Wall clock time and date at job start Tue Mar 31 2020 10:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48505 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47183 * 299.99447 * 3 2 1 6 6 H 1.48496 * 109.47442 * 59.99771 * 3 2 1 7 7 C 1.37881 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46580 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99981 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47158 * 34.99707 * 12 11 10 14 14 C 1.50699 * 109.46960 * 274.99581 * 12 11 10 15 15 C 1.38266 * 119.99684 * 319.72414 * 14 12 11 16 16 C 1.38216 * 120.02788 * 179.76610 * 15 14 12 17 17 C 1.38233 * 120.01344 * 0.51277 * 16 15 14 18 18 C 1.38332 * 119.98837 * 359.74339 * 17 16 15 19 19 Cl 1.73599 * 120.01645 * 180.02562 * 18 17 16 20 20 C 1.38200 * 119.99311 * 140.00132 * 14 12 11 21 21 C 1.50706 * 109.47189 * 154.99903 * 12 11 10 22 22 C 1.38227 * 119.61686 * 245.02517 * 21 12 11 23 23 C 1.38627 * 119.15663 * 179.70253 * 22 21 12 24 24 C 1.38669 * 118.42388 * 0.51169 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.50231 * 24 23 22 26 26 N 1.31856 * 119.61480 * 64.99435 * 21 12 11 27 27 H 0.96997 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47176 * 59.99996 * 9 7 2 29 29 H 1.09002 * 109.46687 * 299.99544 * 9 7 2 30 30 H 1.08991 * 109.47914 * 59.99904 * 10 9 7 31 31 H 1.09002 * 109.47189 * 299.99176 * 10 9 7 32 32 H 1.00896 * 111.00012 * 56.04239 * 11 10 9 33 33 H 1.07997 * 119.98154 * 0.02562 * 15 14 12 34 34 H 1.08003 * 119.99406 * 180.25904 * 16 15 14 35 35 H 1.07998 * 120.00925 * 179.72758 * 17 16 15 36 36 H 1.07999 * 120.00362 * 0.02562 * 20 14 12 37 37 H 1.07997 * 120.41943 * 359.97438 * 22 21 12 38 38 H 1.08008 * 120.78691 * 180.26734 * 23 22 21 39 39 H 1.08002 * 120.42244 * 179.78749 * 24 23 22 40 40 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0759 0.0018 13 1 3.3176 -5.8285 0.5918 14 6 2.8485 -6.3883 -1.4133 15 6 1.9176 -6.3308 -2.4340 16 6 2.2970 -6.6125 -3.7329 17 6 3.6052 -6.9622 -4.0107 18 6 4.5359 -7.0251 -2.9892 19 17 6.1791 -7.4635 -3.3374 20 6 4.1567 -6.7378 -1.6898 21 6 1.7502 -7.2768 0.6017 22 6 2.2170 -7.8067 1.7900 23 6 1.5758 -8.9076 2.3365 24 6 0.4910 -9.4433 1.6590 25 6 0.0814 -8.8598 0.4752 26 7 0.7122 -7.8093 -0.0127 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8921 31 1 2.8725 -3.6048 -0.8878 32 1 0.8752 -4.9845 -0.7808 33 1 0.8945 -6.0616 -2.2168 34 1 1.5703 -6.5634 -4.5304 35 1 3.9006 -7.1866 -5.0250 36 1 4.8826 -6.7874 -0.8918 37 1 3.0676 -7.3660 2.2885 38 1 1.9157 -9.3403 3.2660 39 1 -0.0302 -10.3029 2.0538 40 1 -0.7651 -9.2685 -0.0564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133785888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:50 Heat of formation + Delta-G solvation = 29.893008 kcal Electronic energy + Delta-G solvation = -22975.446066 eV Core-core repulsion = 19586.584242 eV Total energy + Delta-G solvation = -3388.861824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44323 -40.20359 -37.92400 -37.14605 -35.32064 -33.50554 -33.14786 -31.84370 -31.54305 -30.43982 -27.27910 -25.54656 -24.42419 -23.74171 -23.53390 -22.36989 -21.61024 -18.54571 -18.35467 -17.83461 -17.11471 -16.71786 -16.52620 -16.39125 -16.28956 -15.94693 -15.33251 -15.04413 -14.72030 -14.55097 -14.45339 -14.21577 -14.03906 -13.77174 -13.43244 -13.09942 -12.88845 -12.72014 -12.58687 -12.49268 -12.34838 -12.21670 -12.02496 -11.82048 -11.44396 -11.28655 -10.71046 -10.57154 -10.34230 -9.95856 -9.84096 -9.64969 -9.37452 -8.19602 -6.30799 0.10960 0.21663 0.34396 0.48016 1.10191 1.40879 1.41004 1.54407 2.40811 2.61078 2.85746 3.14183 3.32625 3.47291 3.63252 3.84591 3.97437 4.09400 4.11178 4.23369 4.27120 4.34185 4.41043 4.45334 4.55579 4.59318 4.72439 4.77756 4.88482 4.91370 5.05934 5.17902 5.29409 5.32230 5.34167 5.42270 5.50273 5.67161 5.78189 5.79049 5.87889 6.10194 6.22872 6.43280 6.86172 7.17525 7.38476 8.92817 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004055 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.218710 B = 6902.934324 C = 9000.930260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.087 3.913 11 N -0.677 5.677 12 C 0.177 3.823 13 H 0.104 0.896 14 C -0.098 4.098 15 C -0.099 4.099 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.044 4.044 19 Cl -0.070 7.070 20 C -0.112 4.112 21 C 0.133 3.867 22 C -0.173 4.173 23 C -0.077 4.077 24 C -0.174 4.174 25 C 0.082 3.918 26 N -0.495 5.495 27 H 0.263 0.737 28 H -0.011 1.011 29 H -0.006 1.006 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.342 0.658 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -22.387 -2.048 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.041 4.041 11 N -0.308 5.308 12 C 0.067 3.933 13 H 0.122 0.878 14 C -0.100 4.100 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.133 4.133 18 C -0.070 4.070 19 Cl -0.041 7.041 20 C -0.131 4.131 21 C -0.005 4.005 22 C -0.193 4.193 23 C -0.102 4.102 24 C -0.193 4.193 25 C -0.075 4.075 26 N -0.205 5.205 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.294 -21.930 -2.165 22.918 hybrid contribution 0.700 0.731 -0.149 1.023 sum 6.994 -21.200 -2.314 22.443 Atomic orbital electron populations 1.70117 1.07822 1.27685 1.51556 1.25947 0.95714 1.03278 0.94650 0.85399 0.79101 0.78766 0.77779 1.18535 1.20402 1.20335 1.21609 0.93509 0.92095 1.50698 0.92105 1.18891 0.94236 0.92263 0.94949 1.21817 0.95610 0.87785 0.98933 1.60665 1.18893 1.00898 1.50387 1.19425 0.94419 0.88106 0.91386 0.87811 1.20468 0.93409 0.99621 0.96507 1.21156 0.99620 0.98026 0.92966 1.21365 0.96131 0.98248 0.96842 1.21304 0.92504 1.00061 0.99421 1.20977 0.86422 1.04608 0.95011 1.98355 1.19055 1.91439 1.95266 1.21040 0.96117 1.00175 0.95785 1.20891 0.92536 0.94598 0.92512 1.22165 1.02584 0.98297 0.96268 1.21938 0.94208 0.94064 1.00024 1.22475 0.98196 1.02278 0.96390 1.23192 0.98551 0.91313 0.94450 1.67333 1.07508 1.10872 1.34765 0.92783 0.99267 0.98766 0.91743 0.96356 0.83755 0.85818 0.82877 0.83046 0.84188 0.83608 0.81914 0.81882 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.84 5.23 29.85 0.16 2.00 16 10 C 0.09 3.70 5.42 86.30 0.47 4.17 16 11 N -0.68 -24.90 6.22 -499.36 -3.10 -28.00 16 12 C 0.18 5.27 2.55 43.42 0.11 5.38 16 13 H 0.10 2.87 7.39 -2.39 -0.02 2.85 16 14 C -0.10 -2.77 4.62 -19.87 -0.09 -2.86 16 15 C -0.10 -2.77 8.56 22.27 0.19 -2.58 16 16 C -0.11 -2.53 10.04 22.26 0.22 -2.31 16 17 C -0.11 -2.55 9.83 22.29 0.22 -2.33 16 18 C -0.04 -1.06 6.32 22.32 0.14 -0.92 16 19 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.59 16 20 C -0.11 -2.89 9.45 22.29 0.21 -2.68 16 21 C 0.13 3.67 5.75 42.55 0.24 3.91 16 22 C -0.17 -3.88 9.71 22.36 0.22 -3.67 16 23 C -0.08 -1.34 10.18 22.47 0.23 -1.11 16 24 C -0.17 -2.93 10.11 22.36 0.23 -2.70 16 25 C 0.08 1.77 11.18 84.67 0.95 2.71 16 26 N -0.50 -13.79 9.55 -183.88 -1.76 -15.55 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.06 2.66 8.06 -2.39 -0.02 2.64 16 31 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 32 H 0.34 12.86 6.36 -89.70 -0.57 12.29 16 33 H 0.12 3.65 6.53 -2.91 -0.02 3.63 16 34 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 3.18 8.04 -2.91 -0.02 3.15 16 37 H 0.15 2.73 7.95 -2.91 -0.02 2.70 16 38 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.18 357.35 2.04 -67.15 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.48 Total: 21.72 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 4.19 Total: -33.26 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.58 Total: -100.65 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.59 kcal Total: -69.18 2.04 -67.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133785888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.039 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds