126.64831 * 359.97438 * 19 15 13 21 21 O 1.42898 * 109.47177 * 180.02562 * 20 19 15 22 22 C 1.35896 * 116.99851 * 179.97438 * 21 20 19 23 23 C 1.38734 * 120.05773 * 359.72830 * 22 21 20 24 24 C 1.38139 * 119.94087 * 179.74565 * 23 22 21 25 25 C 1.38263 * 120.06132 * 0.50532 * 24 23 22 26 26 C 1.38271 * 120.10953 * 359.76490 * 25 24 23 27 27 C 1.38139 * 120.05354 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08007 * 125.61142 * 180.12588 * 17 16 15 33 33 H 1.08000 * 126.44580 * 179.75077 * 18 17 16 34 34 H 1.09000 * 109.46720 * 299.99839 * 20 19 15 35 35 H 1.08996 * 109.46643 * 59.99881 * 20 19 15 36 36 H 1.07995 * 120.02727 * 359.97438 * 23 22 21 37 37 H 1.08004 * 119.97070 * 180.27843 * 24 23 22 38 38 H 1.07999 * 119.95107 * 179.74996 * 25 24 23 39 39 H 1.07995 * 119.97016 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.02781 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 8 2.0141 -0.6846 1.1855 13 6 2.2182 0.0677 2.2865 14 8 1.9978 1.2634 2.2556 15 6 2.7063 -0.5553 3.5189 16 8 2.9842 -1.8647 3.6895 17 6 3.4093 -2.0693 4.9427 18 6 3.4030 -0.8895 5.6024 19 6 2.9549 0.0864 4.6994 20 6 2.7808 1.5573 4.9777 21 8 3.1475 1.8327 6.3311 22 6 3.0481 3.1226 6.7469 23 6 2.6120 4.1042 5.8688 24 6 2.5068 5.4138 6.2955 25 6 2.8457 5.7486 7.5935 26 6 3.2860 4.7731 8.4690 27 6 3.3878 3.4612 8.0488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 3.7044 -3.0211 5.3593 33 1 3.6892 -0.7283 6.6313 34 1 3.4172 2.1321 4.3050 35 1 1.7390 1.8361 4.8192 36 1 2.3514 3.8439 4.8535 37 1 2.1630 6.1775 5.6136 38 1 2.7666 6.7737 7.9241 39 1 3.5505 5.0372 9.4822 40 1 3.7321 2.6997 8.7328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:40 Heat of formation + Delta-G solvation = -81.242805 kcal Electronic energy + Delta-G solvation = -25214.902737 eV Core-core repulsion = 21348.219787 eV Total energy + Delta-G solvation = -3866.682951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73586 -40.17698 -39.40833 -37.59063 -35.96480 -33.70093 -33.29862 -31.21006 -30.62045 -30.00873 -29.44589 -27.14524 -25.37612 -23.76516 -22.75287 -22.43806 -21.51309 -20.58617 -19.66384 -18.22975 -18.02034 -16.71677 -16.60571 -16.51916 -16.07886 -15.74719 -15.67669 -15.35007 -14.76735 -14.57956 -14.53225 -13.63487 -13.54389 -13.37313 -12.99214 -12.95872 -12.76339 -12.31084 -12.08748 -12.02453 -11.73240 -11.46261 -11.29961 -11.13354 -10.97076 -10.89940 -10.42661 -10.35634 -10.11965 -9.79644 -9.66888 -9.16084 -8.98392 -8.70421 -8.54196 -8.33610 -6.23445 -4.30307 1.00656 1.18505 1.29499 2.27668 2.63636 2.99884 3.21579 3.25496 3.28603 3.33630 3.59269 3.64393 4.29821 4.49906 4.69258 4.76447 4.81667 4.99790 5.09507 5.10950 5.22733 5.28335 5.28647 5.34508 5.47279 5.49698 5.79011 5.83551 5.88311 6.16492 6.21255 6.26633 6.37795 6.52657 6.61762 6.79365 6.81814 6.88156 6.98443 7.27872 7.49200 7.63615 7.81280 8.05323 8.42829 8.79233 9.35099 10.84133 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002926 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.554693 B = 9567.041132 C =10888.824770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.050 0.950 4 C -0.521 4.521 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.340 6.340 13 C 0.537 3.463 14 O -0.498 6.498 15 C -0.033 4.033 16 O -0.140 6.140 17 C -0.008 4.008 18 C -0.205 4.205 19 C -0.101 4.101 20 C 0.132 3.868 21 O -0.313 6.313 22 C 0.134 3.866 23 C -0.207 4.207 24 C -0.078 4.078 25 C -0.163 4.163 26 C -0.084 4.084 27 C -0.155 4.155 28 H 0.017 0.983 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.213 0.787 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 2.946 20.567 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.255 6.255 13 C 0.381 3.619 14 O -0.390 6.390 15 C -0.084 4.084 16 O -0.033 6.033 17 C -0.078 4.078 18 C -0.224 4.224 19 C -0.103 4.103 20 C 0.058 3.942 21 O -0.226 6.226 22 C 0.089 3.911 23 C -0.226 4.226 24 C -0.097 4.097 25 C -0.181 4.181 26 C -0.102 4.102 27 C -0.173 4.173 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.179 0.821 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.102 3.005 20.187 20.818 hybrid contribution 0.165 -0.179 -0.869 0.902 sum 4.267 2.826 19.319 19.985 Atomic orbital electron populations 1.22186 0.97230 1.00383 1.01577 1.20800 0.91619 0.94009 0.77304 0.93198 1.21053 1.32595 1.13612 0.88680 0.91105 1.24885 0.94867 0.95098 0.99082 1.69899 1.36040 1.22518 1.24199 0.86193 0.78661 0.79511 0.81643 1.19425 1.20654 1.20696 1.86689 1.75227 1.42794 1.20825 1.19174 0.75100 0.84679 0.82951 1.90861 1.49462 1.14805 1.83894 1.20856 1.11025 0.81800 0.94765 1.84241 1.63322 1.25387 1.30391 1.24474 1.00643 1.00765 0.81929 1.21561 1.07684 0.91309 1.01815 1.20024 1.02242 0.95663 0.92408 1.20960 1.01631 0.90836 0.80801 1.85959 1.82549 1.24147 1.29980 1.19012 0.95536 0.83005 0.93593 1.21465 1.06489 0.93890 1.00750 1.21003 0.97114 0.95602 0.95937 1.21065 1.03295 0.99555 0.94187 1.20936 0.97815 0.91981 0.99511 1.20416 1.05929 0.97169 0.93831 0.96388 0.87990 0.94230 0.92364 0.77046 0.82137 0.89503 0.89538 0.84796 0.85673 0.86041 0.85533 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.33 37.16 0.35 -3.57 16 2 C 0.21 5.73 2.57 -27.88 -0.07 5.66 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.61 8.90 -34.44 -0.31 -14.91 16 5 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.30 16 8 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 O -0.34 -8.30 9.88 -42.49 -0.42 -8.72 16 13 C 0.54 11.57 7.90 34.04 0.27 11.84 16 14 O -0.50 -11.19 14.79 -19.36 -0.29 -11.48 16 15 C -0.03 -0.59 7.18 -36.85 -0.26 -0.86 16 16 O -0.14 -2.23 10.67 4.77 0.05 -2.18 16 17 C -0.01 -0.09 12.08 29.64 0.36 0.27 16 18 C -0.20 -2.49 10.24 -39.89 -0.41 -2.90 16 19 C -0.10 -1.54 6.16 -104.42 -0.64 -2.18 16 20 C 0.13 1.90 3.95 36.01 0.14 2.04 16 21 O -0.31 -4.19 9.57 -19.41 -0.19 -4.37 16 22 C 0.13 1.68 6.69 -39.21 -0.26 1.42 16 23 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 24 C -0.08 -0.83 10.04 -39.61 -0.40 -1.22 16 25 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 26 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 27 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.21 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.16 1.59 7.98 -52.49 -0.42 1.18 16 34 H 0.09 1.28 7.56 -51.93 -0.39 0.88 16 35 H 0.09 1.26 7.59 -51.93 -0.39 0.86 16 36 H 0.13 1.66 6.30 -52.49 -0.33 1.33 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -31.11 351.87 -7.54 -38.65 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.73 Total: 1.95 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.88 Total: -10.80 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.84 Total: -26.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.11 -7.54 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.597 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds