Wall clock time and date at job start Tue Mar 31 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47173 * 2 1 4 4 C 1.46504 * 119.99846 * 274.34856 * 3 2 1 5 5 C 1.50692 * 109.46874 * 280.38239 * 4 3 2 6 6 H 1.07994 * 120.00316 * 3.96903 * 5 4 3 7 7 C 1.37882 * 119.99770 * 183.96661 * 5 4 3 8 8 N 1.31515 * 120.00001 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47170 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47113 * 120.00037 * 9 7 5 12 12 H 1.48498 * 109.46804 * 239.99651 * 9 7 5 13 13 S 1.65594 * 119.99835 * 94.34328 * 3 2 1 14 14 O 1.42100 * 106.40635 * 330.38043 * 13 3 2 15 15 O 1.42107 * 106.40458 * 197.45851 * 13 3 2 16 16 N 1.65602 * 107.21652 * 83.91909 * 13 3 2 17 17 C 1.46501 * 119.99877 * 64.58742 * 16 13 3 18 18 C 1.50695 * 109.46981 * 164.49423 * 17 16 13 19 19 C 1.38275 * 119.98684 * 270.24816 * 18 17 16 20 20 C 1.38226 * 120.05132 * 180.25515 * 19 18 17 21 21 C 1.38219 * 120.02132 * 359.49241 * 20 19 18 22 22 C 1.38436 * 119.97821 * 0.25466 * 21 20 19 23 23 F 1.35104 * 120.02632 * 179.97438 * 22 21 20 24 24 C 1.38175 * 119.99120 * 89.99569 * 18 17 16 25 25 H 1.08999 * 109.47430 * 305.08026 * 1 2 3 26 26 H 1.09004 * 109.47157 * 65.08532 * 1 2 3 27 27 H 1.09005 * 109.47152 * 185.08104 * 1 2 3 28 28 H 1.09002 * 109.46794 * 240.00442 * 2 1 3 29 29 H 1.08996 * 109.47478 * 119.99871 * 2 1 3 30 30 H 1.08995 * 109.47310 * 40.38611 * 4 3 2 31 31 H 1.09007 * 109.46602 * 160.38496 * 4 3 2 32 32 H 0.96994 * 119.99869 * 180.02562 * 8 7 5 33 33 H 0.96995 * 119.99725 * 244.58010 * 16 13 3 34 34 H 1.08995 * 109.47249 * 44.49135 * 17 16 13 35 35 H 1.08997 * 109.46763 * 284.48979 * 17 16 13 36 36 H 1.08000 * 119.97264 * 0.02829 * 19 18 17 37 37 H 1.07996 * 119.98580 * 179.77155 * 20 19 18 38 38 H 1.08002 * 120.00827 * 180.22798 * 21 20 19 39 39 H 1.08004 * 120.01001 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1718 2.1039 -1.2651 5 6 3.4551 1.6813 -1.9324 6 1 4.0606 0.9020 -1.4940 7 6 3.8562 2.2897 -3.1030 8 7 3.1191 3.2391 -3.6367 9 14 5.4467 1.7654 -3.9306 10 1 6.0863 0.6867 -3.1354 11 1 5.1520 1.2651 -5.2973 12 1 6.3665 2.9281 -4.0168 13 16 2.3967 2.1256 1.4300 14 8 1.5552 1.5474 2.4184 15 8 2.4329 3.5202 1.1592 16 7 3.9450 1.6842 1.8177 17 6 5.0597 2.0922 0.9591 18 6 6.3584 1.9091 1.7012 19 6 6.8677 2.9408 2.4681 20 6 8.0615 2.7761 3.1451 21 6 8.7422 1.5758 3.0646 22 6 8.2307 0.5403 2.3014 23 9 8.8956 -0.6331 2.2216 24 6 7.0373 0.7084 1.6193 25 1 -0.3634 0.5906 0.8410 26 1 -0.3634 0.4329 -0.9321 27 1 -0.3634 -1.0237 0.0910 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.3300 1.8752 -1.9186 31 1 2.1996 3.1760 -1.0700 32 1 3.4012 3.6668 -4.4603 33 1 4.1138 1.1556 2.6132 34 1 4.9425 3.1407 0.6852 35 1 5.0670 1.4798 0.0576 36 1 6.3341 3.8774 2.5352 37 1 8.4601 3.5839 3.7408 38 1 9.6731 1.4461 3.5966 39 1 6.6375 -0.0987 1.0232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:06 Heat of formation + Delta-G solvation = -103.864448 kcal Electronic energy + Delta-G solvation = -24938.100236 eV Core-core repulsion = 21114.712734 eV Total energy + Delta-G solvation = -3823.387501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.94161 -39.25554 -36.68029 -36.06786 -35.22888 -35.02043 -32.75009 -31.07573 -30.46948 -29.94956 -26.68281 -25.64966 -23.18467 -22.78725 -21.77509 -21.55512 -18.89948 -17.68884 -17.04883 -16.81297 -16.43900 -16.33358 -16.18997 -15.74385 -15.57792 -15.06430 -14.47092 -14.14816 -13.83227 -13.58024 -13.35457 -13.15407 -12.88002 -12.62074 -12.33466 -12.07961 -12.02849 -11.83156 -11.70895 -11.58215 -11.44234 -11.32313 -11.10192 -10.96207 -10.93364 -10.55428 -10.39508 -10.05288 -9.83402 -9.11914 -9.08740 -8.77003 -8.54544 -8.08563 -6.15802 -4.22822 0.94820 1.11332 1.36840 3.20792 3.29911 3.30505 3.37681 3.67494 4.14473 4.15814 4.31482 4.58738 4.72810 4.93310 5.07652 5.15495 5.18469 5.28602 5.39090 5.59063 5.70856 5.75456 5.80295 5.91157 5.98996 6.05368 6.12331 6.21934 6.27709 6.33354 6.52610 6.66119 6.69688 6.81302 7.23356 7.35106 7.41761 7.65111 7.81377 8.11302 8.81832 9.43326 10.92051 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005772 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.477389 B = 4850.179146 C = 6377.170406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.785 3.215 14 O -0.999 6.999 15 O -0.978 6.978 16 N -1.128 6.128 17 C 0.155 3.845 18 C -0.059 4.059 19 C -0.113 4.113 20 C -0.094 4.094 21 C -0.155 4.155 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.137 4.137 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -4.289 11.109 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.961 6.961 16 N -0.886 5.886 17 C 0.030 3.970 18 C -0.060 4.060 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.175 4.175 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.157 4.157 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.101 -3.489 11.252 13.266 hybrid contribution 1.447 -0.996 -0.575 1.848 sum 7.548 -4.485 10.676 13.823 Atomic orbital electron populations 1.22209 0.96925 1.01321 1.02461 1.20955 0.93660 0.82832 1.02031 1.57721 1.78630 1.23043 1.23901 1.19237 0.97207 0.92685 0.78880 1.21551 1.07146 1.20872 1.08413 0.91766 1.24946 0.97052 0.94725 0.97000 1.69938 1.37922 1.24402 1.20117 0.86601 0.83510 0.78657 0.79643 1.19577 1.20932 1.20795 1.01782 0.72544 0.73759 0.72646 1.93556 1.64975 1.79740 1.60001 1.93580 1.86468 1.30928 1.85125 1.56073 1.24590 1.71122 1.36767 1.20377 0.81357 1.02989 0.92298 1.19920 0.96440 0.92852 0.96826 1.21301 0.95973 0.99486 0.96442 1.21009 0.94748 0.96600 0.98882 1.21136 1.01735 0.93376 1.01212 1.17695 0.92529 0.82239 1.00180 1.91494 1.79971 1.45581 1.95047 1.21174 0.94404 0.99101 1.01004 0.92465 0.92163 0.92465 0.90075 0.92215 0.94726 0.92562 0.92577 0.76051 0.88849 0.88465 0.84812 0.84972 0.84996 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.15 0.38 -2.25 16 2 C 0.13 2.19 6.01 -4.04 -0.02 2.17 16 3 N -0.99 -19.37 2.84 -115.66 -0.33 -19.69 16 4 C 0.24 5.70 5.46 -5.20 -0.03 5.68 16 5 C -0.54 -13.21 8.50 -34.44 -0.29 -13.50 16 6 H 0.06 1.49 6.45 -52.49 -0.34 1.15 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 9 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 S 2.78 52.57 6.07 -107.50 -0.65 51.92 16 14 O -1.00 -19.67 17.10 -57.17 -0.98 -20.65 16 15 O -0.98 -21.80 16.02 -57.17 -0.92 -22.71 16 16 N -1.13 -17.25 6.04 -11.66 -0.07 -17.32 16 17 C 0.16 2.44 6.31 -5.20 -0.03 2.41 16 18 C -0.06 -0.79 5.28 -104.63 -0.55 -1.34 16 19 C -0.11 -1.34 9.70 -39.57 -0.38 -1.72 16 20 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 21 C -0.16 -1.65 10.03 -39.52 -0.40 -2.04 16 22 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 23 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 24 C -0.14 -1.79 9.68 -39.52 -0.38 -2.18 16 25 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 29 H 0.06 0.88 7.80 -51.93 -0.40 0.47 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.48 6.77 -51.93 -0.35 1.12 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.41 5.23 8.65 -34.47 -0.30 4.94 16 34 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 35 H 0.10 1.66 5.85 -51.93 -0.30 1.35 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -30.38 347.65 -9.47 -39.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.02 Total: 5.73 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.50 Total: -11.64 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.34 Total: -60.75 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.89 Total: -43.36 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.65 Total: 51.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.38 -9.47 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.017 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds