Wall clock time and date at job start Tue Mar 31 2020 11:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 119.97478 * 2 1 4 4 C 1.38179 * 120.02401 * 179.97438 * 3 2 1 5 5 C 1.38485 * 119.97432 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02079 * 180.02562 * 5 4 3 7 7 C 1.38433 * 119.94678 * 359.71033 * 5 4 3 8 8 C 1.38219 * 119.97746 * 0.54466 * 7 5 4 9 9 C 1.50695 * 119.98721 * 179.75309 * 8 7 5 10 10 N 1.46492 * 109.47496 * 97.21553 * 9 8 7 11 11 C 1.36939 * 120.00540 * 87.21716 * 10 9 8 12 12 H 1.07993 * 120.00295 * 224.33285 * 11 10 9 13 13 C 1.38816 * 119.99647 * 44.32958 * 11 10 9 14 14 N 1.31614 * 119.99977 * 207.72161 * 13 11 10 15 15 Si 1.86803 * 119.99952 * 27.72242 * 13 11 10 16 16 H 1.48503 * 109.47113 * 87.64746 * 15 13 11 17 17 H 1.48501 * 109.47251 * 207.64595 * 15 13 11 18 18 H 1.48504 * 109.47136 * 327.64557 * 15 13 11 19 19 S 1.65603 * 119.99757 * 266.94247 * 10 9 8 20 20 O 1.42102 * 106.40143 * 27.66276 * 19 10 9 21 21 O 1.42101 * 106.40357 * 160.57938 * 19 10 9 22 22 N 1.65599 * 107.22099 * 274.11795 * 19 10 9 23 23 C 1.46507 * 119.99823 * 93.93327 * 22 19 10 24 24 C 1.46501 * 120.00419 * 273.94041 * 22 19 10 25 25 H 1.09008 * 109.46949 * 271.12872 * 1 2 3 26 26 H 1.08995 * 109.46787 * 31.12836 * 1 2 3 27 27 H 1.08994 * 109.47196 * 151.13226 * 1 2 3 28 28 H 1.07995 * 119.99080 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.01137 * 180.02562 * 4 3 2 30 30 H 1.08002 * 120.01194 * 180.29260 * 7 5 4 31 31 H 1.09001 * 109.47439 * 337.21108 * 9 8 7 32 32 H 1.09009 * 109.46919 * 217.21644 * 9 8 7 33 33 H 0.97000 * 120.00418 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46856 * 90.00344 * 23 22 19 35 35 H 1.08993 * 109.47083 * 210.00355 * 23 22 19 36 36 H 1.09003 * 109.47098 * 330.00689 * 23 22 19 37 37 H 1.08998 * 109.47018 * 64.44935 * 24 22 19 38 38 H 1.08992 * 109.46922 * 184.44948 * 24 22 19 39 39 H 1.09002 * 109.46578 * 304.45319 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 0.0000 0.0016 7 6 3.5797 -1.1986 0.0061 8 6 2.1975 -1.1974 0.0002 9 6 1.4432 -2.5020 0.0006 10 7 1.0427 -2.8342 1.3700 11 6 -0.1361 -2.3534 1.8745 12 1 -0.1688 -1.9433 2.8729 13 6 -1.2889 -2.3932 1.1023 14 7 -2.2415 -1.5059 1.2958 15 14 -1.4883 -3.7061 -0.2115 16 1 -2.0886 -4.9230 0.3919 17 1 -2.3759 -3.1982 -1.2883 18 1 -0.1589 -4.0408 -0.7826 19 16 2.0124 -3.7967 2.3058 20 8 3.3400 -3.6061 1.8363 21 8 1.6243 -3.5679 3.6534 22 7 1.6173 -5.3686 1.9659 23 6 2.3712 -6.1106 0.9523 24 6 0.5139 -6.0172 2.6786 25 1 -0.3633 0.0202 1.0275 26 1 -0.3633 0.8797 -0.5312 27 1 -0.3633 -0.8999 -0.4961 28 1 1.6573 2.1327 -0.0004 29 1 4.1190 2.1346 0.0010 30 1 4.1191 -2.1343 0.0108 31 1 2.0832 -3.2919 -0.3926 32 1 0.5554 -2.4085 -0.6251 33 1 -3.0473 -1.5338 0.7565 34 1 3.2141 -6.6159 1.4239 35 1 1.7207 -6.8492 0.4840 36 1 2.7399 -5.4188 0.1949 37 1 -0.4221 -5.5157 2.4326 38 1 0.4545 -7.0639 2.3808 39 1 0.6884 -5.9542 3.7527 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283594813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:27 Heat of formation + Delta-G solvation = -93.302473 kcal Electronic energy + Delta-G solvation = -26316.954587 eV Core-core repulsion = 22494.025087 eV Total energy + Delta-G solvation = -3822.929500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.80647 -40.50508 -37.99931 -37.48222 -36.80543 -36.53725 -34.17864 -33.11000 -32.24956 -28.89682 -28.16654 -26.83596 -25.80397 -25.25518 -23.24437 -21.96272 -20.23047 -19.16635 -18.84034 -18.18021 -17.73391 -17.48562 -17.16555 -16.64237 -16.49278 -16.22898 -15.43102 -15.25091 -15.15437 -14.88600 -14.71459 -14.48006 -14.43824 -13.97607 -13.95083 -13.55211 -13.49802 -13.14142 -13.00850 -12.87944 -12.79537 -12.53063 -12.49892 -12.44435 -12.29792 -12.20237 -12.08391 -11.86431 -11.66685 -10.60025 -9.94051 -9.89905 -9.78773 -9.27769 -8.45343 -6.02336 -0.12837 0.30981 0.36781 1.35146 1.47227 1.49148 2.22538 2.30658 2.63680 2.88381 2.93764 3.35000 3.65619 3.81513 3.89249 4.02054 4.17215 4.20350 4.32280 4.43235 4.52882 4.57017 4.67633 4.78173 4.88263 4.92533 4.94541 5.01230 5.11814 5.14965 5.19856 5.22059 5.29760 5.41648 5.65022 5.75456 5.85880 5.88242 6.10115 6.36227 7.09177 7.19556 8.64823 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.007913 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.773002 B = 3537.549582 C = 4871.416363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.069 4.069 3 C -0.103 4.103 4 C -0.143 4.143 5 C 0.058 3.942 6 F -0.150 7.150 7 C -0.139 4.139 8 C -0.089 4.089 9 C 0.159 3.841 10 N -0.847 5.847 11 C -0.295 4.295 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.853 5.853 15 Si 0.885 3.115 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.229 1.229 19 S 2.706 3.294 20 O -1.017 7.017 21 O -1.024 7.024 22 N -1.029 6.029 23 C 0.090 3.910 24 C 0.092 3.908 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.283 0.717 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -2.560 -7.542 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.120 4.120 4 C -0.161 4.161 5 C 0.039 3.961 6 F -0.129 7.129 7 C -0.159 4.159 8 C -0.091 4.091 9 C 0.033 3.967 10 N -0.677 5.677 11 C -0.435 4.435 12 H 0.081 0.919 13 C -0.149 4.149 14 N -0.489 5.489 15 Si 0.707 3.293 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.152 1.152 19 S 2.728 3.272 20 O -1.002 7.002 21 O -1.009 7.009 22 N -0.867 5.867 23 C -0.056 4.056 24 C -0.053 4.053 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.620 -2.369 -6.906 8.640 hybrid contribution -0.368 -0.784 -0.281 0.910 sum 4.252 -3.153 -7.187 8.926 Atomic orbital electron populations 1.20932 0.89269 1.01393 1.03698 1.20246 0.97541 0.92535 0.96699 1.21169 0.93047 0.98393 0.99431 1.21343 0.95028 0.97066 1.02705 1.17828 0.76576 0.95248 1.06463 1.91432 1.29533 1.97514 1.94455 1.21222 0.94535 0.97867 1.02293 1.20097 0.92523 0.96487 1.00039 1.20588 0.98214 0.93085 0.84810 1.53502 1.34506 1.55547 1.24159 1.18324 0.85009 1.37797 1.02380 0.91893 1.25897 0.94330 0.95990 0.98646 1.69964 1.08554 1.30494 1.39851 0.86888 0.80554 0.81681 0.80182 1.19789 1.20155 1.15186 1.06066 0.73907 0.72878 0.74332 1.93409 1.38602 1.85933 1.82210 1.93395 1.84346 1.85384 1.37737 1.58336 1.44888 1.31725 1.51779 1.21610 0.96159 0.97348 0.90437 1.21509 0.88082 0.99657 0.96102 0.90098 0.91549 0.92494 0.82447 0.82280 0.84795 0.89816 0.89580 0.90718 0.92458 0.89043 0.91781 0.93688 0.87798 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.59 7.52 71.24 0.54 -3.05 16 2 C -0.07 -2.50 5.88 -19.86 -0.12 -2.62 16 3 C -0.10 -3.09 9.70 22.26 0.22 -2.87 16 4 C -0.14 -4.19 10.03 22.31 0.22 -3.97 16 5 C 0.06 2.00 7.30 22.38 0.16 2.17 16 6 F -0.15 -5.16 17.27 44.97 0.78 -4.39 16 7 C -0.14 -5.25 9.00 22.31 0.20 -5.05 16 8 C -0.09 -3.42 5.45 -19.87 -0.11 -3.53 16 9 C 0.16 6.14 3.44 85.63 0.29 6.43 16 10 N -0.85 -37.25 2.34 -347.19 -0.81 -38.06 16 11 C -0.29 -14.38 7.51 84.03 0.63 -13.75 16 12 H 0.06 3.62 7.79 -2.91 -0.02 3.60 16 13 C 0.06 2.93 2.97 84.86 0.25 3.18 16 14 N -0.85 -40.75 12.68 21.65 0.27 -40.47 16 15 Si 0.88 34.28 26.08 68.60 1.79 36.07 16 16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.23 -7.97 5.49 99.48 0.55 -7.42 16 19 S 2.71 120.02 5.96 -56.49 -0.34 119.68 16 20 O -1.02 -45.81 14.70 -128.00 -1.88 -47.70 16 21 O -1.02 -53.48 16.24 -128.00 -2.08 -55.56 16 22 N -1.03 -36.30 3.64 -562.68 -2.05 -38.35 16 23 C 0.09 2.41 10.26 127.77 1.31 3.72 16 24 C 0.09 2.93 10.41 127.77 1.33 4.26 16 25 H 0.08 3.56 6.10 -2.38 -0.01 3.55 16 26 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 27 H 0.06 2.19 4.15 -2.39 -0.01 2.18 16 28 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.13 5.12 7.19 -2.91 -0.02 5.10 16 31 H 0.08 2.87 7.31 -2.39 -0.02 2.85 16 32 H 0.09 3.23 2.93 -2.38 -0.01 3.22 16 33 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.89 7.96 -2.39 -0.02 1.87 16 36 H 0.06 1.73 7.32 -2.39 -0.02 1.71 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.40 7.83 -2.39 -0.02 2.38 16 39 H 0.05 1.70 7.84 -2.39 -0.02 1.69 16 Total: -1.00 -60.34 323.32 1.53 -58.81 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.92 Total: 25.04 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.93 Total: -15.07 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -2.59 Total: -116.89 kcal Atomic # 8 Polarization: -99.30 SS G_CDS: -3.96 Total: -103.26 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 1.79 Total: 36.07 kcal Atomic # 16 Polarization: 120.02 SS G_CDS: -0.34 Total: 119.68 kcal Total: -60.34 1.53 -58.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283594813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.489 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds