Wall clock time and date at job start Tue Mar 31 2020 11:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41389 * 126.57773 * 2 1 4 4 C 1.34505 * 106.84111 * 179.97438 * 3 2 1 5 5 O 1.34309 * 108.42219 * 359.73914 * 4 3 2 6 6 C 1.34302 * 109.47293 * 0.43573 * 5 4 3 7 7 C 1.50696 * 125.78654 * 179.83095 * 6 5 4 8 8 O 1.45203 * 109.47037 * 269.68707 * 7 6 5 9 9 C 1.34230 * 117.00479 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00327 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08997 * 109.46842 * 270.04211 * 1 2 3 28 28 H 1.08995 * 109.47022 * 30.04332 * 1 2 3 29 29 H 1.09001 * 109.46963 * 150.04240 * 1 2 3 30 30 H 1.07997 * 126.57721 * 359.97438 * 3 2 1 31 31 H 1.08005 * 125.78938 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.47454 * 149.68882 * 7 6 5 33 33 H 1.08993 * 109.47450 * 29.68599 * 7 6 5 34 34 H 1.09004 * 109.46756 * 59.99766 * 11 9 8 35 35 H 1.08998 * 109.46908 * 300.00408 * 11 9 8 36 36 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 37 37 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 38 38 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 39 39 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 40 40 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6812 0.0006 5 8 3.5848 -0.6615 0.0067 6 6 2.3087 -1.0801 0.0005 7 6 1.8524 -2.5163 0.0008 8 8 1.7062 -2.9779 -1.3682 9 6 1.3028 -4.2461 -1.5439 10 8 1.0787 -4.9470 -0.5856 11 6 1.1282 -4.7952 -2.9364 12 6 0.6714 -6.2291 -2.8574 13 6 1.6038 -7.2502 -2.8204 14 6 1.1886 -8.5671 -2.7473 15 6 -0.1591 -8.8664 -2.7045 16 6 -1.0976 -7.8440 -2.7472 17 8 -2.4230 -8.1354 -2.7114 18 6 -2.7646 -9.4389 -2.7562 19 1 -1.9978 -10.1991 -2.7356 20 6 -4.1005 -9.8034 -2.8288 21 7 -5.0345 -8.8774 -2.8544 22 14 -4.5737 -11.6094 -2.8916 23 1 -3.3464 -12.4444 -2.8502 24 1 -5.4339 -11.9365 -1.7262 25 1 -5.3170 -11.8830 -4.1478 26 6 -0.6774 -6.5221 -2.8215 27 1 -0.3633 0.0008 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8904 -0.5132 30 1 2.0366 2.1691 -0.0004 31 1 4.5060 1.2926 0.0011 32 1 0.8940 -2.5930 0.5143 33 1 2.5903 -3.1320 0.5149 34 1 2.0782 -4.7448 -3.4685 35 1 0.3820 -4.2052 -3.4687 36 1 2.6583 -7.0183 -2.8486 37 1 1.9189 -9.3621 -2.7189 38 1 -0.4828 -9.8950 -2.6422 39 1 -5.9690 -9.1324 -2.9055 40 1 -1.4049 -5.7245 -2.8508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293427181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:41 Heat of formation + Delta-G solvation = -73.612314 kcal Electronic energy + Delta-G solvation = -24635.337930 eV Core-core repulsion = 20768.985862 eV Total energy + Delta-G solvation = -3866.352068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91245 -40.46756 -38.97721 -36.97114 -36.18038 -34.48462 -32.51416 -32.14223 -31.47416 -29.29740 -28.71638 -27.34900 -25.70016 -25.20082 -22.07448 -21.75836 -21.54521 -20.35415 -20.09104 -17.77856 -17.68782 -17.46102 -16.96736 -16.55770 -16.32878 -15.89331 -15.13164 -14.78393 -14.53316 -14.38606 -13.99566 -13.64048 -13.50533 -13.39499 -13.14447 -13.13019 -12.76736 -12.73478 -12.50207 -12.42680 -11.91328 -11.75149 -11.56974 -11.29309 -10.88074 -10.82481 -10.80118 -10.64217 -10.43166 -10.40399 -9.92087 -9.34209 -8.83954 -8.78531 -8.12089 -7.23633 -6.43666 -4.02671 1.18239 1.96438 2.20684 2.31222 2.37228 2.56808 3.09062 3.14706 3.15689 3.20344 3.97401 4.29043 4.52882 4.56582 4.59292 4.81237 4.85906 4.94625 5.10370 5.13527 5.18479 5.26458 5.38989 5.45613 5.48314 5.53768 5.63255 5.73209 5.76517 5.85159 5.91304 6.15380 6.21667 6.31697 6.34312 6.64085 6.81433 6.89308 7.06570 7.22100 7.35412 7.42939 7.78951 7.83683 8.01264 9.02147 9.72197 10.74564 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.002336 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.374854 B =11982.084852 C =12824.351896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.145 4.145 3 C -0.216 4.216 4 C -0.026 4.026 5 O -0.170 6.170 6 C -0.027 4.027 7 C 0.149 3.851 8 O -0.358 6.358 9 C 0.462 3.538 10 O -0.487 6.487 11 C -0.063 4.063 12 C -0.045 4.045 13 C -0.194 4.194 14 C -0.074 4.074 15 C -0.227 4.227 16 C 0.154 3.846 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.171 4.171 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.206 0.794 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.269 0.731 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.844 16.766 3.212 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C -0.235 4.235 4 C -0.094 4.094 5 O -0.066 6.066 6 C -0.077 4.077 7 C 0.076 3.924 8 O -0.276 6.276 9 C 0.304 3.696 10 O -0.372 6.372 11 C -0.100 4.100 12 C -0.045 4.045 13 C -0.213 4.213 14 C -0.093 4.093 15 C -0.246 4.246 16 C 0.100 3.900 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.191 4.191 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.222 0.778 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.548 16.506 3.549 22.286 hybrid contribution -0.206 -0.664 0.172 0.716 sum 14.342 15.842 3.722 21.691 Atomic orbital electron populations 1.20291 0.88768 1.03289 1.02464 1.20373 0.97435 0.91896 1.04936 1.21760 0.92548 0.99926 1.09261 1.24089 0.99880 0.80524 1.04929 1.84022 1.28571 1.22817 1.71160 1.21556 0.81251 0.95035 1.09843 1.20985 1.02387 0.86941 0.82081 1.86579 1.79397 1.30951 1.30691 1.23915 0.73392 0.78976 0.93306 1.90735 1.45110 1.58540 1.42775 1.20274 1.04875 0.94485 0.90385 1.18659 0.92963 0.91836 1.01072 1.20381 0.97593 0.92640 1.10721 1.20690 0.95025 0.95663 0.97887 1.21212 0.92924 0.99906 1.10577 1.19262 0.85225 0.92900 0.92587 1.83977 1.16995 1.28304 1.78928 1.21372 0.92787 0.80032 1.52523 0.89022 1.25286 0.94526 1.00163 0.96585 1.70046 1.00629 1.32930 1.46220 0.85647 0.79032 0.80505 0.78232 1.19104 1.20168 1.20150 1.19966 0.94427 0.94503 1.10180 0.91036 0.91039 0.91118 0.83147 0.77781 0.87874 0.89452 0.87069 0.86912 0.87714 0.87309 0.85489 0.92098 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.14 -1.49 6.16 -104.74 -0.65 -2.13 16 3 C -0.22 -1.84 10.87 -39.70 -0.43 -2.28 16 4 C -0.03 -0.21 12.09 29.41 0.36 0.15 16 5 O -0.17 -1.87 10.65 5.70 0.06 -1.81 16 6 C -0.03 -0.31 6.96 -35.63 -0.25 -0.56 16 7 C 0.15 1.75 5.61 36.00 0.20 1.95 16 8 O -0.36 -4.73 10.20 -39.26 -0.40 -5.13 16 9 C 0.46 6.88 7.95 36.01 0.29 7.17 16 10 O -0.49 -8.96 15.78 -18.75 -0.30 -9.26 16 11 C -0.06 -0.85 5.94 -29.04 -0.17 -1.02 16 12 C -0.04 -0.81 4.37 -104.65 -0.46 -1.26 16 13 C -0.19 -3.43 9.70 -39.53 -0.38 -3.81 16 14 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 15 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 16 C 0.15 3.78 6.65 -39.11 -0.26 3.52 16 17 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 18 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 19 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 22 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.17 -3.67 9.65 -39.39 -0.38 -4.05 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 30 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.21 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.10 1.13 7.75 -51.93 -0.40 0.73 16 33 H 0.09 0.99 8.13 -51.93 -0.42 0.56 16 34 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -34.22 356.63 -6.59 -40.81 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.73 Total: 3.91 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.34 Total: -19.69 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.64 Total: -21.35 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.22 -6.59 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293427181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.800 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds