Wall clock time and date at job start Tue Mar 31 2020 10:46:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99770 * 2 1
4 4 H 1.48506 * 109.47017 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47599 * 300.00334 * 3 2 1
6 6 H 1.48504 * 109.46983 * 60.00320 * 3 2 1
7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99699 * 179.97438 * 7 2 1
9 9 C 1.50698 * 119.99850 * 359.97438 * 7 2 1
10 10 C 1.53007 * 109.46787 * 180.02562 * 9 7 2
11 11 H 1.08996 * 109.46846 * 304.99505 * 10 9 7
12 12 N 1.46895 * 109.47267 * 65.00115 * 10 9 7
13 13 C 1.46904 * 110.99686 * 205.00045 * 12 10 9
14 14 C 1.50707 * 109.46797 * 179.97438 * 13 12 10
15 15 C 1.38711 * 120.40615 * 269.97800 * 14 13 12
16 16 C 1.38568 * 118.43748 * 179.75572 * 15 14 13
17 17 C 1.38397 * 119.14747 * 0.53020 * 16 15 14
18 18 Cl 1.73599 * 119.63613 * 179.73521 * 17 16 15
19 19 N 1.31950 * 120.73033 * 359.45465 * 17 16 15
20 20 C 1.31905 * 121.70652 * 0.27873 * 19 17 16
21 21 C 1.50707 * 109.46626 * 184.99989 * 10 9 7
22 22 C 1.38232 * 119.99578 * 279.71933 * 21 10 9
23 23 C 1.38234 * 119.99578 * 179.79236 * 22 21 10
24 24 C 1.38239 * 119.99899 * 0.44496 * 23 22 21
25 25 C 1.38230 * 120.00163 * 359.80992 * 24 23 22
26 26 C 1.38233 * 119.99956 * 100.00093 * 21 10 9
27 27 H 0.96993 * 119.99940 * 359.97438 * 1 2 3
28 28 H 1.08996 * 109.47576 * 60.00555 * 9 7 2
29 29 H 1.09003 * 109.47303 * 299.99716 * 9 7 2
30 30 H 1.00900 * 111.00295 * 81.04551 * 12 10 9
31 31 H 1.09003 * 109.47142 * 60.00046 * 13 12 10
32 32 H 1.08998 * 109.47251 * 299.99215 * 13 12 10
33 33 H 1.08002 * 120.77671 * 0.04211 * 15 14 13
34 34 H 1.07990 * 120.42443 * 180.26472 * 16 15 14
35 35 H 1.08005 * 119.60793 * 179.97438 * 20 19 17
36 36 H 1.07997 * 120.00515 * 0.02562 * 22 21 10
37 37 H 1.08003 * 120.00207 * 180.28209 * 23 22 21
38 38 H 1.08000 * 119.99955 * 179.83633 * 24 23 22
39 39 H 1.07999 * 120.00354 * 179.97438 * 25 24 23
40 40 H 1.07998 * 120.00029 * 359.97438 * 26 21 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3966 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 1 2.9294 -3.5552 -0.8424
12 7 3.0084 -3.6539 1.2546
13 6 4.3096 -4.3141 1.0839
14 6 5.0623 -4.2857 2.3893
15 6 5.9045 -3.2256 2.6912
16 6 6.5726 -3.2387 3.9051
17 6 6.3873 -4.3071 4.7650
18 17 7.2235 -4.3398 6.2860
19 7 5.5779 -5.2985 4.4440
20 6 4.9224 -5.3154 3.2995
21 6 1.4959 -4.9637 -0.1244
22 6 0.8992 -5.5261 0.9885
23 6 0.2081 -6.7178 0.8740
24 6 0.1216 -7.3517 -0.3514
25 6 0.7227 -6.7919 -1.4632
26 6 1.4101 -5.5980 -1.3496
27 1 -0.4850 0.8400 0.0004
28 1 0.6241 -2.5568 -0.8903
29 1 0.6247 -2.5571 0.8897
30 1 2.4812 -4.0814 2.0012
31 1 4.8857 -3.7900 0.3213
32 1 4.1548 -5.3481 0.7759
33 1 6.0327 -2.4070 1.9984
34 1 7.2328 -2.4277 4.1747
35 1 4.2687 -6.1444 3.0711
36 1 0.9698 -5.0327 1.9465
37 1 -0.2620 -7.1551 1.7425
38 1 -0.4161 -8.2841 -0.4403
39 1 0.6555 -7.2873 -2.4205
40 1 1.8798 -5.1606 -2.2182
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000130579332.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:02
Heat of formation + Delta-G solvation = 32.983474 kcal
Electronic energy + Delta-G solvation = -22947.471801 eV
Core-core repulsion = 19558.743989 eV
Total energy + Delta-G solvation = -3388.727812 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.104 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.34029 -40.41086 -37.84941 -37.39066 -35.10877 -33.99194 -33.03201 -31.78338
-31.03682 -30.37344 -27.00013 -25.60210 -24.78726 -23.76330 -23.27803 -22.63508
-21.12674 -18.66572 -18.40982 -17.85735 -17.62156 -16.70860 -16.42896 -16.28214
-15.98591 -15.54415 -15.34225 -14.95900 -14.86360 -14.39876 -14.21068 -14.15987
-14.04349 -13.63621 -13.38223 -13.24296 -12.81917 -12.74186 -12.65218 -12.38665
-12.33728 -12.25299 -12.01289 -11.71456 -11.45625 -11.09495 -10.91435 -10.63909
-10.47985 -9.94236 -9.76379 -9.49075 -9.13717 -8.07249 -6.12499 -0.14206
0.17107 0.52848 0.55797 0.77775 1.43506 1.44996 1.56634 2.49154
2.55692 2.95341 3.26169 3.43738 3.49846 3.77297 3.86654 3.95959
3.96761 4.04274 4.12254 4.22522 4.34043 4.45973 4.56596 4.67942
4.69965 4.76560 4.79830 4.91776 5.02100 5.18546 5.21413 5.27693
5.47691 5.52085 5.61600 5.64526 5.66504 5.72712 5.91840 6.18808
6.28816 6.42824 6.59187 6.65440 7.01952 7.53498 9.05041
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.008013 B = 0.004528 C = 0.003078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3493.413079 B = 6182.053977 C = 9095.212960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.942 5.942
2 C -0.006 4.006
3 Si 0.955 3.045
4 H -0.258 1.258
5 H -0.285 1.285
6 H -0.288 1.288
7 C -0.494 4.494
8 H 0.065 0.935
9 C 0.051 3.949
10 C 0.147 3.853
11 H 0.074 0.926
12 N -0.668 5.668
13 C 0.108 3.892
14 C -0.122 4.122
15 C -0.045 4.045
16 C -0.150 4.150
17 C 0.154 3.846
18 Cl -0.034 7.034
19 N -0.501 5.501
20 C 0.118 3.882
21 C -0.112 4.112
22 C -0.133 4.133
23 C -0.121 4.121
24 C -0.132 4.132
25 C -0.121 4.121
26 C -0.131 4.131
27 H 0.257 0.743
28 H -0.012 1.012
29 H -0.012 1.012
30 H 0.336 0.664
31 H 0.085 0.915
32 H 0.050 0.950
33 H 0.158 0.842
34 H 0.167 0.833
35 H 0.176 0.824
36 H 0.115 0.885
37 H 0.140 0.860
38 H 0.146 0.854
39 H 0.143 0.857
40 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.679 -13.846 3.674 17.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.202 4.202
3 Si 0.782 3.218
4 H -0.182 1.182
5 H -0.211 1.211
6 H -0.214 1.214
7 C -0.532 4.532
8 H 0.083 0.917
9 C 0.014 3.986
10 C 0.037 3.963
11 H 0.093 0.907
12 N -0.299 5.299
13 C -0.021 4.021
14 C -0.124 4.124
15 C -0.071 4.071
16 C -0.171 4.171
17 C -0.010 4.010
18 Cl -0.006 7.006
19 N -0.212 5.212
20 C -0.039 4.039
21 C -0.114 4.114
22 C -0.152 4.152
23 C -0.139 4.139
24 C -0.150 4.150
25 C -0.139 4.139
26 C -0.150 4.150
27 H 0.066 0.934
28 H 0.006 0.994
29 H 0.006 0.994
30 H 0.156 0.844
31 H 0.103 0.897
32 H 0.068 0.932
33 H 0.176 0.824
34 H 0.184 0.816
35 H 0.193 0.807
36 H 0.133 0.867
37 H 0.158 0.842
38 H 0.164 0.836
39 H 0.161 0.839
40 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 10.796 -13.783 4.311 18.031
hybrid contribution -0.239 0.974 -0.348 1.061
sum 10.557 -12.809 3.963 17.066
Atomic orbital electron populations
1.70116 1.07728 1.26990 1.53607 1.25859 0.95520 1.02854 0.95953
0.85537 0.79505 0.79739 0.77057 1.18221 1.21144 1.21401 1.21503
0.93490 0.91123 1.47113 0.91694 1.18880 0.93137 0.92425 0.94196
1.20472 0.93807 0.90201 0.91770 0.90738 1.60599 1.04153 1.58577
1.06592 1.20806 0.90202 0.98026 0.93091 1.20975 0.97967 0.95489
0.98006 1.21801 0.92221 0.97291 0.95806 1.22079 1.02255 0.98889
0.93865 1.21855 0.96030 0.93106 0.89988 1.98389 1.74912 1.98205
1.29055 1.66987 1.07735 1.26658 1.19841 1.22790 0.95733 0.98230
0.87143 1.20937 0.99245 0.96707 0.94535 1.21045 0.99063 0.96764
0.98285 1.21381 0.98604 0.95022 0.98892 1.21448 1.00053 1.00957
0.92500 1.21430 0.97217 0.95437 0.99811 1.21255 1.00611 0.96218
0.96899 0.93429 0.99423 0.99408 0.84369 0.89679 0.93224 0.82439
0.81563 0.80703 0.86705 0.84218 0.83583 0.83900 0.85917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16
2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16
3 Si 0.96 44.16 29.54 68.60 2.03 46.18 16
4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16
5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16
6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16
7 C -0.49 -26.81 8.84 25.60 0.23 -26.59 16
8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
9 C 0.05 2.57 4.63 29.85 0.14 2.71 16
10 C 0.15 5.52 2.17 44.17 0.10 5.61 16
11 H 0.07 2.77 7.66 -2.39 -0.02 2.75 16
12 N -0.67 -22.22 5.93 -499.43 -2.96 -25.18 16
13 C 0.11 2.77 5.63 85.56 0.48 3.26 16
14 C -0.12 -2.95 5.41 -19.77 -0.11 -3.06 16
15 C -0.04 -1.03 9.86 22.46 0.22 -0.81 16
16 C -0.15 -3.26 9.88 22.39 0.22 -3.04 16
17 C 0.15 3.81 7.27 84.71 0.62 4.43 16
18 Cl -0.03 -0.75 29.11 -2.72 -0.08 -0.83 16
19 N -0.50 -13.40 10.34 -186.69 -1.93 -15.33 16
20 C 0.12 2.84 10.86 84.66 0.92 3.76 16
21 C -0.11 -3.67 4.71 -19.86 -0.09 -3.77 16
22 C -0.13 -3.99 9.12 22.27 0.20 -3.79 16
23 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16
24 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16
25 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16
26 C -0.13 -3.84 9.67 22.27 0.22 -3.62 16
27 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16
28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16
29 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16
30 H 0.34 10.86 6.33 -89.69 -0.57 10.29 16
31 H 0.08 2.17 8.01 -2.39 -0.02 2.15 16
32 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16
33 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16
34 H 0.17 2.73 8.06 -2.92 -0.02 2.71 16
35 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16
36 H 0.12 3.45 6.50 -2.91 -0.02 3.43 16
37 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16
38 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16
39 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16
40 H 0.12 3.39 8.04 -2.91 -0.02 3.36 16
Total: -1.00 -66.40 358.35 2.09 -64.31
By element:
Atomic # 1 Polarization: 20.40 SS G_CDS: 0.48 Total: 20.88 kcal
Atomic # 6 Polarization: -37.26 SS G_CDS: 4.27 Total: -32.99 kcal
Atomic # 7 Polarization: -92.95 SS G_CDS: -4.61 Total: -97.56 kcal
Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal
Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal
Total: -66.40 2.09 -64.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130579332.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.295 kcal
(2) G-P(sol) polarization free energy of solvation -66.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds