Wall clock time and date at job start Tue Mar 31 2020 10:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48505 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47183 * 299.99447 * 3 2 1 6 6 H 1.48496 * 109.47442 * 59.99771 * 3 2 1 7 7 C 1.37881 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46580 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99981 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47158 * 34.99707 * 12 11 10 14 14 C 1.50699 * 109.46960 * 274.99581 * 12 11 10 15 15 C 1.38266 * 119.99684 * 319.72414 * 14 12 11 16 16 C 1.38216 * 120.02788 * 179.76610 * 15 14 12 17 17 C 1.38233 * 120.01344 * 0.51277 * 16 15 14 18 18 C 1.38332 * 119.98837 * 359.74339 * 17 16 15 19 19 Cl 1.73599 * 120.01645 * 180.02562 * 18 17 16 20 20 C 1.38200 * 119.99311 * 140.00132 * 14 12 11 21 21 C 1.50706 * 109.47189 * 154.99903 * 12 11 10 22 22 C 1.38227 * 119.61686 * 245.02517 * 21 12 11 23 23 C 1.38627 * 119.15663 * 179.70253 * 22 21 12 24 24 C 1.38669 * 118.42388 * 0.51169 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.50231 * 24 23 22 26 26 N 1.31856 * 119.61480 * 64.99435 * 21 12 11 27 27 H 0.96997 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47176 * 59.99996 * 9 7 2 29 29 H 1.09002 * 109.46687 * 299.99544 * 9 7 2 30 30 H 1.08991 * 109.47914 * 59.99904 * 10 9 7 31 31 H 1.09002 * 109.47189 * 299.99176 * 10 9 7 32 32 H 1.00896 * 111.00012 * 56.04239 * 11 10 9 33 33 H 1.07997 * 119.98154 * 0.02562 * 15 14 12 34 34 H 1.08003 * 119.99406 * 180.25904 * 16 15 14 35 35 H 1.07998 * 120.00925 * 179.72758 * 17 16 15 36 36 H 1.07999 * 120.00362 * 0.02562 * 20 14 12 37 37 H 1.07997 * 120.41943 * 359.97438 * 22 21 12 38 38 H 1.08008 * 120.78691 * 180.26734 * 23 22 21 39 39 H 1.08002 * 120.42244 * 179.78749 * 24 23 22 40 40 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0759 0.0018 13 1 3.3176 -5.8285 0.5918 14 6 2.8485 -6.3883 -1.4133 15 6 1.9176 -6.3308 -2.4340 16 6 2.2970 -6.6125 -3.7329 17 6 3.6052 -6.9622 -4.0107 18 6 4.5359 -7.0251 -2.9892 19 17 6.1791 -7.4635 -3.3374 20 6 4.1567 -6.7378 -1.6898 21 6 1.7502 -7.2768 0.6017 22 6 2.2170 -7.8067 1.7900 23 6 1.5758 -8.9076 2.3365 24 6 0.4910 -9.4433 1.6590 25 6 0.0814 -8.8598 0.4752 26 7 0.7122 -7.8093 -0.0127 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8921 31 1 2.8725 -3.6048 -0.8878 32 1 0.8752 -4.9845 -0.7808 33 1 0.8945 -6.0616 -2.2168 34 1 1.5703 -6.5634 -4.5304 35 1 3.9006 -7.1866 -5.0250 36 1 4.8826 -6.7874 -0.8918 37 1 3.0676 -7.3660 2.2885 38 1 1.9157 -9.3403 3.2660 39 1 -0.0302 -10.3029 2.0538 40 1 -0.7651 -9.2685 -0.0564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133785888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:51 Heat of formation + Delta-G solvation = 47.516146 kcal Electronic energy + Delta-G solvation = -22974.681869 eV Core-core repulsion = 19586.584242 eV Total energy + Delta-G solvation = -3388.097628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49729 -39.26370 -36.81708 -35.95911 -33.45745 -32.40191 -31.84963 -30.88724 -30.52765 -28.79044 -25.90604 -23.94272 -23.41363 -22.77465 -22.55043 -20.62495 -20.50586 -17.36061 -16.94580 -16.44085 -16.09702 -15.64392 -15.47054 -15.33724 -14.80239 -14.42764 -14.11597 -13.87603 -13.70547 -13.37981 -13.26699 -13.12824 -12.83409 -12.23532 -12.14853 -11.82375 -11.60222 -11.42801 -11.25541 -11.12593 -10.92834 -10.89142 -10.54120 -10.08608 -9.87972 -9.53483 -9.40176 -9.18663 -8.95896 -8.89413 -8.66009 -8.35467 -7.95022 -5.99321 -4.01785 1.04096 1.19173 1.27235 1.30349 2.06132 3.31807 3.39276 3.43270 3.59749 3.78219 4.31968 4.41319 4.50523 4.73692 4.78833 4.81020 4.99328 5.04046 5.05166 5.17206 5.30446 5.33136 5.37018 5.41548 5.55618 5.69615 5.74070 5.83065 6.10407 6.14223 6.14992 6.28090 6.33515 6.38204 6.49744 6.66890 6.78787 6.94809 7.37866 7.71006 7.77560 7.90665 8.04650 8.07475 8.42910 9.05441 9.62088 11.12122 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004055 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.218710 B = 6902.934324 C = 9000.930260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.672 5.672 12 C 0.174 3.826 13 H 0.099 0.901 14 C -0.088 4.088 15 C -0.083 4.083 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.036 4.036 19 Cl -0.080 7.080 20 C -0.104 4.104 21 C 0.159 3.841 22 C -0.162 4.162 23 C -0.075 4.075 24 C -0.182 4.182 25 C 0.101 3.899 26 N -0.468 5.468 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.345 0.655 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -21.294 -2.229 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.304 5.304 12 C 0.062 3.938 13 H 0.117 0.883 14 C -0.091 4.091 15 C -0.101 4.101 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.063 4.063 19 Cl -0.051 7.051 20 C -0.123 4.123 21 C 0.021 3.979 22 C -0.183 4.183 23 C -0.101 4.101 24 C -0.203 4.203 25 C -0.057 4.057 26 N -0.177 5.177 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.992 -20.814 -2.347 21.533 hybrid contribution 1.153 0.516 -0.096 1.267 sum 6.145 -20.299 -2.444 21.349 Atomic orbital electron populations 1.69983 1.06024 1.26467 1.50729 1.24991 0.94819 0.99188 0.95300 0.86548 0.80114 0.83835 0.77574 1.19747 1.21033 1.20998 1.21191 0.93008 0.90904 1.50760 0.92680 1.19059 0.93973 0.90323 0.97767 1.22253 0.97163 0.87960 0.98933 1.60762 1.18297 1.00989 1.50320 1.19442 0.94873 0.88899 0.90541 0.88310 1.20519 0.92869 0.98786 0.96897 1.21109 0.99990 0.97042 0.92006 1.21097 0.95367 0.99067 0.96979 1.21015 0.92869 1.00935 0.98479 1.20833 0.85728 1.04743 0.94960 1.98355 1.19836 1.91555 1.95357 1.20911 0.96300 1.00052 0.95028 1.20979 0.91535 0.94154 0.91276 1.21924 1.01928 0.97542 0.96863 1.21517 0.94610 0.94915 0.99105 1.22086 0.98699 1.02014 0.97452 1.22720 0.97987 0.91626 0.93342 1.67411 1.06942 1.09616 1.33715 0.93057 0.96759 0.95640 0.92154 0.96164 0.83384 0.84737 0.85051 0.85275 0.85219 0.84886 0.85061 0.85180 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.69 9.11 -34.43 -0.31 -15.01 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.06 1.33 5.42 -3.82 -0.02 1.31 16 11 N -0.67 -11.89 6.22 -109.19 -0.68 -12.57 16 12 C 0.17 2.54 2.55 -70.01 -0.18 2.36 16 13 H 0.10 1.35 7.39 -51.93 -0.38 0.97 16 14 C -0.09 -1.23 4.62 -104.63 -0.48 -1.72 16 15 C -0.08 -1.14 8.56 -39.58 -0.34 -1.47 16 16 C -0.11 -1.29 10.04 -39.59 -0.40 -1.68 16 17 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 18 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 19 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 20 C -0.10 -1.36 9.45 -39.55 -0.37 -1.73 16 21 C 0.16 2.20 5.75 -82.58 -0.48 1.72 16 22 C -0.16 -1.90 9.71 -39.44 -0.38 -2.29 16 23 C -0.08 -0.75 10.18 -39.28 -0.40 -1.15 16 24 C -0.18 -1.76 10.11 -39.44 -0.40 -2.16 16 25 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 26 N -0.47 -6.48 9.55 -9.47 -0.09 -6.57 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 31 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 32 H 0.35 6.13 6.36 -39.29 -0.25 5.88 16 33 H 0.13 1.87 6.53 -52.49 -0.34 1.53 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.51 8.04 -52.49 -0.42 1.09 16 37 H 0.13 1.32 7.95 -52.49 -0.42 0.90 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -31.59 357.35 -11.16 -42.75 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.15 Total: 4.13 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -4.84 Total: -21.21 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.03 Total: -45.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.59 -11.16 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133785888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.263 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds