Wall clock time and date at job start Tue Mar 31 2020 11:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 O 1.45202 * 109.47243 * 120.00466 * 2 1 3 13 13 C 1.34903 * 116.99331 * 270.00036 * 12 2 1 14 14 O 1.21624 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.46466 * 119.99610 * 180.02562 * 13 12 2 16 16 O 1.34939 * 126.00013 * 359.68166 * 15 13 12 17 17 C 1.33901 * 109.38398 * 179.89264 * 16 15 13 18 18 C 1.35166 * 108.78496 * 0.37960 * 17 16 15 19 19 C 1.36644 * 125.99616 * 179.97438 * 15 13 12 20 20 C 1.50705 * 126.64831 * 359.97438 * 19 15 13 21 21 O 1.42898 * 109.47177 * 180.02562 * 20 19 15 22 22 C 1.35896 * 116.99851 * 179.97438 * 21 20 19 23 23 C 1.38734 * 120.05773 * 359.72830 * 22 21 20 24 24 C 1.38139 * 119.94087 * 179.74565 * 23 22 21 25 25 C 1.38263 * 120.06132 * 0.50532 * 24 23 22 26 26 C 1.38271 * 120.10953 * 359.76490 * 25 24 23 27 27 C 1.38139 * 120.05354 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08007 * 125.61142 * 180.12588 * 17 16 15 33 33 H 1.08000 * 126.44580 * 179.75077 * 18 17 16 34 34 H 1.09000 * 109.46720 * 299.99839 * 20 19 15 35 35 H 1.08996 * 109.46643 * 59.99881 * 20 19 15 36 36 H 1.07995 * 120.02727 * 359.97438 * 23 22 21 37 37 H 1.08004 * 119.97070 * 180.27843 * 24 23 22 38 38 H 1.07999 * 119.95107 * 179.74996 * 25 24 23 39 39 H 1.07995 * 119.97016 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.02781 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 8 2.0141 -0.6846 1.1855 13 6 2.2182 0.0677 2.2865 14 8 1.9978 1.2634 2.2556 15 6 2.7063 -0.5553 3.5189 16 8 2.9842 -1.8647 3.6895 17 6 3.4093 -2.0693 4.9427 18 6 3.4030 -0.8895 5.6024 19 6 2.9549 0.0864 4.6994 20 6 2.7808 1.5573 4.9777 21 8 3.1475 1.8327 6.3311 22 6 3.0481 3.1226 6.7469 23 6 2.6120 4.1042 5.8688 24 6 2.5068 5.4138 6.2955 25 6 2.8457 5.7486 7.5935 26 6 3.2860 4.7731 8.4690 27 6 3.3878 3.4612 8.0488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 3.7044 -3.0211 5.3593 33 1 3.6892 -0.7283 6.6313 34 1 3.4172 2.1321 4.3050 35 1 1.7390 1.8361 4.8192 36 1 2.3514 3.8439 4.8535 37 1 2.1630 6.1775 5.6136 38 1 2.7666 6.7737 7.9241 39 1 3.5505 5.0372 9.4822 40 1 3.7321 2.6997 8.7328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:39 Heat of formation + Delta-G solvation = -98.007515 kcal Electronic energy + Delta-G solvation = -25215.629710 eV Core-core repulsion = 21348.219787 eV Total energy + Delta-G solvation = -3867.409923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.90151 -41.18954 -41.07775 -38.50823 -37.77400 -35.41283 -34.81163 -32.16137 -31.97856 -31.27886 -30.77023 -28.33623 -27.49831 -25.22409 -23.64008 -23.42010 -22.91914 -22.01039 -21.09307 -19.52836 -19.14825 -18.65458 -18.05008 -17.84833 -17.25018 -16.90309 -16.86248 -16.52757 -16.41687 -16.27227 -15.39593 -15.03824 -14.52630 -14.42974 -14.34067 -14.24402 -14.03031 -13.91031 -13.76207 -13.28173 -13.09374 -13.06433 -12.85373 -12.49424 -12.44944 -12.41766 -12.19160 -11.94820 -11.74621 -11.69410 -11.06358 -10.88456 -10.64664 -9.97350 -9.85476 -9.22388 -8.32613 -6.49572 -0.31884 0.37267 0.46018 1.24753 1.32750 1.41428 1.42529 1.56412 1.69686 1.93600 2.12203 2.40649 2.82827 2.98222 3.45083 3.69976 3.80315 3.87007 3.97869 4.08151 4.08438 4.28153 4.32016 4.42544 4.47856 4.51953 4.63042 4.69955 4.73284 4.76487 4.88602 5.03210 5.07878 5.25170 5.34023 5.41324 5.47764 5.54285 5.58877 5.70685 5.79703 5.83908 5.96220 6.32033 6.51241 6.74651 7.21207 8.75521 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002926 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.554693 B = 9567.041132 C =10888.824770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.985 3.015 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.274 1.274 12 O -0.354 6.354 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.083 4.083 16 O -0.159 6.159 17 C 0.032 3.968 18 C -0.213 4.213 19 C -0.084 4.084 20 C 0.138 3.862 21 O -0.312 6.312 22 C 0.106 3.894 23 C -0.229 4.229 24 C -0.090 4.090 25 C -0.159 4.159 26 C -0.080 4.080 27 C -0.158 4.158 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.273 0.727 32 H 0.271 0.729 33 H 0.190 0.810 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 2.063 22.898 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.588 4.588 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.807 3.193 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.199 1.199 12 O -0.270 6.270 13 C 0.378 3.622 14 O -0.416 6.416 15 C -0.133 4.133 16 O -0.053 6.053 17 C -0.038 4.038 18 C -0.232 4.232 19 C -0.086 4.086 20 C 0.063 3.937 21 O -0.227 6.227 22 C 0.061 3.939 23 C -0.248 4.248 24 C -0.108 4.108 25 C -0.177 4.177 26 C -0.098 4.098 27 C -0.177 4.177 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.286 0.714 33 H 0.207 0.793 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.214 2.137 22.545 23.238 hybrid contribution -0.127 0.158 -1.353 1.368 sum 5.086 2.295 21.192 21.914 Atomic orbital electron populations 1.22009 0.96379 1.00555 1.01141 1.20522 0.92297 0.92344 0.78413 0.96641 1.21290 1.33651 1.14010 0.89859 0.91654 1.25823 0.94624 0.95672 1.02044 1.70005 1.36389 1.23483 1.25339 0.85109 0.78413 0.78386 0.77344 1.18922 1.19444 1.19913 1.86656 1.76023 1.43097 1.21206 1.19710 0.74524 0.84669 0.83256 1.90826 1.50666 1.15673 1.84387 1.20191 1.15919 0.83250 0.93923 1.84223 1.64018 1.24292 1.32801 1.25682 0.95915 1.02570 0.79596 1.21921 1.07948 0.90568 1.02718 1.20295 0.99950 0.96297 0.92099 1.20735 1.00803 0.90599 0.81585 1.85918 1.82922 1.25003 1.28809 1.19337 0.97275 0.82584 0.94727 1.21504 1.07852 0.95106 1.00338 1.21263 0.97295 0.95092 0.97197 1.21461 1.01751 1.01135 0.93384 1.21381 0.96340 0.91087 1.00972 1.20739 1.05402 0.98490 0.93030 0.95526 0.89584 0.93589 0.91812 0.71377 0.79307 0.90708 0.90541 0.86464 0.84470 0.83219 0.82100 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 2 C 0.22 12.24 2.57 29.85 0.08 12.32 16 3 H 0.02 0.97 7.16 -2.39 -0.02 0.96 16 4 C -0.55 -31.94 8.90 25.60 0.23 -31.71 16 5 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 O -0.35 -18.28 9.88 -56.80 -0.56 -18.84 16 13 C 0.53 24.46 7.90 69.97 0.55 25.01 16 14 O -0.52 -25.41 14.79 19.43 0.29 -25.13 16 15 C -0.08 -3.03 7.18 24.04 0.17 -2.86 16 16 O -0.16 -4.95 10.67 -4.80 -0.05 -5.00 16 17 C 0.03 0.61 12.08 67.11 0.81 1.42 16 18 C -0.21 -4.64 10.24 22.07 0.23 -4.41 16 19 C -0.08 -2.57 6.16 -19.73 -0.12 -2.69 16 20 C 0.14 4.17 3.95 71.24 0.28 4.46 16 21 O -0.31 -8.40 9.57 -92.38 -0.88 -9.29 16 22 C 0.11 2.66 6.69 22.51 0.15 2.81 16 23 C -0.23 -5.88 9.04 22.36 0.20 -5.68 16 24 C -0.09 -1.88 10.04 22.25 0.22 -1.65 16 25 C -0.16 -2.60 10.04 22.28 0.22 -2.38 16 26 C -0.08 -1.23 10.04 22.25 0.22 -1.01 16 27 C -0.16 -3.08 9.99 22.37 0.22 -2.86 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 4.78 6.07 -2.39 -0.01 4.76 16 30 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 32 H 0.27 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.19 3.03 7.98 -2.91 -0.02 3.01 16 34 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 35 H 0.08 2.44 7.59 -2.39 -0.02 2.42 16 36 H 0.12 3.28 6.30 -2.91 -0.02 3.26 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -71.76 351.87 6.72 -65.04 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.06 Total: 14.85 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.59 Total: -14.62 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.24 Total: -52.25 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -1.21 Total: -58.25 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.76 6.72 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.963 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds