Wall clock time and date at job start Tue Mar 31 2020 11:06:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38266 * 119.97478 * 2 1
4 4 C 1.38179 * 120.02401 * 179.97438 * 3 2 1
5 5 C 1.38485 * 119.97432 * 0.02562 * 4 3 2
6 6 F 1.35100 * 120.02079 * 180.02562 * 5 4 3
7 7 C 1.38433 * 119.94678 * 359.71033 * 5 4 3
8 8 C 1.38219 * 119.97746 * 0.54466 * 7 5 4
9 9 C 1.50695 * 119.98721 * 179.75309 * 8 7 5
10 10 N 1.46492 * 109.47496 * 97.21553 * 9 8 7
11 11 C 1.36939 * 120.00540 * 87.21716 * 10 9 8
12 12 H 1.07993 * 120.00295 * 224.33285 * 11 10 9
13 13 C 1.38816 * 119.99647 * 44.32958 * 11 10 9
14 14 N 1.31614 * 119.99977 * 207.72161 * 13 11 10
15 15 Si 1.86803 * 119.99952 * 27.72242 * 13 11 10
16 16 H 1.48503 * 109.47113 * 87.64746 * 15 13 11
17 17 H 1.48501 * 109.47251 * 207.64595 * 15 13 11
18 18 H 1.48504 * 109.47136 * 327.64557 * 15 13 11
19 19 S 1.65603 * 119.99757 * 266.94247 * 10 9 8
20 20 O 1.42102 * 106.40143 * 27.66276 * 19 10 9
21 21 O 1.42101 * 106.40357 * 160.57938 * 19 10 9
22 22 N 1.65599 * 107.22099 * 274.11795 * 19 10 9
23 23 C 1.46507 * 119.99823 * 93.93327 * 22 19 10
24 24 C 1.46501 * 120.00419 * 273.94041 * 22 19 10
25 25 H 1.09008 * 109.46949 * 271.12872 * 1 2 3
26 26 H 1.08995 * 109.46787 * 31.12836 * 1 2 3
27 27 H 1.08994 * 109.47196 * 151.13226 * 1 2 3
28 28 H 1.07995 * 119.99080 * 359.97438 * 3 2 1
29 29 H 1.07998 * 120.01137 * 180.02562 * 4 3 2
30 30 H 1.08002 * 120.01194 * 180.29260 * 7 5 4
31 31 H 1.09001 * 109.47439 * 337.21108 * 9 8 7
32 32 H 1.09009 * 109.46919 * 217.21644 * 9 8 7
33 33 H 0.97000 * 120.00418 * 180.02562 * 14 13 11
34 34 H 1.09003 * 109.46856 * 90.00344 * 23 22 19
35 35 H 1.08993 * 109.47083 * 210.00355 * 23 22 19
36 36 H 1.09003 * 109.47098 * 330.00689 * 23 22 19
37 37 H 1.08998 * 109.47018 * 64.44935 * 24 22 19
38 38 H 1.08992 * 109.46922 * 184.44948 * 24 22 19
39 39 H 1.09002 * 109.46578 * 304.45319 * 24 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1977 0.0000
4 6 3.5796 1.1989 0.0005
5 6 4.2725 -0.0001 0.0005
6 9 5.6235 0.0000 0.0016
7 6 3.5797 -1.1986 0.0061
8 6 2.1975 -1.1974 0.0002
9 6 1.4432 -2.5020 0.0006
10 7 1.0427 -2.8342 1.3700
11 6 -0.1361 -2.3534 1.8745
12 1 -0.1688 -1.9433 2.8729
13 6 -1.2889 -2.3932 1.1023
14 7 -2.2415 -1.5059 1.2958
15 14 -1.4883 -3.7061 -0.2115
16 1 -2.0886 -4.9230 0.3919
17 1 -2.3759 -3.1982 -1.2883
18 1 -0.1589 -4.0408 -0.7826
19 16 2.0124 -3.7967 2.3058
20 8 3.3400 -3.6061 1.8363
21 8 1.6243 -3.5679 3.6534
22 7 1.6173 -5.3686 1.9659
23 6 2.3712 -6.1106 0.9523
24 6 0.5139 -6.0172 2.6786
25 1 -0.3633 0.0202 1.0275
26 1 -0.3633 0.8797 -0.5312
27 1 -0.3633 -0.8999 -0.4961
28 1 1.6573 2.1327 -0.0004
29 1 4.1190 2.1346 0.0010
30 1 4.1191 -2.1343 0.0108
31 1 2.0832 -3.2919 -0.3926
32 1 0.5554 -2.4085 -0.6251
33 1 -3.0473 -1.5338 0.7565
34 1 3.2141 -6.6159 1.4239
35 1 1.7207 -6.8492 0.4840
36 1 2.7399 -5.4188 0.1949
37 1 -0.4221 -5.5157 2.4326
38 1 0.4545 -7.0639 2.3808
39 1 0.6884 -5.9542 3.7527
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000283594813.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:27
Heat of formation + Delta-G solvation = -93.302473 kcal
Electronic energy + Delta-G solvation = -26316.954587 eV
Core-core repulsion = 22494.025087 eV
Total energy + Delta-G solvation = -3822.929500 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.104 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-49.80647 -40.50508 -37.99931 -37.48222 -36.80543 -36.53725 -34.17864 -33.11000
-32.24956 -28.89682 -28.16654 -26.83596 -25.80397 -25.25518 -23.24437 -21.96272
-20.23047 -19.16635 -18.84034 -18.18021 -17.73391 -17.48562 -17.16555 -16.64237
-16.49278 -16.22898 -15.43102 -15.25091 -15.15437 -14.88600 -14.71459 -14.48006
-14.43824 -13.97607 -13.95083 -13.55211 -13.49802 -13.14142 -13.00850 -12.87944
-12.79537 -12.53063 -12.49892 -12.44435 -12.29792 -12.20237 -12.08391 -11.86431
-11.66685 -10.60025 -9.94051 -9.89905 -9.78773 -9.27769 -8.45343 -6.02336
-0.12837 0.30981 0.36781 1.35146 1.47227 1.49148 2.22538 2.30658
2.63680 2.88381 2.93764 3.35000 3.65619 3.81513 3.89249 4.02054
4.17215 4.20350 4.32280 4.43235 4.52882 4.57017 4.67633 4.78173
4.88263 4.92533 4.94541 5.01230 5.11814 5.14965 5.19856 5.22059
5.29760 5.41648 5.65022 5.75456 5.85880 5.88242 6.10115 6.36227
7.09177 7.19556 8.64823
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.013064 B = 0.007913 C = 0.005746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2142.773002 B = 3537.549582 C = 4871.416363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.069 4.069
3 C -0.103 4.103
4 C -0.143 4.143
5 C 0.058 3.942
6 F -0.150 7.150
7 C -0.139 4.139
8 C -0.089 4.089
9 C 0.159 3.841
10 N -0.847 5.847
11 C -0.295 4.295
12 H 0.063 0.937
13 C 0.064 3.936
14 N -0.853 5.853
15 Si 0.885 3.115
16 H -0.272 1.272
17 H -0.276 1.276
18 H -0.229 1.229
19 S 2.706 3.294
20 O -1.017 7.017
21 O -1.024 7.024
22 N -1.029 6.029
23 C 0.090 3.910
24 C 0.092 3.908
25 H 0.081 0.919
26 H 0.066 0.934
27 H 0.056 0.944
28 H 0.158 0.842
29 H 0.160 0.840
30 H 0.134 0.866
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.283 0.717
34 H 0.057 0.943
35 H 0.091 0.909
36 H 0.063 0.937
37 H 0.044 0.956
38 H 0.103 0.897
39 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.928 -2.560 -7.542 8.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.070 4.070
3 C -0.120 4.120
4 C -0.161 4.161
5 C 0.039 3.961
6 F -0.129 7.129
7 C -0.159 4.159
8 C -0.091 4.091
9 C 0.033 3.967
10 N -0.677 5.677
11 C -0.435 4.435
12 H 0.081 0.919
13 C -0.149 4.149
14 N -0.489 5.489
15 Si 0.707 3.293
16 H -0.198 1.198
17 H -0.202 1.202
18 H -0.152 1.152
19 S 2.728 3.272
20 O -1.002 7.002
21 O -1.009 7.009
22 N -0.867 5.867
23 C -0.056 4.056
24 C -0.053 4.053
25 H 0.099 0.901
26 H 0.085 0.915
27 H 0.075 0.925
28 H 0.176 0.824
29 H 0.177 0.823
30 H 0.152 0.848
31 H 0.102 0.898
32 H 0.104 0.896
33 H 0.093 0.907
34 H 0.075 0.925
35 H 0.110 0.890
36 H 0.082 0.918
37 H 0.063 0.937
38 H 0.122 0.878
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.620 -2.369 -6.906 8.640
hybrid contribution -0.368 -0.784 -0.281 0.910
sum 4.252 -3.153 -7.187 8.926
Atomic orbital electron populations
1.20932 0.89269 1.01393 1.03698 1.20246 0.97541 0.92535 0.96699
1.21169 0.93047 0.98393 0.99431 1.21343 0.95028 0.97066 1.02705
1.17828 0.76576 0.95248 1.06463 1.91432 1.29533 1.97514 1.94455
1.21222 0.94535 0.97867 1.02293 1.20097 0.92523 0.96487 1.00039
1.20588 0.98214 0.93085 0.84810 1.53502 1.34506 1.55547 1.24159
1.18324 0.85009 1.37797 1.02380 0.91893 1.25897 0.94330 0.95990
0.98646 1.69964 1.08554 1.30494 1.39851 0.86888 0.80554 0.81681
0.80182 1.19789 1.20155 1.15186 1.06066 0.73907 0.72878 0.74332
1.93409 1.38602 1.85933 1.82210 1.93395 1.84346 1.85384 1.37737
1.58336 1.44888 1.31725 1.51779 1.21610 0.96159 0.97348 0.90437
1.21509 0.88082 0.99657 0.96102 0.90098 0.91549 0.92494 0.82447
0.82280 0.84795 0.89816 0.89580 0.90718 0.92458 0.89043 0.91781
0.93688 0.87798 0.93038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.59 7.52 71.24 0.54 -3.05 16
2 C -0.07 -2.50 5.88 -19.86 -0.12 -2.62 16
3 C -0.10 -3.09 9.70 22.26 0.22 -2.87 16
4 C -0.14 -4.19 10.03 22.31 0.22 -3.97 16
5 C 0.06 2.00 7.30 22.38 0.16 2.17 16
6 F -0.15 -5.16 17.27 44.97 0.78 -4.39 16
7 C -0.14 -5.25 9.00 22.31 0.20 -5.05 16
8 C -0.09 -3.42 5.45 -19.87 -0.11 -3.53 16
9 C 0.16 6.14 3.44 85.63 0.29 6.43 16
10 N -0.85 -37.25 2.34 -347.19 -0.81 -38.06 16
11 C -0.29 -14.38 7.51 84.03 0.63 -13.75 16
12 H 0.06 3.62 7.79 -2.91 -0.02 3.60 16
13 C 0.06 2.93 2.97 84.86 0.25 3.18 16
14 N -0.85 -40.75 12.68 21.65 0.27 -40.47 16
15 Si 0.88 34.28 26.08 68.60 1.79 36.07 16
16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16
17 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16
18 H -0.23 -7.97 5.49 99.48 0.55 -7.42 16
19 S 2.71 120.02 5.96 -56.49 -0.34 119.68 16
20 O -1.02 -45.81 14.70 -128.00 -1.88 -47.70 16
21 O -1.02 -53.48 16.24 -128.00 -2.08 -55.56 16
22 N -1.03 -36.30 3.64 -562.68 -2.05 -38.35 16
23 C 0.09 2.41 10.26 127.77 1.31 3.72 16
24 C 0.09 2.93 10.41 127.77 1.33 4.26 16
25 H 0.08 3.56 6.10 -2.38 -0.01 3.55 16
26 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16
27 H 0.06 2.19 4.15 -2.39 -0.01 2.18 16
28 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16
29 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16
30 H 0.13 5.12 7.19 -2.91 -0.02 5.10 16
31 H 0.08 2.87 7.31 -2.39 -0.02 2.85 16
32 H 0.09 3.23 2.93 -2.38 -0.01 3.22 16
33 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16
34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.09 1.89 7.96 -2.39 -0.02 1.87 16
36 H 0.06 1.73 7.32 -2.39 -0.02 1.71 16
37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.10 2.40 7.83 -2.39 -0.02 2.38 16
39 H 0.05 1.70 7.84 -2.39 -0.02 1.69 16
Total: -1.00 -60.34 323.32 1.53 -58.81
By element:
Atomic # 1 Polarization: 24.12 SS G_CDS: 0.92 Total: 25.04 kcal
Atomic # 6 Polarization: -20.00 SS G_CDS: 4.93 Total: -15.07 kcal
Atomic # 7 Polarization: -114.30 SS G_CDS: -2.59 Total: -116.89 kcal
Atomic # 8 Polarization: -99.30 SS G_CDS: -3.96 Total: -103.26 kcal
Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.39 kcal
Atomic # 14 Polarization: 34.28 SS G_CDS: 1.79 Total: 36.07 kcal
Atomic # 16 Polarization: 120.02 SS G_CDS: -0.34 Total: 119.68 kcal
Total: -60.34 1.53 -58.81 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000283594813.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.489 kcal
(2) G-P(sol) polarization free energy of solvation -60.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds