Wall clock time and date at job start Tue Mar 31 2020 11:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 119.97478 * 2 1 4 4 C 1.38179 * 120.02401 * 179.97438 * 3 2 1 5 5 C 1.38485 * 119.97432 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02079 * 180.02562 * 5 4 3 7 7 C 1.38433 * 119.94678 * 359.71033 * 5 4 3 8 8 C 1.38219 * 119.97746 * 0.54466 * 7 5 4 9 9 C 1.50695 * 119.98721 * 179.75309 * 8 7 5 10 10 N 1.46492 * 109.47496 * 97.21553 * 9 8 7 11 11 C 1.36939 * 120.00540 * 87.21716 * 10 9 8 12 12 H 1.07993 * 120.00295 * 224.33285 * 11 10 9 13 13 C 1.38816 * 119.99647 * 44.32958 * 11 10 9 14 14 N 1.31614 * 119.99977 * 207.72161 * 13 11 10 15 15 Si 1.86803 * 119.99952 * 27.72242 * 13 11 10 16 16 H 1.48503 * 109.47113 * 87.64746 * 15 13 11 17 17 H 1.48501 * 109.47251 * 207.64595 * 15 13 11 18 18 H 1.48504 * 109.47136 * 327.64557 * 15 13 11 19 19 S 1.65603 * 119.99757 * 266.94247 * 10 9 8 20 20 O 1.42102 * 106.40143 * 27.66276 * 19 10 9 21 21 O 1.42101 * 106.40357 * 160.57938 * 19 10 9 22 22 N 1.65599 * 107.22099 * 274.11795 * 19 10 9 23 23 C 1.46507 * 119.99823 * 93.93327 * 22 19 10 24 24 C 1.46501 * 120.00419 * 273.94041 * 22 19 10 25 25 H 1.09008 * 109.46949 * 271.12872 * 1 2 3 26 26 H 1.08995 * 109.46787 * 31.12836 * 1 2 3 27 27 H 1.08994 * 109.47196 * 151.13226 * 1 2 3 28 28 H 1.07995 * 119.99080 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.01137 * 180.02562 * 4 3 2 30 30 H 1.08002 * 120.01194 * 180.29260 * 7 5 4 31 31 H 1.09001 * 109.47439 * 337.21108 * 9 8 7 32 32 H 1.09009 * 109.46919 * 217.21644 * 9 8 7 33 33 H 0.97000 * 120.00418 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46856 * 90.00344 * 23 22 19 35 35 H 1.08993 * 109.47083 * 210.00355 * 23 22 19 36 36 H 1.09003 * 109.47098 * 330.00689 * 23 22 19 37 37 H 1.08998 * 109.47018 * 64.44935 * 24 22 19 38 38 H 1.08992 * 109.46922 * 184.44948 * 24 22 19 39 39 H 1.09002 * 109.46578 * 304.45319 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 0.0000 0.0016 7 6 3.5797 -1.1986 0.0061 8 6 2.1975 -1.1974 0.0002 9 6 1.4432 -2.5020 0.0006 10 7 1.0427 -2.8342 1.3700 11 6 -0.1361 -2.3534 1.8745 12 1 -0.1688 -1.9433 2.8729 13 6 -1.2889 -2.3932 1.1023 14 7 -2.2415 -1.5059 1.2958 15 14 -1.4883 -3.7061 -0.2115 16 1 -2.0886 -4.9230 0.3919 17 1 -2.3759 -3.1982 -1.2883 18 1 -0.1589 -4.0408 -0.7826 19 16 2.0124 -3.7967 2.3058 20 8 3.3400 -3.6061 1.8363 21 8 1.6243 -3.5679 3.6534 22 7 1.6173 -5.3686 1.9659 23 6 2.3712 -6.1106 0.9523 24 6 0.5139 -6.0172 2.6786 25 1 -0.3633 0.0202 1.0275 26 1 -0.3633 0.8797 -0.5312 27 1 -0.3633 -0.8999 -0.4961 28 1 1.6573 2.1327 -0.0004 29 1 4.1190 2.1346 0.0010 30 1 4.1191 -2.1343 0.0108 31 1 2.0832 -3.2919 -0.3926 32 1 0.5554 -2.4085 -0.6251 33 1 -3.0473 -1.5338 0.7565 34 1 3.2141 -6.6159 1.4239 35 1 1.7207 -6.8492 0.4840 36 1 2.7399 -5.4188 0.1949 37 1 -0.4221 -5.5157 2.4326 38 1 0.4545 -7.0639 2.3808 39 1 0.6884 -5.9542 3.7527 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283594813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:28 Heat of formation + Delta-G solvation = -76.112485 kcal Electronic energy + Delta-G solvation = -26316.209173 eV Core-core repulsion = 22494.025087 eV Total energy + Delta-G solvation = -3822.184086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.40643 -39.07958 -36.14831 -35.88110 -35.37477 -34.67371 -32.49929 -31.67154 -30.76727 -27.61027 -26.64385 -25.37311 -24.16507 -23.78838 -21.82963 -20.53584 -18.52618 -17.50808 -17.28251 -16.51837 -16.21802 -15.94547 -15.59681 -15.13581 -15.02568 -14.84218 -14.03669 -13.69284 -13.64426 -13.37206 -13.22274 -12.98674 -12.83141 -12.53599 -12.41465 -12.22156 -11.99584 -11.67582 -11.41457 -11.33337 -11.04205 -10.99679 -10.87467 -10.87085 -10.73601 -10.66077 -10.46703 -10.36732 -10.11904 -8.94508 -8.50642 -8.40440 -8.16862 -7.84543 -6.72385 -4.22352 1.48919 1.73506 1.81869 2.96127 3.07210 3.13301 3.80561 3.97059 4.09450 4.53961 4.65696 4.73888 5.15627 5.27703 5.30683 5.32921 5.52684 5.61748 5.71520 5.75270 5.80873 5.86745 6.01869 6.08274 6.16550 6.25608 6.28870 6.41206 6.50848 6.54001 6.62392 6.69858 6.77657 6.86964 7.18909 7.27806 7.30124 7.41587 7.54119 8.24257 8.87052 8.95237 10.34358 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.007913 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.773002 B = 3537.549582 C = 4871.416363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.053 4.053 3 C -0.110 4.110 4 C -0.153 4.153 5 C 0.069 3.931 6 F -0.150 7.150 7 C -0.125 4.125 8 C -0.072 4.072 9 C 0.165 3.835 10 N -0.842 5.842 11 C -0.282 4.282 12 H 0.112 0.888 13 C 0.082 3.918 14 N -0.824 5.824 15 Si 0.847 3.153 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.251 1.251 19 S 2.686 3.314 20 O -1.010 7.010 21 O -0.985 6.985 22 N -1.027 6.027 23 C 0.101 3.899 24 C 0.097 3.903 25 H 0.112 0.888 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.279 0.721 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -1.946 -5.774 6.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.054 4.054 3 C -0.128 4.128 4 C -0.172 4.172 5 C 0.050 3.950 6 F -0.129 7.129 7 C -0.145 4.145 8 C -0.074 4.074 9 C 0.039 3.961 10 N -0.671 5.671 11 C -0.424 4.424 12 H 0.130 0.870 13 C -0.133 4.133 14 N -0.459 5.459 15 Si 0.671 3.329 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.175 1.175 19 S 2.709 3.291 20 O -0.994 6.994 21 O -0.969 6.969 22 N -0.863 5.863 23 C -0.046 4.046 24 C -0.049 4.049 25 H 0.131 0.869 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.948 -1.779 -5.125 6.710 hybrid contribution -0.263 -0.962 -0.872 1.325 sum 3.686 -2.741 -5.997 7.554 Atomic orbital electron populations 1.21129 0.88898 1.00781 1.05535 1.20102 0.97644 0.91755 0.95919 1.20825 0.92772 0.98010 1.01183 1.20995 0.95051 0.96476 1.04723 1.17626 0.76481 0.94750 1.06127 1.91436 1.29516 1.97487 1.94418 1.21226 0.94529 0.97480 1.01239 1.20048 0.92304 0.96180 0.98896 1.20413 0.97676 0.92109 0.85946 1.53716 1.35290 1.54610 1.23483 1.18939 0.83728 1.35959 1.03797 0.87035 1.25657 0.95081 0.95269 0.97267 1.69906 1.07959 1.29502 1.38525 0.87516 0.79515 0.83920 0.81946 1.19693 1.20553 1.17530 1.07407 0.74385 0.71977 0.75331 1.93417 1.38410 1.85317 1.82273 1.93441 1.83787 1.84315 1.35360 1.58739 1.44083 1.32682 1.50754 1.21290 0.95286 0.96876 0.91105 1.21361 0.89430 0.97545 0.96540 0.86940 0.93842 0.91504 0.85549 0.85659 0.84084 0.91498 0.89953 0.91060 0.93828 0.92355 0.91818 0.92384 0.92072 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 7.52 36.01 0.27 -1.73 16 2 C -0.05 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.11 -1.78 9.70 -39.59 -0.38 -2.17 16 4 C -0.15 -2.46 10.03 -39.51 -0.40 -2.86 16 5 C 0.07 1.25 7.30 -39.42 -0.29 0.96 16 6 F -0.15 -2.68 17.27 2.25 0.04 -2.64 16 7 C -0.13 -2.39 9.00 -39.52 -0.36 -2.75 16 8 C -0.07 -1.39 5.45 -104.64 -0.57 -1.96 16 9 C 0.16 3.24 3.44 -5.20 -0.02 3.22 16 10 N -0.84 -18.35 2.34 -61.09 -0.14 -18.50 16 11 C -0.28 -6.63 7.51 -15.06 -0.11 -6.75 16 12 H 0.11 2.98 7.79 -52.49 -0.41 2.57 16 13 C 0.08 1.85 2.97 -17.43 -0.05 1.79 16 14 N -0.82 -19.16 12.68 55.49 0.70 -18.45 16 15 Si 0.85 17.12 26.08 -169.99 -4.43 12.68 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.25 -4.74 5.49 56.52 0.31 -4.43 16 19 S 2.69 59.47 5.96 -107.50 -0.64 58.83 16 20 O -1.01 -22.95 14.70 -57.17 -0.84 -23.79 16 21 O -0.98 -24.99 16.24 -57.17 -0.93 -25.92 16 22 N -1.03 -19.02 3.64 -129.20 -0.47 -19.49 16 23 C 0.10 1.52 10.26 59.85 0.61 2.14 16 24 C 0.10 1.63 10.41 59.85 0.62 2.26 16 25 H 0.11 2.40 6.10 -51.92 -0.32 2.09 16 26 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.07 1.29 4.15 -51.93 -0.22 1.08 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.14 2.71 7.19 -52.49 -0.38 2.33 16 31 H 0.07 1.19 7.31 -51.93 -0.38 0.81 16 32 H 0.08 1.58 2.93 -51.92 -0.15 1.43 16 33 H 0.28 6.09 8.31 -40.82 -0.34 5.75 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 36 H 0.06 0.95 7.32 -51.93 -0.38 0.57 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.82 7.83 -51.93 -0.41 0.41 16 39 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -27.22 323.32 -7.92 -35.14 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.80 Total: 6.70 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.28 Total: -9.44 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.09 Total: -56.44 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.77 Total: -49.71 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -4.43 Total: 12.68 kcal Atomic # 16 Polarization: 59.47 SS G_CDS: -0.64 Total: 58.83 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.22 -7.92 -35.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283594813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.972 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds