Wall clock time and date at job start Tue Mar 31 2020 11:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47104 * 2 1 4 4 C 1.50697 * 109.46788 * 120.00311 * 2 1 3 5 5 H 1.08000 * 120.00476 * 120.00426 * 4 2 1 6 6 C 1.37881 * 120.00135 * 299.99638 * 4 2 1 7 7 N 1.31511 * 119.99676 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00236 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46847 * 90.00301 * 8 6 4 10 10 H 1.48495 * 109.47399 * 210.00277 * 8 6 4 11 11 H 1.48500 * 109.47469 * 330.00695 * 8 6 4 12 12 N 1.46504 * 109.47116 * 240.00166 * 2 1 3 13 13 C 1.46496 * 119.99635 * 300.00030 * 12 2 1 14 14 S 1.65600 * 119.99928 * 120.00070 * 12 2 1 15 15 O 1.42097 * 106.39860 * 156.45461 * 14 12 2 16 16 O 1.42102 * 106.40043 * 23.54283 * 14 12 2 17 17 N 1.65599 * 107.21735 * 269.99996 * 14 12 2 18 18 C 1.46499 * 120.00012 * 65.00259 * 17 14 12 19 19 C 1.50701 * 109.46992 * 164.99696 * 18 17 14 20 20 C 1.38244 * 119.97486 * 269.72684 * 19 18 17 21 21 C 1.38202 * 120.02338 * 179.72838 * 20 19 18 22 22 C 1.38457 * 119.97200 * 0.56577 * 21 20 19 23 23 F 1.35099 * 120.02649 * 179.68648 * 22 21 20 24 24 C 1.38455 * 119.95159 * 359.70550 * 22 21 20 25 25 C 1.38200 * 119.97412 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47346 * 299.99834 * 1 2 3 27 27 H 1.09006 * 109.46868 * 59.99726 * 1 2 3 28 28 H 1.09002 * 109.47660 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00196 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47088 * 269.99703 * 13 12 2 31 31 H 1.08996 * 109.47486 * 30.00375 * 13 12 2 32 32 H 1.09003 * 109.46546 * 150.00318 * 13 12 2 33 33 H 0.97001 * 119.99797 * 244.99459 * 17 14 12 34 34 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 35 35 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 36 36 H 1.07996 * 119.98449 * 359.97438 * 20 19 18 37 37 H 1.07995 * 120.01101 * 180.25281 * 21 20 19 38 38 H 1.08001 * 120.01453 * 179.97438 * 24 22 21 39 39 H 1.08008 * 119.98737 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3223 -1.1197 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9492 5.1122 11 1 2.4879 -2.5655 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 3.7119 -0.8788 -2.9813 16 8 3.5795 1.1829 -1.5747 17 7 1.9607 0.8091 -3.3998 18 6 1.0292 1.8619 -2.9874 19 6 0.5028 2.5730 -4.2074 20 6 1.1660 3.6809 -4.7011 21 6 0.6873 4.3304 -5.8231 22 6 -0.4635 3.8779 -6.4460 23 9 -0.9360 4.5158 -7.5392 24 6 -1.1301 2.7715 -5.9474 25 6 -0.6464 2.1204 -4.8285 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7087 1.1612 3.4844 30 1 2.4157 -2.7377 -0.9717 31 1 0.6904 -2.3001 -0.9847 32 1 1.6238 -2.2851 -2.5002 33 1 1.9862 0.5191 -4.3250 34 1 1.5475 2.5752 -2.3466 35 1 0.1985 1.4177 -2.4390 36 1 2.0607 4.0367 -4.2120 37 1 1.2078 5.1935 -6.2110 38 1 -2.0281 2.4180 -6.4321 39 1 -1.1664 1.2575 -4.4391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282988366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:22 Heat of formation + Delta-G solvation = -116.945692 kcal Electronic energy + Delta-G solvation = -24631.963607 eV Core-core repulsion = 20808.008860 eV Total energy + Delta-G solvation = -3823.954747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.90874 -40.22780 -38.33003 -37.85570 -36.86709 -36.21229 -34.49368 -32.10453 -31.57687 -30.86899 -27.25575 -26.98135 -26.49523 -24.01754 -22.57669 -22.49499 -20.31660 -18.96409 -18.67543 -18.50498 -18.08775 -17.52266 -17.36836 -16.74629 -16.59072 -16.28258 -15.72104 -15.29720 -14.95441 -14.86453 -14.76232 -14.47744 -14.43884 -13.83892 -13.77608 -13.59731 -13.34223 -13.20184 -13.09929 -12.98772 -12.95384 -12.76754 -12.56267 -12.36943 -12.18226 -12.09618 -11.96436 -11.85042 -11.09432 -10.55855 -10.43750 -10.06891 -9.73452 -9.58211 -8.09212 -6.21571 -0.39205 0.13764 0.27438 1.43463 1.46191 1.54315 2.06915 2.44918 2.55964 2.74288 3.19476 3.26623 3.42567 3.66710 3.75913 3.98348 4.10141 4.20020 4.30591 4.45227 4.60412 4.73080 4.78884 4.88833 4.98329 5.00792 5.08374 5.14195 5.14887 5.18880 5.22769 5.25125 5.54501 5.65699 5.75101 5.89722 5.92492 6.12173 6.21648 6.35604 6.85622 7.47119 8.94471 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.003546 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.678397 B = 7894.262072 C = 8447.571140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.030 0.970 4 C -0.539 4.539 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.269 1.269 12 N -0.997 5.997 13 C 0.104 3.896 14 S 2.796 3.204 15 O -1.011 7.011 16 O -1.014 7.014 17 N -1.110 6.110 18 C 0.156 3.844 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.157 4.157 22 C 0.086 3.914 23 F -0.147 7.147 24 C -0.154 4.154 25 C -0.071 4.071 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.424 0.576 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 2.804 -16.422 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.193 1.193 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.805 3.195 15 O -0.995 6.995 16 O -0.998 6.998 17 N -0.873 5.873 18 C 0.031 3.969 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.176 4.176 22 C 0.066 3.934 23 F -0.126 7.126 24 C -0.172 4.172 25 C -0.089 4.089 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.260 0.740 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.275 3.041 -16.111 17.223 hybrid contribution 0.053 -0.244 0.531 0.587 sum -5.222 2.797 -15.580 16.668 Atomic orbital electron populations 1.21981 0.96554 1.00360 1.00870 1.18444 0.92442 0.91427 0.80985 0.95251 1.21667 1.31573 1.13006 0.91666 0.92844 1.25556 0.95259 0.95731 1.01396 1.69950 1.37158 1.23552 1.24267 0.85682 0.77947 0.79194 0.79547 1.21011 1.20443 1.19337 1.57572 1.70035 1.21068 1.35181 1.21326 1.01640 0.80263 1.00899 1.01229 0.73453 0.72444 0.72334 1.93523 1.70395 1.60629 1.74915 1.93547 1.75182 1.57314 1.73732 1.55763 1.56666 1.50965 1.23900 1.20266 0.93061 0.89042 0.94561 1.19879 0.96777 0.96939 0.97490 1.21186 0.99615 0.94257 0.94855 1.21318 0.96357 1.02616 0.97266 1.18005 0.95437 0.94138 0.85782 1.91484 1.88108 1.81165 1.51854 1.21373 1.02084 0.95508 0.98261 1.21206 0.94559 0.99473 0.93687 0.91504 0.93654 0.93941 0.92674 0.94349 0.90213 0.90121 0.74044 0.90700 0.89493 0.84110 0.83153 0.82653 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.95 71.98 0.64 -5.05 16 2 C 0.27 12.59 2.62 44.24 0.12 12.70 16 3 H 0.03 1.55 6.91 -2.39 -0.02 1.53 16 4 C -0.54 -28.47 8.37 25.60 0.21 -28.26 16 5 H 0.05 2.84 7.65 -2.91 -0.02 2.82 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -49.51 11.32 21.45 0.24 -49.27 16 8 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 N -1.00 -38.57 3.12 -520.45 -1.62 -40.19 16 13 C 0.10 3.40 9.53 127.77 1.22 4.62 16 14 S 2.80 102.74 6.09 -56.49 -0.34 102.40 16 15 O -1.01 -39.62 17.21 -128.00 -2.20 -41.83 16 16 O -1.01 -45.98 16.17 -128.00 -2.07 -48.05 16 17 N -1.11 -28.77 6.05 -190.79 -1.15 -29.93 16 18 C 0.16 3.83 6.37 85.63 0.55 4.38 16 19 C -0.11 -2.18 5.28 -19.86 -0.10 -2.29 16 20 C -0.08 -1.55 9.70 22.26 0.22 -1.33 16 21 C -0.16 -2.79 10.03 22.31 0.22 -2.57 16 22 C 0.09 1.60 7.30 22.37 0.16 1.76 16 23 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 24 C -0.15 -2.47 10.03 22.31 0.22 -2.25 16 25 C -0.07 -1.17 9.70 22.26 0.22 -0.96 16 26 H 0.07 3.16 6.07 -2.39 -0.01 3.14 16 27 H 0.04 1.51 6.18 -2.38 -0.01 1.50 16 28 H 0.04 1.64 6.66 -2.39 -0.02 1.63 16 29 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.08 2.46 6.43 -2.39 -0.02 2.44 16 32 H 0.08 2.09 7.79 -2.39 -0.02 2.07 16 33 H 0.42 8.75 8.64 -96.75 -0.84 7.92 16 34 H 0.07 2.09 7.69 -2.39 -0.02 2.08 16 35 H 0.09 2.06 6.12 -2.39 -0.01 2.04 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.89 340.09 0.02 -66.87 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.25 Total: 15.24 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.12 Total: -17.70 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -2.54 Total: -119.38 kcal Atomic # 8 Polarization: -85.61 SS G_CDS: -4.27 Total: -89.88 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 102.74 SS G_CDS: -0.34 Total: 102.40 kcal Total: -66.89 0.02 -66.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282988366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.077 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds