Wall clock time and date at job start Tue Mar 31 2020 10:46:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99770 * 2 1
4 4 H 1.48506 * 109.47017 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47599 * 300.00334 * 3 2 1
6 6 H 1.48504 * 109.46983 * 60.00320 * 3 2 1
7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99699 * 179.97438 * 7 2 1
9 9 C 1.50698 * 119.99850 * 359.97438 * 7 2 1
10 10 C 1.53007 * 109.46787 * 180.02562 * 9 7 2
11 11 H 1.08996 * 109.46846 * 304.99505 * 10 9 7
12 12 N 1.46895 * 109.47267 * 65.00115 * 10 9 7
13 13 C 1.46904 * 110.99686 * 205.00045 * 12 10 9
14 14 C 1.50707 * 109.46797 * 179.97438 * 13 12 10
15 15 C 1.38711 * 120.40615 * 269.97800 * 14 13 12
16 16 C 1.38568 * 118.43748 * 179.75572 * 15 14 13
17 17 C 1.38397 * 119.14747 * 0.53020 * 16 15 14
18 18 Cl 1.73599 * 119.63613 * 179.73521 * 17 16 15
19 19 N 1.31950 * 120.73033 * 359.45465 * 17 16 15
20 20 C 1.31905 * 121.70652 * 0.27873 * 19 17 16
21 21 C 1.50707 * 109.46626 * 184.99989 * 10 9 7
22 22 C 1.38232 * 119.99578 * 279.71933 * 21 10 9
23 23 C 1.38234 * 119.99578 * 179.79236 * 22 21 10
24 24 C 1.38239 * 119.99899 * 0.44496 * 23 22 21
25 25 C 1.38230 * 120.00163 * 359.80992 * 24 23 22
26 26 C 1.38233 * 119.99956 * 100.00093 * 21 10 9
27 27 H 0.96993 * 119.99940 * 359.97438 * 1 2 3
28 28 H 1.08996 * 109.47576 * 60.00555 * 9 7 2
29 29 H 1.09003 * 109.47303 * 299.99716 * 9 7 2
30 30 H 1.00900 * 111.00295 * 81.04551 * 12 10 9
31 31 H 1.09003 * 109.47142 * 60.00046 * 13 12 10
32 32 H 1.08998 * 109.47251 * 299.99215 * 13 12 10
33 33 H 1.08002 * 120.77671 * 0.04211 * 15 14 13
34 34 H 1.07990 * 120.42443 * 180.26472 * 16 15 14
35 35 H 1.08005 * 119.60793 * 179.97438 * 20 19 17
36 36 H 1.07997 * 120.00515 * 0.02562 * 22 21 10
37 37 H 1.08003 * 120.00207 * 180.28209 * 23 22 21
38 38 H 1.08000 * 119.99955 * 179.83633 * 24 23 22
39 39 H 1.07999 * 120.00354 * 179.97438 * 25 24 23
40 40 H 1.07998 * 120.00029 * 359.97438 * 26 21 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3966 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 1 2.9294 -3.5552 -0.8424
12 7 3.0084 -3.6539 1.2546
13 6 4.3096 -4.3141 1.0839
14 6 5.0623 -4.2857 2.3893
15 6 5.9045 -3.2256 2.6912
16 6 6.5726 -3.2387 3.9051
17 6 6.3873 -4.3071 4.7650
18 17 7.2235 -4.3398 6.2860
19 7 5.5779 -5.2985 4.4440
20 6 4.9224 -5.3154 3.2995
21 6 1.4959 -4.9637 -0.1244
22 6 0.8992 -5.5261 0.9885
23 6 0.2081 -6.7178 0.8740
24 6 0.1216 -7.3517 -0.3514
25 6 0.7227 -6.7919 -1.4632
26 6 1.4101 -5.5980 -1.3496
27 1 -0.4850 0.8400 0.0004
28 1 0.6241 -2.5568 -0.8903
29 1 0.6247 -2.5571 0.8897
30 1 2.4812 -4.0814 2.0012
31 1 4.8857 -3.7900 0.3213
32 1 4.1548 -5.3481 0.7759
33 1 6.0327 -2.4070 1.9984
34 1 7.2328 -2.4277 4.1747
35 1 4.2687 -6.1444 3.0711
36 1 0.9698 -5.0327 1.9465
37 1 -0.2620 -7.1551 1.7425
38 1 -0.4161 -8.2841 -0.4403
39 1 0.6555 -7.2873 -2.4205
40 1 1.8798 -5.1606 -2.2182
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000130579332.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:03
Heat of formation + Delta-G solvation = 49.399790 kcal
Electronic energy + Delta-G solvation = -22946.759936 eV
Core-core repulsion = 19558.743989 eV
Total energy + Delta-G solvation = -3388.015947 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.104 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.35856 -39.25758 -36.85021 -36.19897 -33.52783 -32.51466 -31.91534 -30.70458
-29.94956 -28.66926 -25.59748 -24.14598 -23.82580 -22.49328 -21.92563 -21.57896
-19.74453 -17.51075 -17.15705 -16.70776 -16.10771 -15.44191 -15.22117 -14.89126
-14.52273 -14.50382 -14.22093 -13.92421 -13.64596 -13.25616 -13.10740 -12.85221
-12.58729 -12.20455 -12.11136 -11.93413 -11.70399 -11.40652 -11.22151 -11.06949
-10.87322 -10.72425 -10.53990 -10.22897 -9.94989 -9.70468 -9.65886 -9.09547
-8.93747 -8.68259 -8.32129 -8.28305 -7.85074 -5.93491 -3.92255 0.82572
1.12621 1.63605 1.64723 1.72148 3.34115 3.42020 3.44874 3.54009
4.05212 4.37142 4.51213 4.60431 4.79136 4.85093 4.92188 5.06584
5.12153 5.15621 5.25187 5.37874 5.41345 5.44475 5.63899 5.74448
5.77879 5.82583 5.86912 6.01429 6.22324 6.25898 6.31950 6.42156
6.69349 6.71812 6.72670 6.90246 7.26394 7.37809 7.57360 7.61247
7.86061 7.90200 8.06393 8.49152 9.12516 9.69350 11.18348
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.008013 B = 0.004528 C = 0.003078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3493.413079 B = 6182.053977 C = 9095.212960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.052 3.948
3 Si 0.889 3.111
4 H -0.274 1.274
5 H -0.287 1.287
6 H -0.287 1.287
7 C -0.491 4.491
8 H 0.060 0.940
9 C 0.042 3.958
10 C 0.130 3.870
11 H 0.077 0.923
12 N -0.653 5.653
13 C 0.098 3.902
14 C -0.117 4.117
15 C -0.039 4.039
16 C -0.154 4.154
17 C 0.167 3.833
18 Cl -0.042 7.042
19 N -0.480 5.480
20 C 0.120 3.880
21 C -0.092 4.092
22 C -0.120 4.120
23 C -0.118 4.118
24 C -0.136 4.136
25 C -0.121 4.121
26 C -0.117 4.117
27 H 0.257 0.743
28 H 0.020 0.980
29 H 0.019 0.981
30 H 0.335 0.665
31 H 0.084 0.916
32 H 0.037 0.963
33 H 0.150 0.850
34 H 0.144 0.856
35 H 0.161 0.839
36 H 0.120 0.880
37 H 0.116 0.884
38 H 0.114 0.886
39 H 0.116 0.884
40 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.575 -12.743 3.723 16.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.148 4.148
3 Si 0.718 3.282
4 H -0.198 1.198
5 H -0.214 1.214
6 H -0.213 1.213
7 C -0.529 4.529
8 H 0.078 0.922
9 C 0.005 3.995
10 C 0.021 3.979
11 H 0.095 0.905
12 N -0.284 5.284
13 C -0.031 4.031
14 C -0.119 4.119
15 C -0.065 4.065
16 C -0.175 4.175
17 C 0.003 3.997
18 Cl -0.014 7.014
19 N -0.191 5.191
20 C -0.038 4.038
21 C -0.094 4.094
22 C -0.139 4.139
23 C -0.136 4.136
24 C -0.154 4.154
25 C -0.139 4.139
26 C -0.135 4.135
27 H 0.067 0.933
28 H 0.038 0.962
29 H 0.037 0.963
30 H 0.155 0.845
31 H 0.102 0.898
32 H 0.055 0.945
33 H 0.167 0.833
34 H 0.162 0.838
35 H 0.178 0.822
36 H 0.138 0.862
37 H 0.134 0.866
38 H 0.132 0.868
39 H 0.134 0.866
40 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 9.664 -12.667 4.358 16.518
hybrid contribution 0.127 0.707 -0.383 0.814
sum 9.791 -11.960 3.975 15.960
Atomic orbital electron populations
1.69971 1.05994 1.26226 1.51942 1.24993 0.94753 0.99052 0.95981
0.86582 0.80089 0.84206 0.77325 1.19849 1.21382 1.21294 1.21113
0.93135 0.90053 1.48610 0.92198 1.19097 0.92727 0.90347 0.97369
1.21003 0.94932 0.91066 0.90947 0.90493 1.60753 1.03045 1.57249
1.07372 1.20891 0.92008 0.97669 0.92560 1.21028 0.97628 0.94999
0.98266 1.21597 0.92327 0.97215 0.95370 1.21853 1.02401 0.98720
0.94481 1.21589 0.95919 0.92823 0.89382 1.98391 1.75166 1.98219
1.29576 1.66965 1.06987 1.25919 1.19223 1.22554 0.95859 0.97807
0.87554 1.21145 0.97862 0.97107 0.93302 1.20963 0.98382 0.95775
0.98743 1.21067 0.99294 0.95802 0.97454 1.21026 1.01006 1.00173
0.93205 1.21090 0.98276 0.96250 0.98252 1.21081 0.99888 0.95203
0.97348 0.93292 0.96161 0.96257 0.84550 0.89750 0.94460 0.83276
0.83846 0.82220 0.86238 0.86559 0.86758 0.86625 0.86220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16
2 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16
3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16
4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
7 C -0.49 -13.07 8.84 -34.44 -0.30 -13.37 16
8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16
9 C 0.04 1.01 4.63 -27.88 -0.13 0.88 16
10 C 0.13 2.38 2.17 -68.86 -0.15 2.23 16
11 H 0.08 1.41 7.66 -51.93 -0.40 1.01 16
12 N -0.65 -10.81 5.93 -109.21 -0.65 -11.46 16
13 C 0.10 1.30 5.63 -4.97 -0.03 1.28 16
14 C -0.12 -1.47 5.41 -104.48 -0.57 -2.04 16
15 C -0.04 -0.47 9.86 -39.28 -0.39 -0.86 16
16 C -0.15 -1.79 9.88 -39.40 -0.39 -2.18 16
17 C 0.17 2.17 7.27 -17.44 -0.13 2.04 16
18 Cl -0.04 -0.49 29.11 -51.86 -1.51 -1.99 16
19 N -0.48 -6.66 10.34 -10.36 -0.11 -6.77 16
20 C 0.12 1.50 10.86 -17.55 -0.19 1.31 16
21 C -0.09 -1.50 4.71 -104.62 -0.49 -1.99 16
22 C -0.12 -1.82 9.12 -39.59 -0.36 -2.18 16
23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16
24 C -0.14 -1.73 10.05 -39.58 -0.40 -2.12 16
25 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16
26 C -0.12 -1.74 9.67 -39.58 -0.38 -2.13 16
27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
30 H 0.33 5.32 6.33 -39.29 -0.25 5.08 16
31 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16
32 H 0.04 0.46 7.95 -51.93 -0.41 0.05 16
33 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16
34 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16
35 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16
36 H 0.12 1.76 6.50 -52.49 -0.34 1.41 16
37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16
38 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16
39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16
40 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16
LS Contribution 358.35 15.07 5.40 5.40
Total: -1.00 -30.38 358.35 -11.11 -41.49
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -5.16 Total: 4.62 kcal
Atomic # 6 Polarization: -16.94 SS G_CDS: -4.80 Total: -21.74 kcal
Atomic # 7 Polarization: -44.10 SS G_CDS: -0.02 Total: -44.12 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -1.99 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -30.38 -11.11 -41.49 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130579332.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.888 kcal
(2) G-P(sol) polarization free energy of solvation -30.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds